pyGSTi 0.9.12.1__cp39-cp39-win_amd64.whl → 0.9.13__cp39-cp39-win_amd64.whl
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- pyGSTi-0.9.13.dist-info/METADATA +197 -0
- {pyGSTi-0.9.12.1.dist-info → pyGSTi-0.9.13.dist-info}/RECORD +207 -217
- {pyGSTi-0.9.12.1.dist-info → pyGSTi-0.9.13.dist-info}/WHEEL +1 -1
- pygsti/_version.py +2 -2
- pygsti/algorithms/contract.py +1 -1
- pygsti/algorithms/core.py +42 -28
- pygsti/algorithms/fiducialselection.py +17 -8
- pygsti/algorithms/gaugeopt.py +2 -2
- pygsti/algorithms/germselection.py +87 -77
- pygsti/algorithms/mirroring.py +0 -388
- pygsti/algorithms/randomcircuit.py +165 -1333
- pygsti/algorithms/rbfit.py +0 -234
- pygsti/baseobjs/basis.py +94 -396
- pygsti/baseobjs/errorgenbasis.py +0 -132
- pygsti/baseobjs/errorgenspace.py +0 -10
- pygsti/baseobjs/label.py +52 -168
- pygsti/baseobjs/opcalc/fastopcalc.cp39-win_amd64.pyd +0 -0
- pygsti/baseobjs/opcalc/fastopcalc.pyx +2 -2
- pygsti/baseobjs/polynomial.py +13 -595
- pygsti/baseobjs/statespace.py +1 -0
- pygsti/circuits/__init__.py +1 -1
- pygsti/circuits/circuit.py +682 -505
- pygsti/circuits/circuitconstruction.py +0 -4
- pygsti/circuits/circuitlist.py +47 -5
- pygsti/circuits/circuitparser/__init__.py +8 -8
- pygsti/circuits/circuitparser/fastcircuitparser.cp39-win_amd64.pyd +0 -0
- pygsti/circuits/circuitstructure.py +3 -3
- pygsti/circuits/cloudcircuitconstruction.py +1 -1
- pygsti/data/datacomparator.py +2 -7
- pygsti/data/dataset.py +46 -44
- pygsti/data/hypothesistest.py +0 -7
- pygsti/drivers/bootstrap.py +0 -49
- pygsti/drivers/longsequence.py +2 -1
- pygsti/evotypes/basereps_cython.cp39-win_amd64.pyd +0 -0
- pygsti/evotypes/chp/opreps.py +0 -61
- pygsti/evotypes/chp/statereps.py +0 -32
- pygsti/evotypes/densitymx/effectcreps.cpp +9 -10
- pygsti/evotypes/densitymx/effectreps.cp39-win_amd64.pyd +0 -0
- pygsti/evotypes/densitymx/effectreps.pyx +1 -1
- pygsti/evotypes/densitymx/opreps.cp39-win_amd64.pyd +0 -0
- pygsti/evotypes/densitymx/opreps.pyx +2 -2
- pygsti/evotypes/densitymx/statereps.cp39-win_amd64.pyd +0 -0
- pygsti/evotypes/densitymx/statereps.pyx +1 -1
- pygsti/evotypes/densitymx_slow/effectreps.py +7 -23
- pygsti/evotypes/densitymx_slow/opreps.py +16 -23
- pygsti/evotypes/densitymx_slow/statereps.py +10 -3
- pygsti/evotypes/evotype.py +39 -2
- pygsti/evotypes/stabilizer/effectreps.cp39-win_amd64.pyd +0 -0
- pygsti/evotypes/stabilizer/effectreps.pyx +0 -4
- pygsti/evotypes/stabilizer/opreps.cp39-win_amd64.pyd +0 -0
- pygsti/evotypes/stabilizer/opreps.pyx +0 -4
- pygsti/evotypes/stabilizer/statereps.cp39-win_amd64.pyd +0 -0
- pygsti/evotypes/stabilizer/statereps.pyx +1 -5
- pygsti/evotypes/stabilizer/termreps.cp39-win_amd64.pyd +0 -0
- pygsti/evotypes/stabilizer/termreps.pyx +0 -7
- pygsti/evotypes/stabilizer_slow/effectreps.py +0 -22
- pygsti/evotypes/stabilizer_slow/opreps.py +0 -4
- pygsti/evotypes/stabilizer_slow/statereps.py +0 -4
- pygsti/evotypes/statevec/effectreps.cp39-win_amd64.pyd +0 -0
- pygsti/evotypes/statevec/effectreps.pyx +1 -1
- pygsti/evotypes/statevec/opreps.cp39-win_amd64.pyd +0 -0
- pygsti/evotypes/statevec/opreps.pyx +2 -2
- pygsti/evotypes/statevec/statereps.cp39-win_amd64.pyd +0 -0
- pygsti/evotypes/statevec/statereps.pyx +1 -1
- pygsti/evotypes/statevec/termreps.cp39-win_amd64.pyd +0 -0
- pygsti/evotypes/statevec/termreps.pyx +0 -7
- pygsti/evotypes/statevec_slow/effectreps.py +0 -3
- pygsti/evotypes/statevec_slow/opreps.py +0 -5
- pygsti/extras/__init__.py +0 -1
- pygsti/extras/drift/stabilityanalyzer.py +3 -1
- pygsti/extras/interpygate/__init__.py +12 -0
- pygsti/extras/interpygate/core.py +0 -36
- pygsti/extras/interpygate/process_tomography.py +44 -10
- pygsti/extras/rpe/rpeconstruction.py +0 -2
- pygsti/forwardsims/__init__.py +1 -0
- pygsti/forwardsims/forwardsim.py +14 -55
- pygsti/forwardsims/mapforwardsim.py +69 -18
- pygsti/forwardsims/mapforwardsim_calc_densitymx.cp39-win_amd64.pyd +0 -0
- pygsti/forwardsims/mapforwardsim_calc_densitymx.pyx +65 -66
- pygsti/forwardsims/mapforwardsim_calc_generic.py +91 -13
- pygsti/forwardsims/matrixforwardsim.py +63 -15
- pygsti/forwardsims/termforwardsim.py +8 -110
- pygsti/forwardsims/termforwardsim_calc_stabilizer.cp39-win_amd64.pyd +0 -0
- pygsti/forwardsims/termforwardsim_calc_statevec.cp39-win_amd64.pyd +0 -0
