pyGSTi 0.9.12__cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl → 0.9.13__cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl

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Files changed (225) hide show
  1. pyGSTi-0.9.13.dist-info/METADATA +185 -0
  2. {pyGSTi-0.9.12.dist-info → pyGSTi-0.9.13.dist-info}/RECORD +554 -563
  3. {pyGSTi-0.9.12.dist-info → pyGSTi-0.9.13.dist-info}/WHEEL +1 -1
  4. pygsti/_version.py +2 -2
  5. pygsti/algorithms/contract.py +1 -1
  6. pygsti/algorithms/core.py +62 -35
  7. pygsti/algorithms/fiducialpairreduction.py +95 -110
  8. pygsti/algorithms/fiducialselection.py +17 -8
  9. pygsti/algorithms/gaugeopt.py +2 -2
  10. pygsti/algorithms/germselection.py +87 -77
  11. pygsti/algorithms/mirroring.py +0 -388
  12. pygsti/algorithms/randomcircuit.py +165 -1333
  13. pygsti/algorithms/rbfit.py +0 -234
  14. pygsti/baseobjs/basis.py +94 -396
  15. pygsti/baseobjs/errorgenbasis.py +0 -132
  16. pygsti/baseobjs/errorgenspace.py +0 -10
  17. pygsti/baseobjs/label.py +52 -168
  18. pygsti/baseobjs/opcalc/fastopcalc.cpython-38-i386-linux-gnu.so +0 -0
  19. pygsti/baseobjs/opcalc/fastopcalc.pyx +2 -2
  20. pygsti/baseobjs/polynomial.py +13 -595
  21. pygsti/baseobjs/protectedarray.py +72 -132
  22. pygsti/baseobjs/statespace.py +1 -0
  23. pygsti/circuits/__init__.py +1 -1
  24. pygsti/circuits/circuit.py +753 -504
  25. pygsti/circuits/circuitconstruction.py +0 -4
  26. pygsti/circuits/circuitlist.py +47 -5
  27. pygsti/circuits/circuitparser/__init__.py +8 -8
  28. pygsti/circuits/circuitparser/fastcircuitparser.cpython-38-i386-linux-gnu.so +0 -0
  29. pygsti/circuits/circuitstructure.py +3 -3
  30. pygsti/circuits/cloudcircuitconstruction.py +27 -14
  31. pygsti/data/datacomparator.py +4 -9
  32. pygsti/data/dataset.py +51 -46
  33. pygsti/data/hypothesistest.py +0 -7
  34. pygsti/drivers/bootstrap.py +0 -49
  35. pygsti/drivers/longsequence.py +46 -10
  36. pygsti/evotypes/basereps_cython.cpython-38-i386-linux-gnu.so +0 -0
  37. pygsti/evotypes/chp/opreps.py +0 -61
  38. pygsti/evotypes/chp/statereps.py +0 -32
  39. pygsti/evotypes/densitymx/effectcreps.cpp +9 -10
  40. pygsti/evotypes/densitymx/effectreps.cpython-38-i386-linux-gnu.so +0 -0
  41. pygsti/evotypes/densitymx/effectreps.pyx +1 -1
  42. pygsti/evotypes/densitymx/opreps.cpython-38-i386-linux-gnu.so +0 -0
  43. pygsti/evotypes/densitymx/opreps.pyx +2 -2
  44. pygsti/evotypes/densitymx/statereps.cpython-38-i386-linux-gnu.so +0 -0
  45. pygsti/evotypes/densitymx/statereps.pyx +1 -1
  46. pygsti/evotypes/densitymx_slow/effectreps.py +7 -23
  47. pygsti/evotypes/densitymx_slow/opreps.py +16 -23
  48. pygsti/evotypes/densitymx_slow/statereps.py +10 -3
  49. pygsti/evotypes/evotype.py +39 -2
  50. pygsti/evotypes/stabilizer/effectreps.cpython-38-i386-linux-gnu.so +0 -0
  51. pygsti/evotypes/stabilizer/effectreps.pyx +0 -4
  52. pygsti/evotypes/stabilizer/opreps.cpython-38-i386-linux-gnu.so +0 -0
  53. pygsti/evotypes/stabilizer/opreps.pyx +0 -4
  54. pygsti/evotypes/stabilizer/statereps.cpython-38-i386-linux-gnu.so +0 -0
  55. pygsti/evotypes/stabilizer/statereps.pyx +1 -5
  56. pygsti/evotypes/stabilizer/termreps.cpython-38-i386-linux-gnu.so +0 -0
  57. pygsti/evotypes/stabilizer/termreps.pyx +0 -7
  58. pygsti/evotypes/stabilizer_slow/effectreps.py +0 -22
  59. pygsti/evotypes/stabilizer_slow/opreps.py +0 -4
  60. pygsti/evotypes/stabilizer_slow/statereps.py +0 -4
  61. pygsti/evotypes/statevec/effectreps.cpython-38-i386-linux-gnu.so +0 -0
  62. pygsti/evotypes/statevec/effectreps.pyx +1 -1
  63. pygsti/evotypes/statevec/opreps.cpython-38-i386-linux-gnu.so +0 -0
  64. pygsti/evotypes/statevec/opreps.pyx +2 -2
  65. pygsti/evotypes/statevec/statereps.cpython-38-i386-linux-gnu.so +0 -0
  66. pygsti/evotypes/statevec/statereps.pyx +1 -1
  67. pygsti/evotypes/statevec/termreps.cpython-38-i386-linux-gnu.so +0 -0
