pyEQL 1.4.0rc9__cp311-cp311-macosx_11_0_arm64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- pyEQL/__init__.py +50 -0
- pyEQL/_phreeqc.cpython-311-darwin.so +0 -0
- pyEQL/activity_correction.py +879 -0
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- pyEQL/engines.py +1153 -0
- pyEQL/equilibrium.py +227 -0
- pyEQL/functions.py +281 -0
- pyEQL/phreeqc/__init__.py +5 -0
- pyEQL/phreeqc/bindings.cpp +84 -0
- pyEQL/phreeqc/core.py +239 -0
- pyEQL/phreeqc/database/Amm.dat +1968 -0
- pyEQL/phreeqc/database/CMakeLists.txt +32 -0
- pyEQL/phreeqc/database/ColdChem.dat +267 -0
- pyEQL/phreeqc/database/Concrete_PHR.dat +158 -0
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- pyEQL/phreeqc/database/__init__.py +0 -0
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- pyEQL/phreeqc/database/frezchem.dat +634 -0
- pyEQL/phreeqc/database/iso.dat +7235 -0
- pyEQL/phreeqc/database/llnl.dat +19310 -0
- pyEQL/phreeqc/database/minteq.dat +5654 -0
- pyEQL/phreeqc/database/minteq.v4.dat +13212 -0
- pyEQL/phreeqc/database/phreeqc.dat +1972 -0
- pyEQL/phreeqc/database/phreeqc_rates.dat +3158 -0
- pyEQL/phreeqc/database/pitzer.dat +1044 -0
- pyEQL/phreeqc/database/sit.dat +14348 -0
- pyEQL/phreeqc/database/wateq4f.dat +4036 -0
- pyEQL/phreeqc/ext/README.md +10 -0
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- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/Makefile.am +8 -0
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- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/integrate.cpp +1219 -0
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- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/isotopes.cpp +1813 -0
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- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/nvector.cpp +272 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/nvector.h +485 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/nvector_serial.cpp +1032 -0
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- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/prep.cpp +6267 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/print.cpp +3673 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/read.cpp +10245 -0
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- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/step.cpp +1566 -0
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- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/sundialsmath.cpp +133 -0
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- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/tidy.cpp +5600 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/transport.cpp +6403 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/utilities.cpp +1339 -0
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- pyEQL/phreeqc/iphreeqc_wrapper.cpp +75 -0
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- pyEQL/phreeqc/var.py +50 -0
- pyEQL/presets/Ringers lactate.yaml +20 -0
- pyEQL/presets/__init__.py +17 -0
- pyEQL/presets/normal saline.yaml +17 -0
- pyEQL/presets/rainwater.yaml +17 -0
- pyEQL/presets/seawater.yaml +29 -0
- pyEQL/presets/urine.yaml +26 -0
- pyEQL/presets/wastewater.yaml +21 -0
- pyEQL/py.typed +0 -0
- pyEQL/salt_ion_match.py +112 -0
- pyEQL/solute.py +163 -0
- pyEQL/solution.py +2714 -0
- pyEQL/utils.py +237 -0
- pyeql-1.4.0rc9.dist-info/METADATA +130 -0
- pyeql-1.4.0rc9.dist-info/RECORD +491 -0
- pyeql-1.4.0rc9.dist-info/WHEEL +6 -0
- pyeql-1.4.0rc9.dist-info/licenses/AUTHORS.md +21 -0
- pyeql-1.4.0rc9.dist-info/licenses/LICENSE.txt +20 -0
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#ifndef _INC_CVDENSE_H
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#define _INC_CVDENSE_H
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/**************************************************************************
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* *
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* File : cvdense.h *
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* Programmers : Scott D. Cohen, Alan C. Hindmarsh, and *
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* Radu Serban @ LLNL *
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* Version of : 26 June 2002 *
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*------------------------------------------------------------------------*
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* Copyright (c) 2002, The Regents of the University of California *
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* Produced at the Lawrence Livermore National Laboratory *
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* All rights reserved *
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* For details, see LICENSE below *
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*------------------------------------------------------------------------*
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* This is the header file for the CVODE dense linear solver, *
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* CVDENSE. *
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* *
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* Note: The type integertype must be large enough to store the *
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* value of the linear system size N. *
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* *
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*------------------------------------------------------------------------*
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* LICENSE *
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*------------------------------------------------------------------------*
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* Copyright (c) 2002, The Regents of the University of California. *
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* Produced at the Lawrence Livermore National Laboratory. *
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* Written by S.D. Cohen, A.C. Hindmarsh, R. Serban, *
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* D. Shumaker, and A.G. Taylor. *
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* UCRL-CODE-155951 (CVODE) *
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* UCRL-CODE-155950 (CVODES) *
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* UCRL-CODE-155952 (IDA) *
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* UCRL-CODE-237203 (IDAS) *
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* UCRL-CODE-155953 (KINSOL) *
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* All rights reserved. *
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* *
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* This file is part of SUNDIALS. *
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* *
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* Redistribution and use in source and binary forms, with or without *
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* modification, are permitted provided that the following conditions *
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* are met: *
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* *
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* 1. Redistributions of source code must retain the above copyright *
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* notice, this list of conditions and the disclaimer below. *
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* *
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* 2. Redistributions in binary form must reproduce the above copyright *
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* notice, this list of conditions and the disclaimer (as noted below) *
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* in the documentation and/or other materials provided with the *
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* distribution. *
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* *
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* 3. Neither the name of the UC/LLNL nor the names of its contributors *
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* may be used to endorse or promote products derived from this software *
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* without specific prior written permission. *
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* *
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* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS *
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* "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT *
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* LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS *
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* FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE *
