pyEQL 1.4.0rc9__cp312-cp312-macosx_11_0_arm64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (491) hide show
  1. pyEQL/__init__.py +50 -0
  2. pyEQL/_phreeqc.cpython-312-darwin.so +0 -0
  3. pyEQL/activity_correction.py +879 -0
  4. pyEQL/database/geothermal.dat +5693 -0
  5. pyEQL/database/llnl.dat +19305 -0
  6. pyEQL/database/phreeqc_license.txt +54 -0
  7. pyEQL/database/pyeql_db.json +35607 -0
  8. pyEQL/engines.py +1153 -0
  9. pyEQL/equilibrium.py +227 -0
  10. pyEQL/functions.py +281 -0
  11. pyEQL/phreeqc/__init__.py +5 -0
  12. pyEQL/phreeqc/bindings.cpp +84 -0
  13. pyEQL/phreeqc/core.py +239 -0
  14. pyEQL/phreeqc/database/Amm.dat +1968 -0
  15. pyEQL/phreeqc/database/CMakeLists.txt +32 -0
  16. pyEQL/phreeqc/database/ColdChem.dat +267 -0
  17. pyEQL/phreeqc/database/Concrete_PHR.dat +158 -0
  18. pyEQL/phreeqc/database/Concrete_PZ.dat +195 -0
  19. pyEQL/phreeqc/database/Kinec.v2.dat +12039 -0
  20. pyEQL/phreeqc/database/Kinec_v3.dat +12159 -0
  21. pyEQL/phreeqc/database/Makefile.am +28 -0
  22. pyEQL/phreeqc/database/Makefile.in +530 -0
  23. pyEQL/phreeqc/database/PHREEQC_ThermoddemV1.10_15Dec2020.dat +12965 -0
  24. pyEQL/phreeqc/database/Tipping_Hurley.dat +4137 -0
  25. pyEQL/phreeqc/database/__init__.py +0 -0
  26. pyEQL/phreeqc/database/core10.dat +6824 -0
  27. pyEQL/phreeqc/database/frezchem.dat +634 -0
  28. pyEQL/phreeqc/database/iso.dat +7235 -0
  29. pyEQL/phreeqc/database/llnl.dat +19310 -0
  30. pyEQL/phreeqc/database/minteq.dat +5654 -0
  31. pyEQL/phreeqc/database/minteq.v4.dat +13212 -0
  32. pyEQL/phreeqc/database/phreeqc.dat +1972 -0
  33. pyEQL/phreeqc/database/phreeqc_rates.dat +3158 -0
  34. pyEQL/phreeqc/database/pitzer.dat +1044 -0
  35. pyEQL/phreeqc/database/sit.dat +14348 -0
  36. pyEQL/phreeqc/database/wateq4f.dat +4036 -0
  37. pyEQL/phreeqc/ext/README.md +10 -0
  38. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/CMakeLists.txt +476 -0
  39. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/INSTALL +302 -0
  40. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/IPhreeqc.rc +61 -0
  41. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/IPhreeqcConfig.cmake.in +4 -0
  42. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/Makefile.am +8 -0
  43. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/Makefile.in +816 -0
  44. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/aclocal.m4 +1217 -0
  45. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/CMakeFiles/CTestScript.cmake +167 -0
  46. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/CMakeFiles/IPhreeqc.dir/src/CSelectedOutput.cpp.o +0 -0
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  48. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/CMakeFiles/IPhreeqc.dir/src/IPhreeqcLib.cpp.o +0 -0
  49. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/CMakeFiles/IPhreeqc.dir/src/IPhreeqc_interface_F.cpp.o +0 -0
  50. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/CMakeFiles/IPhreeqc.dir/src/Var.c.o +0 -0
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  372. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SelectedOutput.h +209 -0
  373. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Serializer.cxx +213 -0
  374. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Serializer.h +42 -0
  375. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Solution.cxx +1795 -0
  376. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Solution.h +154 -0
  377. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SolutionIsotope.cxx +333 -0
  378. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SolutionIsotope.h +85 -0
  379. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/StorageBin.cxx +1507 -0
  380. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/StorageBin.h +141 -0
  381. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/StorageBinList.cpp +358 -0
  382. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/StorageBinList.h +81 -0
  383. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Surface.cxx +837 -0
  384. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Surface.h +108 -0
  385. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SurfaceCharge.cxx +617 -0
  386. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SurfaceCharge.h +137 -0
  387. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SurfaceComp.cxx +509 -0
  388. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SurfaceComp.h +70 -0
  389. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/System.cxx +103 -0
  390. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/System.h +89 -0
  391. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Temperature.cxx +423 -0
  392. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Temperature.h +42 -0
  393. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Use.cpp +78 -0