  68. pygsti/evotypes/statevec/termreps.pyx +0 -7
  69. pygsti/evotypes/statevec_slow/effectreps.py +0 -3
  70. pygsti/evotypes/statevec_slow/opreps.py +0 -5
  71. pygsti/extras/__init__.py +0 -1
  72. pygsti/extras/drift/signal.py +1 -1
  73. pygsti/extras/drift/stabilityanalyzer.py +3 -1
  74. pygsti/extras/interpygate/__init__.py +12 -0
  75. pygsti/extras/interpygate/core.py +0 -36
  76. pygsti/extras/interpygate/process_tomography.py +44 -10
  77. pygsti/extras/rpe/rpeconstruction.py +0 -2
  78. pygsti/forwardsims/__init__.py +1 -0
  79. pygsti/forwardsims/forwardsim.py +50 -93
  80. pygsti/forwardsims/mapforwardsim.py +78 -20
  81. pygsti/forwardsims/mapforwardsim_calc_densitymx.cpython-38-i386-linux-gnu.so +0 -0
  82. pygsti/forwardsims/mapforwardsim_calc_densitymx.pyx +65 -66
  83. pygsti/forwardsims/mapforwardsim_calc_generic.py +91 -13
  84. pygsti/forwardsims/matrixforwardsim.py +72 -17
  85. pygsti/forwardsims/termforwardsim.py +9 -111
  86. pygsti/forwardsims/termforwardsim_calc_stabilizer.cpython-38-i386-linux-gnu.so +0 -0
  87. pygsti/forwardsims/termforwardsim_calc_statevec.cpython-38-i386-linux-gnu.so +0 -0
  88. pygsti/forwardsims/termforwardsim_calc_statevec.pyx +0 -651
  89. pygsti/forwardsims/torchfwdsim.py +265 -0
  90. pygsti/forwardsims/weakforwardsim.py +2 -2
  91. pygsti/io/__init__.py +1 -2
  92. pygsti/io/mongodb.py +0 -2
  93. pygsti/io/stdinput.py +6 -22
  94. pygsti/layouts/copalayout.py +10 -12
  95. pygsti/layouts/distlayout.py +0 -40
  96. pygsti/layouts/maplayout.py +103 -25
  97. pygsti/layouts/matrixlayout.py +99 -60
  98. pygsti/layouts/prefixtable.py +1534 -52
  99. pygsti/layouts/termlayout.py +1 -1
  100. pygsti/modelmembers/instruments/instrument.py +3 -3
  101. pygsti/modelmembers/instruments/tpinstrument.py +2 -2
  102. pygsti/modelmembers/modelmember.py +0 -17
  103. pygsti/modelmembers/operations/__init__.py +3 -4
  104. pygsti/modelmembers/operations/affineshiftop.py +206 -0
  105. pygsti/modelmembers/operations/composederrorgen.py +1 -1
  106. pygsti/modelmembers/operations/composedop.py +1 -24
  107. pygsti/modelmembers/operations/denseop.py +5 -5
  108. pygsti/modelmembers/operations/eigpdenseop.py +2 -2
  109. pygsti/modelmembers/operations/embeddederrorgen.py +1 -1
  110. pygsti/modelmembers/operations/embeddedop.py +0 -1
  111. pygsti/modelmembers/operations/experrorgenop.py +5 -2
  112. pygsti/modelmembers/operations/fullarbitraryop.py +1 -0
  113. pygsti/modelmembers/operations/fullcptpop.py +2 -2
  114. pygsti/modelmembers/operations/fulltpop.py +28 -6
  115. pygsti/modelmembers/operations/fullunitaryop.py +5 -4
  116. pygsti/modelmembers/operations/lindbladcoefficients.py +93 -78
  117. pygsti/modelmembers/operations/lindbladerrorgen.py +268 -441
  118. pygsti/modelmembers/operations/linearop.py +7 -27
  119. pygsti/modelmembers/operations/opfactory.py +1 -1
  120. pygsti/modelmembers/operations/repeatedop.py +1 -24
  121. pygsti/modelmembers/operations/staticstdop.py +1 -1
  122. pygsti/modelmembers/povms/__init__.py +3 -3
  123. pygsti/modelmembers/povms/basepovm.py +7 -36
  124. pygsti/modelmembers/povms/complementeffect.py +4 -9
  125. pygsti/modelmembers/povms/composedeffect.py +0 -320
  126. pygsti/modelmembers/povms/computationaleffect.py +1 -1
  127. pygsti/modelmembers/povms/computationalpovm.py +3 -1
  128. pygsti/modelmembers/povms/effect.py +3 -5
  129. pygsti/modelmembers/povms/marginalizedpovm.py +3 -81
  130. pygsti/modelmembers/povms/tppovm.py +74 -2
  131. pygsti/modelmembers/states/__init__.py +2 -5
  132. pygsti/modelmembers/states/composedstate.py +0 -317
  133. pygsti/modelmembers/states/computationalstate.py +3 -3
  134. pygsti/modelmembers/states/cptpstate.py +4 -4
  135. pygsti/modelmembers/states/densestate.py +10 -8
  136. pygsti/modelmembers/states/fullpurestate.py +0 -24
  137. pygsti/modelmembers/states/purestate.py +1 -1
  138. pygsti/modelmembers/states/state.py +5 -6