- pygsti/forwardsims/termforwardsim_calc_statevec.pyx +0 -651
- pygsti/forwardsims/torchfwdsim.py +265 -0
- pygsti/forwardsims/weakforwardsim.py +2 -2
- pygsti/io/__init__.py +1 -2
- pygsti/io/mongodb.py +0 -2
- pygsti/io/stdinput.py +6 -22
- pygsti/layouts/copalayout.py +10 -12
- pygsti/layouts/distlayout.py +0 -40
- pygsti/layouts/maplayout.py +103 -25
- pygsti/layouts/matrixlayout.py +99 -60
- pygsti/layouts/prefixtable.py +1534 -52
- pygsti/layouts/termlayout.py +1 -1
- pygsti/modelmembers/instruments/instrument.py +3 -3
- pygsti/modelmembers/instruments/tpinstrument.py +2 -2
- pygsti/modelmembers/modelmember.py +0 -17
- pygsti/modelmembers/operations/__init__.py +2 -4
- pygsti/modelmembers/operations/affineshiftop.py +1 -0
- pygsti/modelmembers/operations/composederrorgen.py +1 -1
- pygsti/modelmembers/operations/composedop.py +1 -24
- pygsti/modelmembers/operations/denseop.py +5 -5
- pygsti/modelmembers/operations/eigpdenseop.py +2 -2
- pygsti/modelmembers/operations/embeddederrorgen.py +1 -1
- pygsti/modelmembers/operations/embeddedop.py +0 -1
- pygsti/modelmembers/operations/experrorgenop.py +2 -2
- pygsti/modelmembers/operations/fullarbitraryop.py +1 -0
- pygsti/modelmembers/operations/fullcptpop.py +2 -2
- pygsti/modelmembers/operations/fulltpop.py +28 -6
- pygsti/modelmembers/operations/fullunitaryop.py +5 -4
- pygsti/modelmembers/operations/lindbladcoefficients.py +93 -78
- pygsti/modelmembers/operations/lindbladerrorgen.py +268 -441
- pygsti/modelmembers/operations/linearop.py +7 -27
- pygsti/modelmembers/operations/opfactory.py +1 -1
- pygsti/modelmembers/operations/repeatedop.py +1 -24
- pygsti/modelmembers/operations/staticstdop.py +1 -1
- pygsti/modelmembers/povms/__init__.py +3 -3
- pygsti/modelmembers/povms/basepovm.py +7 -36
- pygsti/modelmembers/povms/complementeffect.py +4 -9
- pygsti/modelmembers/povms/composedeffect.py +0 -320
- pygsti/modelmembers/povms/computationaleffect.py +1 -1
- pygsti/modelmembers/povms/computationalpovm.py +3 -1
- pygsti/modelmembers/povms/effect.py +3 -5
- pygsti/modelmembers/povms/marginalizedpovm.py +0 -79
- pygsti/modelmembers/povms/tppovm.py +74 -2
- pygsti/modelmembers/states/__init__.py +2 -5
- pygsti/modelmembers/states/composedstate.py +0 -317
- pygsti/modelmembers/states/computationalstate.py +3 -3
- pygsti/modelmembers/states/cptpstate.py +4 -4
- pygsti/modelmembers/states/densestate.py +6 -4
- pygsti/modelmembers/states/fullpurestate.py +0 -24
- pygsti/modelmembers/states/purestate.py +1 -1
- pygsti/modelmembers/states/state.py +5 -6
- pygsti/modelmembers/states/tpstate.py +28 -10
- pygsti/modelmembers/term.py +3 -6
- pygsti/modelmembers/torchable.py +50 -0
- pygsti/modelpacks/_modelpack.py +1 -1
- pygsti/modelpacks/smq1Q_ZN.py +3 -1
- pygsti/modelpacks/smq2Q_XXYYII.py +2 -1
- pygsti/modelpacks/smq2Q_XY.py +3 -3
- pygsti/modelpacks/smq2Q_XYI.py +2 -2
- pygsti/modelpacks/smq2Q_XYICNOT.py +3 -3
- pygsti/modelpacks/smq2Q_XYICPHASE.py +3 -3
- pygsti/modelpacks/smq2Q_XYXX.py +1 -1
- pygsti/modelpacks/smq2Q_XYZICNOT.py +3 -3
- pygsti/modelpacks/smq2Q_XYZZ.py +1 -1
- pygsti/modelpacks/stdtarget.py +0 -121
- pygsti/models/cloudnoisemodel.py +1 -2
- pygsti/models/explicitcalc.py +3 -3
- pygsti/models/explicitmodel.py +3 -13
- pygsti/models/fogistore.py +5 -3
- pygsti/models/localnoisemodel.py +1 -2
- pygsti/models/memberdict.py +0 -12
- pygsti/models/model.py +800 -65
- pygsti/models/modelconstruction.py +4 -4
- pygsti/models/modelnoise.py +2 -2
- pygsti/models/modelparaminterposer.py +1 -1
- pygsti/models/oplessmodel.py +1 -1
- pygsti/models/qutrit.py +15 -14
- pygsti/objectivefns/objectivefns.py +73 -138
- pygsti/objectivefns/wildcardbudget.py +2 -7
- pygsti/optimize/__init__.py +1 -0
- pygsti/optimize/arraysinterface.py +28 -0
- pygsti/optimize/customcg.py +0 -12
- pygsti/optimize/customlm.py +129 -323
- pygsti/optimize/customsolve.py +2 -2
- pygsti/optimize/optimize.py +0 -84
- pygsti/optimize/simplerlm.py +841 -0
- pygsti/optimize/wildcardopt.py +19 -598
- pygsti/protocols/confidenceregionfactory.py +28 -14
- pygsti/protocols/estimate.py +31 -14
- pygsti/protocols/gst.py +142 -68
- pygsti/protocols/modeltest.py +6 -10
- pygsti/protocols/protocol.py +9 -37
- pygsti/protocols/rb.py +450 -79
- pygsti/protocols/treenode.py +8 -2
- pygsti/protocols/vb.py +108 -206