  394. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Use.h +159 -0
  395. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/UserPunch.cpp +32 -0
  396. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/UserPunch.h +39 -0
  397. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/ZedGraph.dll +0 -0
  398. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/advection.cpp +140 -0
  399. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/basicsubs.cpp +4333 -0
  400. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cl1.cpp +881 -0
  401. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/PHRQ_base.cxx +117 -0
  402. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/PHRQ_base.h +48 -0
  403. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/PHRQ_exports.h +20 -0
  404. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/PHRQ_io.cpp +914 -0
  405. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/PHRQ_io.h +207 -0
  406. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/Parser.cxx +1331 -0
  407. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/Parser.h +310 -0
  408. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/Utils.cxx +263 -0
  409. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/Utils.h +29 -0
  410. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/phrqtype.h +18 -0
  411. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cvdense.cpp +566 -0
  412. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cvdense.h +267 -0
  413. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cvode.cpp +3939 -0
  414. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cvode.h +940 -0
  415. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cxxKinetics.cxx +617 -0
  416. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cxxKinetics.h +78 -0
  417. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cxxMix.cxx +154 -0
  418. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cxxMix.h +58 -0
  419. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/dense.cpp +175 -0
  420. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/dense.h +341 -0
  421. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/dumper.cpp +277 -0
  422. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/dumper.h +60 -0
  423. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/gases.cpp +748 -0
  424. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/global_structures.h +1672 -0
  425. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/input.cpp +133 -0
  426. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/integrate.cpp +1219 -0
  427. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/inverse.cpp +5135 -0
  428. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/isotopes.cpp +1813 -0
  429. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/kinetics.cpp +3180 -0
  430. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/mainsubs.cpp +2320 -0
  431. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/model.cpp +5843 -0
  432. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/nvector.cpp +272 -0
  433. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/nvector.h +485 -0
  434. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/nvector_serial.cpp +1032 -0
  435. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/nvector_serial.h +369 -0
  436. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/parse.cpp +1044 -0
  437. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/phqalloc.cpp +316 -0
  438. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/phqalloc.h +47 -0
  439. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/pitzer.cpp +2709 -0
  440. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/pitzer_structures.cpp +225 -0
  441. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/prep.cpp +6267 -0
  442. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/print.cpp +3673 -0
  443. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/read.cpp +10245 -0
  444. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/readtr.cpp +1495 -0
  445. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/runner.cpp +158 -0
  446. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/runner.h +33 -0
  447. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/sit.cpp +1684 -0
  448. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/smalldense.cpp +324 -0
  449. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/smalldense.h +261 -0
  450. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/spread.cpp +1309 -0
  451. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/step.cpp +1566 -0
  452. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/structures.cpp +3381 -0
  453. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/sundialsmath.cpp +133 -0
  454. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/sundialsmath.h +162 -0