  139. pygsti/modelmembers/states/tpstate.py +28 -10
  140. pygsti/modelmembers/term.py +3 -6
  141. pygsti/modelmembers/torchable.py +50 -0
  142. pygsti/modelpacks/_modelpack.py +1 -1
  143. pygsti/modelpacks/smq1Q_ZN.py +3 -1
  144. pygsti/modelpacks/smq2Q_XXYYII.py +2 -1
  145. pygsti/modelpacks/smq2Q_XY.py +3 -3
  146. pygsti/modelpacks/smq2Q_XYI.py +2 -2
  147. pygsti/modelpacks/smq2Q_XYICNOT.py +3 -3
  148. pygsti/modelpacks/smq2Q_XYICPHASE.py +3 -3
  149. pygsti/modelpacks/smq2Q_XYXX.py +1 -1
  150. pygsti/modelpacks/smq2Q_XYZICNOT.py +3 -3
  151. pygsti/modelpacks/smq2Q_XYZZ.py +1 -1
  152. pygsti/modelpacks/stdtarget.py +0 -121
  153. pygsti/models/cloudnoisemodel.py +1 -2
  154. pygsti/models/explicitcalc.py +3 -3
  155. pygsti/models/explicitmodel.py +3 -13
  156. pygsti/models/fogistore.py +5 -3
  157. pygsti/models/localnoisemodel.py +1 -2
  158. pygsti/models/memberdict.py +0 -12
  159. pygsti/models/model.py +801 -68
  160. pygsti/models/modelconstruction.py +4 -4
  161. pygsti/models/modelnoise.py +2 -2
  162. pygsti/models/modelparaminterposer.py +1 -1
  163. pygsti/models/oplessmodel.py +1 -1
  164. pygsti/models/qutrit.py +15 -14
  165. pygsti/objectivefns/objectivefns.py +75 -140
  166. pygsti/objectivefns/wildcardbudget.py +2 -7
  167. pygsti/optimize/__init__.py +1 -0
  168. pygsti/optimize/arraysinterface.py +28 -0
  169. pygsti/optimize/customcg.py +0 -12
  170. pygsti/optimize/customlm.py +129 -323
  171. pygsti/optimize/customsolve.py +2 -2
  172. pygsti/optimize/optimize.py +0 -84
  173. pygsti/optimize/simplerlm.py +841 -0
  174. pygsti/optimize/wildcardopt.py +19 -598
  175. pygsti/protocols/confidenceregionfactory.py +28 -14
  176. pygsti/protocols/estimate.py +31 -14
  177. pygsti/protocols/gst.py +238 -142
  178. pygsti/protocols/modeltest.py +19 -12
  179. pygsti/protocols/protocol.py +9 -37
  180. pygsti/protocols/rb.py +450 -79
  181. pygsti/protocols/treenode.py +8 -2
  182. pygsti/protocols/vb.py +108 -206
  183. pygsti/protocols/vbdataframe.py +1 -1
  184. pygsti/report/factory.py +0 -15
  185. pygsti/report/fogidiagram.py +1 -17
  186. pygsti/report/modelfunction.py +12 -3
  187. pygsti/report/mpl_colormaps.py +1 -1
  188. pygsti/report/plothelpers.py +11 -3
  189. pygsti/report/report.py +16 -0
  190. pygsti/report/reportables.py +41 -37
  191. pygsti/report/templates/offline/pygsti_dashboard.css +6 -0
  192. pygsti/report/templates/offline/pygsti_dashboard.js +12 -0
  193. pygsti/report/workspace.py +2 -14
  194. pygsti/report/workspaceplots.py +328 -505
  195. pygsti/tools/basistools.py +9 -36
  196. pygsti/tools/edesigntools.py +124 -96
  197. pygsti/tools/fastcalc.cpython-38-i386-linux-gnu.so +0 -0
  198. pygsti/tools/fastcalc.pyx +35 -81
  199. pygsti/tools/internalgates.py +151 -15
  200. pygsti/tools/jamiolkowski.py +5 -5
  201. pygsti/tools/lindbladtools.py +19 -11
  202. pygsti/tools/listtools.py +0 -114
  203. pygsti/tools/matrixmod2.py +1 -1
  204. pygsti/tools/matrixtools.py +173 -339
  205. pygsti/tools/nameddict.py +1 -1
  206. pygsti/tools/optools.py +154 -88
  207. pygsti/tools/pdftools.py +0 -25
  208. pygsti/tools/rbtheory.py +3 -320
  209. pygsti/tools/slicetools.py +64 -12
  210. pyGSTi-0.9.12.dist-info/METADATA +0 -157
  211. pygsti/algorithms/directx.py +0 -711
  212. pygsti/evotypes/qibo/__init__.py +0 -33
  213. pygsti/evotypes/qibo/effectreps.py +0 -78
  214. pygsti/evotypes/qibo/opreps.py +0 -376
  215. pygsti/evotypes/qibo/povmreps.py +0 -98
  216. pygsti/evotypes/qibo/statereps.py +0 -174
  217. pygsti/extras/rb/__init__.py +0 -13
  218. pygsti/extras/rb/benchmarker.py +0 -957
  219. pygsti/extras/rb/dataset.py +0 -378
  220. pygsti/extras/rb/io.py +0 -814
  221. pygsti/extras/rb/simulate.py +0 -1020
  222. pygsti/io/legacyio.py +0 -385
  223. pygsti/modelmembers/povms/denseeffect.py +0 -142
  224. {pyGSTi-0.9.12.dist-info → pyGSTi-0.9.13.dist-info}/LICENSE +0 -0