- pygsti/protocols/vbdataframe.py +1 -1
- pygsti/report/factory.py +0 -15
- pygsti/report/fogidiagram.py +1 -17
- pygsti/report/modelfunction.py +12 -3
- pygsti/report/mpl_colormaps.py +1 -1
- pygsti/report/plothelpers.py +8 -2
- pygsti/report/reportables.py +41 -37
- pygsti/report/templates/offline/pygsti_dashboard.css +6 -0
- pygsti/report/templates/offline/pygsti_dashboard.js +12 -0
- pygsti/report/workspace.py +2 -14
- pygsti/report/workspaceplots.py +326 -504
- pygsti/tools/basistools.py +9 -36
- pygsti/tools/edesigntools.py +124 -96
- pygsti/tools/fastcalc.cp39-win_amd64.pyd +0 -0
- pygsti/tools/fastcalc.pyx +35 -81
- pygsti/tools/internalgates.py +151 -15
- pygsti/tools/jamiolkowski.py +5 -5
- pygsti/tools/lindbladtools.py +19 -11
- pygsti/tools/listtools.py +0 -114
- pygsti/tools/matrixmod2.py +1 -1
- pygsti/tools/matrixtools.py +173 -339
- pygsti/tools/nameddict.py +1 -1
- pygsti/tools/optools.py +154 -88
- pygsti/tools/pdftools.py +0 -25
- pygsti/tools/rbtheory.py +3 -320
- pygsti/tools/slicetools.py +64 -12
- pyGSTi-0.9.12.1.dist-info/METADATA +0 -155
- pygsti/algorithms/directx.py +0 -711
- pygsti/evotypes/qibo/__init__.py +0 -33
- pygsti/evotypes/qibo/effectreps.py +0 -78
- pygsti/evotypes/qibo/opreps.py +0 -376
- pygsti/evotypes/qibo/povmreps.py +0 -98
- pygsti/evotypes/qibo/statereps.py +0 -174
- pygsti/extras/rb/__init__.py +0 -13
- pygsti/extras/rb/benchmarker.py +0 -957
- pygsti/extras/rb/dataset.py +0 -378
- pygsti/extras/rb/io.py +0 -814
- pygsti/extras/rb/simulate.py +0 -1020
- pygsti/io/legacyio.py +0 -385
- pygsti/modelmembers/povms/denseeffect.py +0 -142
- {pyGSTi-0.9.12.1.dist-info → pyGSTi-0.9.13.dist-info}/LICENSE +0 -0
- {pyGSTi-0.9.12.1.dist-info → pyGSTi-0.9.13.dist-info}/top_level.txt +0 -0
pygsti/protocols/protocol.py
CHANGED
@@ -1311,11 +1311,17 @@ class CombinedExperimentDesign(ExperimentDesign): # for multiple designs on the
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if all_circuits is None:
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all_circuits = []
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if
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if interleave:
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subdesign_circuit_lists = [sub_design.all_circuits_needing_data for sub_design in sub_designs.values()]
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+
#zip_longest is like zip, but if the iterables are of different lengths it returns a specified fill value
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#(default None) in place of the missing elements once an iterable has been exhausted.
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for circuits in _itertools.zip_longest(*subdesign_circuit_lists):
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for circuit in circuits:
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if circuit is not None:
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all_circuits.append(circuit)
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else:
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for des in sub_designs.values():
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all_circuits.extend(des.all_circuits_needing_data)
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else:
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raise NotImplementedError("Interleaving not implemented yet")
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_lt.remove_duplicates_in_place(all_circuits) # Maybe don't always do this?
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if qubit_labels is None and len(sub_designs) > 0:
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@@ -1458,12 +1464,6 @@ class SimultaneousExperimentDesign(ExperimentDesign):
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else:
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raise ValueError("Cannot convert a %s to a %s!" % (str(type(edesign)), str(cls)))
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#@classmethod
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#def from_tensored_circuits(cls, circuits, template_edesign, qubit_labels_per_edesign):
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# pass #Useful??? - need to break each circuit into different parts