  455. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/sundialstypes.h +183 -0
  456. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/tally.cpp +1288 -0
  457. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/tidy.cpp +5600 -0
  458. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/transport.cpp +6403 -0
  459. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/utilities.cpp +1339 -0
  460. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/thread.h +64 -0
  461. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/CMakeLists.txt +133 -0
  462. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/Makefile.am +45 -0
  463. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/Makefile.in +1128 -0
  464. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/ex2.in +26 -0
  465. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/main.f90 +31 -0
  466. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/main77.f +6 -0
  467. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/main_fortran.cxx +8 -0
  468. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/phreeqc.dat.in +1556 -0
  469. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/test_c.c +148 -0
  470. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/test_cxx.cxx +152 -0
  471. pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/test_f90.F90 +328 -0
  472. pyEQL/phreeqc/iphreeqc_wrapper.cpp +75 -0
  473. pyEQL/phreeqc/solution.py +74 -0
  474. pyEQL/phreeqc/var.py +50 -0
  475. pyEQL/presets/Ringers lactate.yaml +20 -0
  476. pyEQL/presets/__init__.py +17 -0
  477. pyEQL/presets/normal saline.yaml +17 -0
  478. pyEQL/presets/rainwater.yaml +17 -0
  479. pyEQL/presets/seawater.yaml +29 -0
  480. pyEQL/presets/urine.yaml +26 -0
  481. pyEQL/presets/wastewater.yaml +21 -0
  482. pyEQL/py.typed +0 -0
  483. pyEQL/salt_ion_match.py +112 -0
  484. pyEQL/solute.py +163 -0
  485. pyEQL/solution.py +2714 -0
  486. pyEQL/utils.py +237 -0
  487. pyeql-1.4.0rc9.dist-info/METADATA +130 -0
  488. pyeql-1.4.0rc9.dist-info/RECORD +491 -0
  489. pyeql-1.4.0rc9.dist-info/WHEEL +6 -0
  490. pyeql-1.4.0rc9.dist-info/licenses/AUTHORS.md +21 -0
  491. pyeql-1.4.0rc9.dist-info/licenses/LICENSE.txt +20 -0
@@ -0,0 +1,36 @@
1
+ <?xml version="1.0" encoding="utf-8"?>
2
+ <root>
3
+ <!-- In Managed Resources,
4
+ set Resource File Name:
5
+ $(IntDir)\zdg_ui2.$(InputName).resources
6
+ in VS2012: compile with resgen.exe:
7
+ click Start, All Programs, Visual Studio 20**, Visual Studio Tools, Visual Studio Command Prompt
8
+ resgen path**.Form1.resX
9
+ -->
10
+ <resheader name="resmimetype">
11
+ <value>text/microsoft-resx</value>
12
+ </resheader>
13
+ <resheader name="version">
14
+ <value>2.0</value>
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+ </resheader>
16
+ <resheader name="reader">
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+ <value>System.Resources.ResXResourceReader, System.Windows.Forms, Version=4.0.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089</value>
18
+ </resheader>
19
+ <resheader name="writer">
20
+ <value>System.Resources.ResXResourceWriter, System.Windows.Forms, Version=4.0.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089</value>
21
+ </resheader>
22
+ <metadata name="imageList1.TrayLocation" type="System.Drawing.Point, System.Drawing, Version=4.0.0.0, Culture=neutral, PublicKeyToken=b03f5f7f11d50a3a">
23
+ <value>17, 17</value>
24
+ </metadata>
25
+ <assembly alias="System.Drawing" name="System.Drawing, Version=4.0.0.0, Culture=neutral, PublicKeyToken=b03f5f7f11d50a3a" />
26
+ <data name="$this.Icon" type="System.Drawing.Icon, System.Drawing" mimetype="application/x-microsoft.net.object.bytearray.base64">
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+ <value>
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+ AAABAAEAEBAQAAEABAAoAQAAFgAAACgAAAAQAAAAIAAAAAEABAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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+ AAAAAP8AMzOaAGgymgA0Mc0AmWVoAGdlmwBjZssAy5kvAP+ZNQDLmmMAzpmVAP/MLQDLzWUA/8xjAP3/
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+ mAAAAAAAiIiIiIiIiIiIgAAIhIiIhHAAAAB3KXcXcAeQAAeTk5fQDd0ADdoK3b27uwALugm7u7u7AAtz
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+ k9vbuwAAu2u7Xbu7AAva29u5zMzAAMzMzMzu7u4ADu7szOAO7gAO7u7u4ADuAA7u7u7uAAAA7u7u7u7g
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+ AA7u7u7u7u7u7u7u7u4AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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+ AAAAAAAAAAAAAAAAAAAAAAAA
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+ </value>
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+ </data>
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+ </root>
@@ -0,0 +1,265 @@
1
+ // GasComp.cxx: implementation of the cxxGasComp class.