  225. {pyGSTi-0.9.12.dist-info → pyGSTi-0.9.13.dist-info}/top_level.txt +0 -0
pyGSTi-0.9.13.dist-info/METADATA ADDED
@@ -0,0 +1,185 @@
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+ Metadata-Version: 2.1
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+ Name: pyGSTi
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+ Version: 0.9.13
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+ Summary: A python implementation of Gate Set Tomography
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+ Home-page: http://www.pygsti.info
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+ Download-URL: https://github.com/pyGSTio/pyGSTi/tarball/master
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+ Author: Erik Nielsen, Stefan Seritan, Corey Ostrove, Riley Murray, Jordan Hines, Kenneth Rudinger, Timothy Proctor, John Gamble, Robin Blume-Kohout
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+ Author-email: pygsti@sandia.gov
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+ Keywords: pygsti,tomography,gate set,pigsty,pig,quantum,qubit
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+ Platform: any
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+ Classifier: Development Status :: 4 - Beta
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+ Classifier: Intended Audience :: Science/Research
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+ Classifier: License :: OSI Approved :: Apache Software License
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+ Classifier: Programming Language :: Python
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+ Classifier: Topic :: Scientific/Engineering :: Physics
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+ Classifier: Operating System :: Microsoft :: Windows
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+ Classifier: Operating System :: MacOS :: MacOS X
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+ Classifier: Operating System :: Unix
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+ Requires-Python: >=3.8
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+ License-File: LICENSE
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+ Requires-Dist: numpy>=1.15.0
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+ Requires-Dist: scipy
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+ Requires-Dist: plotly
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+ Requires-Dist: pandas
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+ Requires-Dist: networkx
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+ Provides-Extra: complete
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+ Requires-Dist: notebook; extra == "testing"
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+ Requires-Dist: ipython; extra == "testing"
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+ Requires-Dist: jupyter-server; extra == "testing"
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+ Requires-Dist: torch; extra == "testing"
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+ Provides-Extra: testing_no_cython
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+ Requires-Dist: pytest; extra == "testing-no-cython"
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+ Requires-Dist: pytest-xdist; extra == "testing-no-cython"
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+ Requires-Dist: pytest-cov; extra == "testing-no-cython"
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+ Requires-Dist: nbval; extra == "testing-no-cython"
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+ Requires-Dist: csaps; extra == "testing-no-cython"
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+ Requires-Dist: cvxopt; extra == "testing-no-cython"
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+ Requires-Dist: cvxpy; extra == "testing-no-cython"