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# based on qubits, then copy (?) template edesign and just replace itself
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# all_circuits_needing_data member?
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def __init__(self, edesigns, tensored_circuits=None, qubit_labels=None):
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"""
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Create a new SimultaneousExperimentDesign object.
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@@ -1953,9 +1953,6 @@ class ProtocolData(_TreeNode, _MongoSerializable):
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"""
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return isinstance(self.dataset, (_data.MultiDataSet, dict))
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#def underlying_tree_paths(self):
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# return self.edesign.get_tree_paths()
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def prune_tree(self, paths, paths_are_sorted=False):
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"""
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Prune the tree rooted here to include only the given paths, discarding all else.
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@@ -2545,23 +2542,6 @@ class ProtocolResultsDir(_TreeNode, _MongoSerializable):
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2. Child :class:`ProtocolResultsDir` objects, obtained by indexing this
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object directly using the name of the sub-directory.
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Parameters
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----------
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data : ProtocolData
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The data from which *all* the Results objects in this
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ProtocolResultsDir are derived.
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protocol_results : ProtocolResults, optional
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An initial (single) results object to add. The name of the
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results object is used as its key within the `.for_protocol`
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dictionary. If None, then an empty results directory is created.
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children : dict, optional
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A dictionary of the :class:`ProtocolResultsDir` objects that are
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sub-directories beneath this one. If None, then children are
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automatically created based upon the tree given by `data`. (To
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avoid creating any children, you can pass an empty dict here.)
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"""
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collection_name = "pygsti_results_directories"
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@@ -2681,14 +2661,6 @@ class ProtocolResultsDir(_TreeNode, _MongoSerializable):
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"""
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Create a new ProtocolResultsDir object.
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This container object holds two things:
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1. A `.for_protocol` dictionary of :class:`ProtocolResults` corresponding
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to different protocols (keys are protocol names).
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2. Child :class:`ProtocolResultsDir` objects, obtained by indexing this
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object directly using the name of the sub-directory.
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Parameters
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----------
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data : ProtocolData
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