2
+ //
3
+ //////////////////////////////////////////////////////////////////////
4
+ #ifdef _DEBUG
5
+ #pragma warning(disable : 4786) // disable truncation warning (Only used by debugger)
6
+ #endif
7
+ #include <iostream> // std::cout std::cerr
8
+ #include <cassert> // assert
9
+ #include <algorithm> // std::sort
10
+ #include <float.h>
11
+
12
+ #include "Utils.h" // define first
13
+ #include "Phreeqc.h"
14
+ #include "GasComp.h"
15
+ #include "phqalloc.h"
16
+ #include "Dictionary.h"
17
+
18
+ #if defined(PHREEQCI_GUI)
19
+ #ifdef _DEBUG
20
+ #define new DEBUG_NEW
21
+ #undef THIS_FILE
22
+ static char THIS_FILE[] = __FILE__;
23
+ #endif
24
+ #endif
25
+
26
+ //////////////////////////////////////////////////////////////////////
27
+ // Construction/Destruction
28
+ //////////////////////////////////////////////////////////////////////
29
+
30
+ cxxGasComp::cxxGasComp(PHRQ_io *io)
31
+ //
32
+ // default constructor for cxxExchComp
33
+ //
34
+ : PHRQ_base(io)
35
+ {
36
+ p_read = 0.0;
37
+ moles = 0.0;
38
+ initial_moles = 0.0;
39
+ p = 0.0;
40
+ phi = 0.0;
41
+ f = 0.0;
42
+ }
43
+
44
+ cxxGasComp::~cxxGasComp()
45
+ {
46
+ }
47
+
48
+ void
49
+ cxxGasComp::dump_raw(std::ostream & s_oss, unsigned int indent) const
50
+ {
51
+ unsigned int i;
52
+ s_oss.precision(DBL_DIG - 1);
53
+ std::string indent0(""), indent1(""), indent2("");
54
+ for (i = 0; i < indent; ++i)
55
+ indent0.append(Utilities::INDENT);
56
+ for (i = 0; i < indent + 1; ++i)
57
+ indent1.append(Utilities::INDENT);
58
+ for (i = 0; i < indent + 2; ++i)
59
+ indent2.append(Utilities::INDENT);
60
+ s_oss << indent0 << "# GAS_PHASE_MODIFY candidate identifiers #\n";
61
+ s_oss << indent0 << "-moles " << this->moles << "\n";
62
+
63
+ s_oss << indent0 << "# GAS_PHASE_MODIFY candidate identifiers with new_def=true #\n";
64
+ s_oss << indent0 << "-p_read " << this->p_read << "\n";
65
+
66
+ s_oss << indent0 << "# GasComp workspace variables #\n";
67
+ s_oss << indent0 << "-initial_moles " << this->initial_moles << "\n";
68
+ s_oss << indent0 << "-p " << this->p << "\n";
69
+ s_oss << indent0 << "-phi " << this->phi << "\n";
70
+ s_oss << indent0 << "-f " << this->f << "\n";
71
+ }
72
+
73
+ bool
74
+ cxxGasComp::read_raw(CParser & parser, bool check)
75
+ {
76
+ std::string str;
77
+
78
+ int errors = parser.get_input_error();
79
+
80
+ std::istream::pos_type ptr;
81
+ std::istream::pos_type next_char;
82
+ std::string token;
83
+
84
+ bool moles_defined(false);
85
+ int opt;
86
+ for (;;)
87
+ {
88
+ opt = parser.get_option(vopts, next_char);
89
+
90
+ switch (opt)
91
+ {
92
+ case CParser::OPT_EOF:
93
+ break;
94
+ case CParser::OPT_KEYWORD:
95
+ break;
96
+ case CParser::OPT_DEFAULT:
97
+ case CParser::OPT_ERROR:
98
+ opt = CParser::OPT_KEYWORD;
99
+ // Allow return to Exchange for more processing
100
+ break;
101
+
102
+ case 0: // phase_name
103
+ output_msg("-phase_name is obsolete. Define with -component\n");
104
+ break;
105
+
106
+ case 1: // name
107
+ output_msg("-name is obsolete. Define with -component\n");
108
+ break;
109
+
110
+ case 2: // p_read
111
+ if (!(parser.get_iss() >> this->p_read))
112
+ {
113
+ this->p_read = 0;
114
+ parser.incr_input_error();
115