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+ Requires-Dist: matplotlib; extra == "testing-no-cython"
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+ Requires-Dist: mpi4py; extra == "testing-no-cython"
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+ Requires-Dist: msgpack; extra == "testing-no-cython"
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+ Requires-Dist: packaging; extra == "testing-no-cython"
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+ Requires-Dist: pandas; extra == "testing-no-cython"
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+ Requires-Dist: psutil; extra == "testing-no-cython"
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+ Requires-Dist: seaborn; extra == "testing-no-cython"
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+ Requires-Dist: scipy; extra == "testing-no-cython"
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+ Requires-Dist: ply; extra == "testing-no-cython"
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+ Requires-Dist: notebook; extra == "testing-no-cython"
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+ Requires-Dist: ipython; extra == "testing-no-cython"
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+ Requires-Dist: torch; extra == "testing-no-cython"
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+
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+ Gate set tomography (GST) is a quantum tomography protocol that provides full characterization of a quantum logic device
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+ (e.g. a qubit). GST estimates a set of quantum logic gates and (simultaneously) the associated state preparation and
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+ measurement (SPAM) operations. GST is self-calibrating. This eliminates a key limitation of traditional quantum state
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+ and process tomography, which characterize either states (assuming perfect processes) or processes (assuming perfect
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+ state preparation and measurement), but not both together. Compared with benchmarking protocols such as randomized
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+ benchmarking, GST provides much more detailed and accurate information about the gates, but demands more data. The
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+ primary downside of GST has been its complexity. Whereas benchmarking and state/process tomography data can be analyzed
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+ with relatively simple algorithms, GST requires more complex algorithms and more fine-tuning (linear GST is an exception
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+ that can be implemented easily). pyGSTi addresses and eliminates this obstacle by providing a fully-featured, publicly
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+ available implementation of GST in the Python programming language.
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+
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+ The primary goals of the pyGSTi project are to:
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+
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+ - provide efficient and robust implementations of Gate Set Tomography algorithms;
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+ - allow straightforward interoperability with other software;
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+ - provide a powerful high-level interface suited to inexperienced programmers, so that
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+ common GST tasks can be performed using just one or two lines of code;
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+ - use modular design to make it easy for users to modify, customize, and extend GST functionality.