+ parser.error_msg("Expected numeric value for initial partial pressure.",
116
+ PHRQ_io::OT_CONTINUE);
117
+ }
118
+ break;
119
+
120
+ case 3: // moles
121
+ if (!(parser.get_iss() >> this->moles))
122
+ {
123
+ this->moles = 0;
124
+ parser.incr_input_error();
125
+ parser.error_msg("Expected numeric value for moles.",
126
+ PHRQ_io::OT_CONTINUE);
127
+ }
128
+ moles_defined = true;
129
+ break;
130
+
131
+ case 4: // initial_moles
132
+ if (!(parser.get_iss() >> this->initial_moles))
133
+ {
134
+ this->initial_moles = 0;
135
+ parser.incr_input_error();
136
+ parser.error_msg("Expected numeric value for initial_moles.",
137
+ PHRQ_io::OT_CONTINUE);
138
+ }
139
+ break;
140
+
141
+ case 5: // p
142
+ if (!(parser.get_iss() >> this->p))
143
+ {
144
+ this->p = 0;
145
+ parser.incr_input_error();
146
+ parser.error_msg("Expected numeric value for pressure.",
147
+ PHRQ_io::OT_CONTINUE);
148
+ }
149
+ break;
150
+
151
+ case 6: // phi
152
+ if (!(parser.get_iss() >> this->phi))
153
+ {
154
+ this->phi = 0;
155
+ parser.incr_input_error();
156
+ parser.error_msg("Expected numeric value for phi.",
157
+ PHRQ_io::OT_CONTINUE);
158
+ }
159
+ break;
160
+
161
+ case 7: // f
162
+ if (!(parser.get_iss() >> this->f))
163
+ {
164
+ this->f = 0;
165
+ parser.incr_input_error();
166
+ parser.error_msg("Expected numeric value for f.",
167
+ PHRQ_io::OT_CONTINUE);
168
+ }
169
+ break;
170
+
171
+ }
172
+ if (opt == CParser::OPT_EOF || opt == CParser::OPT_KEYWORD)
173
+ break;
174
+ }
175
+ if (check)
176
+ {
177
+ // members that must be defined
178
+ if (moles_defined == false)
179
+ {
180
+ parser.incr_input_error();
181
+ parser.error_msg("Moles not defined for GasComp input.",
182
+ PHRQ_io::OT_CONTINUE);
183
+ }
184
+ }
185
+ return (parser.get_input_error() == errors);
186
+ }
187
+ void
188
+ cxxGasComp::add(const cxxGasComp & addee, LDBLE extensive)
189
+ {
190
+ //LDBLE ext1, ext2;
191
+ if (extensive == 0.0)
192
+ return;
193
+ if (addee.phase_name.size() == 0)
194
+ return;
195
+
196
+ double f1, f2;
197
+ double ext1 = this->moles;
198
+ double ext2 = addee.moles * extensive;
199
+ if (ext1 + ext2 != 0)
200
+ {
201
+ f1 = ext1 / (ext1 + ext2);
202
+ f2 = ext2 / (ext1 + ext2);
203
+ }
204
+ else
205
+ {
206
+ f1 = 0.5;
207
+ f2 = 0.5;
208
+ }
209
+
210
+ assert(this->phase_name == addee.phase_name);
211
+
212
+ this->p_read = this->p_read*f1 + addee.p_read * f2;
213
+ this->moles += addee.moles * extensive;
214
+ this->initial_moles += addee.initial_moles * extensive;
215
+ this->p = this->p * f1 + addee.p * f2;
216
+ this->phi = this->phi * f1 + addee.phi * f2;
217
+ this->f = this->f * f1 + addee.f * f2;
218
+ }
219
+
220
+ void
221
+ cxxGasComp::multiply(LDBLE extensive)
222
+ {
223
+ this->p_read *= extensive;
224
+ this->moles *= extensive;
225
+ this->initial_moles *= extensive;
226
+ this->p *= 1.0;
227
+ this->phi *= 1.0;
228
+ this->f *= 1.0;
229
+ }
230
+ void
231
+ cxxGasComp::Serialize(Dictionary & dictionary, std::vector < int >&ints, std::vector < double >&doubles)
232
+ {
233
+ ints.push_back(dictionary.Find(this->phase_name));
234
+ doubles.push_back(this->moles);
235
+ doubles.push_back(this->p_read);
236
+ doubles.push_back(this->initial_moles);
237
+ doubles.push_back(this->p);
238
+ doubles.push_back(this->phi);
239
+ doubles.push_back(this->f);
240
+ }
241
+
242
+ void
243
+ cxxGasComp::Deserialize(Dictionary & dictionary, std::vector < int >&ints,
244
+ std::vector < double >&doubles, int &ii, int &dd)
245
+ {
246
+ this->phase_name = dictionary.GetWords()[ints[ii++]];
247
+ this->moles = doubles[dd++];
248
+ this->p_read = doubles[dd++];
249
+ this->initial_moles = doubles[dd++];
250
+ this->p = doubles[dd++];
251
+ this->phi = doubles[dd++];
252
+ this->f = doubles[dd++];
253
+ }
254
+
255
+ const std::vector< std::string >::value_type temp_vopts[] = {
256
+ std::vector< std::string >::value_type("phase_name"), // 0
257
+ std::vector< std::string >::value_type("name"), // 1
258
+ std::vector< std::string >::value_type("p_read"), // 2
259
+ std::vector< std::string >::value_type("moles"), // 3
260
+ std::vector< std::string >::value_type("initial_moles"), // 4
261
+ std::vector< std::string >::value_type("p"), // 5
262
+ std::vector< std::string >::value_type("phi"), // 6
263
+ std::vector< std::string >::value_type("f") // 7
264
+ };
265
+ const std::vector< std::string > cxxGasComp::vopts(temp_vopts, temp_vopts + sizeof temp_vopts / sizeof temp_vopts[0]);
@@ -0,0 +1,59 @@
1
+ #if !defined(GASCOMP_H_INCLUDED)
2
+ #define GASCOMP_H_INCLUDED
3
+
4
+ #include <cassert> // assert
5
+ #include <map> // std::map
6
+ #include <string> // std::string
7
+ #include <list> // std::list
8
+ #include <vector> // std::vector
9
+
10
+ #include "NameDouble.h"
11
+
12
+ class cxxGasComp: public PHRQ_base
13
+ {
14
+
15
+ public:
16
+ cxxGasComp(PHRQ_io *io=NULL);
17
+
18
+ virtual ~cxxGasComp();
19
+
20
+
21
+ void dump_raw(std::ostream & s_oss, unsigned int indent) const;
22
+
23
+ bool read_raw(CParser & parser, bool check=true);
24
+
25
+ std::string Get_phase_name(void) const {return this->phase_name;}
26
+ void Set_phase_name(std::string s) {this->phase_name = s;}
27
+ LDBLE Get_p_read() const {return this->p_read;}
28
+ void Set_p_read(LDBLE t) {this->p_read = t;}
29
+ LDBLE Get_moles() const {return this->moles;}
30
+ void Set_moles(LDBLE t) {this->moles = t;}
31
+ LDBLE Get_p() const { return this->p; }
32
+ void Set_p(LDBLE t) { this->p = t; }
33
+ LDBLE Get_phi() const { return this->phi; }
34
+ void Set_phi(LDBLE t) { this->phi = t; }
35
+ LDBLE Get_f() const { return this->f; }
36
+ void Set_f(LDBLE t) { this->f = t; }
37
+ LDBLE Get_initial_moles() const {return this->initial_moles;}
38
+ void Set_initial_moles(LDBLE t) {this->initial_moles = t;}
39
+
40
+ void add(const cxxGasComp & addee, LDBLE extensive);
41
+ void multiply(LDBLE extensive);
42
+ void Serialize(Dictionary & dictionary, std::vector < int >&ints, std::vector < double >&doubles);
43
+ void Deserialize(Dictionary & dictionary, std::vector < int >&ints, std::vector < double >&doubles, int &ii, int &dd);
44
+
45
+ protected:
46
+ std::string phase_name;
47
+ // GAS_PHASE_MODIFY candidates
48
+ LDBLE moles;
49
+ // GAS_PHASE_MODIFY candidates with new_def=true
50
+ LDBLE p_read;
51
+ // internal workspace
52
+ LDBLE initial_moles;
53
+ LDBLE p;
54
+ LDBLE phi;
55
+ LDBLE f;
56
+ const static std::vector < std::string > vopts;
57
+ };
58
+
59
+ #endif // !defined(GASCOMP_H_INCLUDED)