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* REGENTS OF THE UNIVERSITY OF CALIFORNIA, THE U.S. DEPARTMENT OF ENERGY *
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* OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, *
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* LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, *
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* DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY *
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* THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT *
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* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE *
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**************************************************************************/
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#ifndef _cvdense_h
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/******************************************************************
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* *
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*----------------------------------------------------------------*
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* the iopt and ropt arrays passed to CVodeMalloc. *
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* The CVDENSE statistics are: *
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* *
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* iopt[DENSE_NJE] : number of Jacobian evaluations, i.e. of *
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* (default or user-supplied). *
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* *
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* iopt[DENSE_LRW] : size (in realtype words) of real workspace *
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* *
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******************************************************************/
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enum
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{ DENSE_NJE = CVODE_IOPT_SIZE, DENSE_LRW, DENSE_LIW };
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/******************************************************************
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* *
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* CVDENSE solver constants *
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*----------------------------------------------------------------*
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* evaluations *
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* *
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******************************************************************/
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#define CVD_MSBJ 50
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* prototype given below. Its parameters are: *
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* N is the length of all vector arguments. *
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* by a CVDenseJacFn with an approximation to the Jacobian matrix *
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* J = (df_i/dy_j) at the point (t,y). *
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* loaded. Two efficient ways to load J are: *
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* col_j = DENSE_COL(J,j); *
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* generate J_ij = the (i,j)th Jacobian element *
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* col_j[i] = J_ij; *
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* } *
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* } *
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* col_j = (J->data)[j]; *
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* for (i=0; i < N; i++) { *
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* generate J_ij = the (i,j)th Jacobian element *
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* col_j[i] = J_ij; *
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* *
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* t is the current value of the independent variable. *
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* *
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* y is the current value of the dependent variable vector, *
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* namely the predicted value of y(t). *
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165
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+
* *
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166
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+
* fy is the vector f(t,y). *
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167
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+
* *
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168
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+
* ewt is the error weight vector. *
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169
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+
* *
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170
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+
* h is a tentative step size in t. *
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171
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+
* *
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172
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+
* uround is the machine unit roundoff. *
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173
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+
* *
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174
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+
* jac_data is a pointer to user data - the same as the jac_data *
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175
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+
* parameter passed to CVDense. *
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176
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+
* *
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177
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+
* nfePtr is a pointer to the memory location containing the *
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178
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+
* CVODE problem data nfe = number of calls to f. The Jacobian *
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179
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+
* routine should update this counter by adding on the number *
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|
180
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+
* of f calls made in order to approximate the Jacobian, if any. *
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181
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+
* For example, if the routine calls f a total of N times, then *
|
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182
|
+
* the update is *nfePtr += N. *
|
|
183
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+
* *
|
|
184
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+
* vtemp1, vtemp2, and vtemp3 are pointers to memory allocated *
|
|
185
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+
* for vectors of length N which can be used by a CVDenseJacFn *
|
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186
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+
* as temporary storage or work space. *
|
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187
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+
* *
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188
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+
******************************************************************/
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|
189
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+
|
|
190
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+
typedef void (*CVDenseJacFn) (integertype N, DenseMat J, RhsFn f,
|
|
191
|
+
void *f_data, realtype t, N_Vector y,
|
|
192
|
+
N_Vector fy, N_Vector ewt, realtype h,
|
|
193
|
+
realtype uround, void *jac_data,
|
|
194
|
+
long int *nfePtr, N_Vector vtemp1,
|
|
195
|
+
N_Vector vtemp2, N_Vector vtemp3);
|
|
196
|
+
|
|
197
|
+
|
|
198
|
+
/******************************************************************
|
|
199
|
+
* *
|
|
200
|
+
* Function : CVDense *
|
|
201
|
+
*----------------------------------------------------------------*
|
|
202
|
+
* A call to the CVDense function links the main CVODE integrator *
|
|
203
|
+
* with the CVDENSE linear solver. *
|
|
204
|
+
* *
|
|
205
|
+
* cvode_mem is the pointer to CVODE memory returned by *
|
|
206
|
+
* CVodeMalloc. *
|
|
207
|
+
* *
|
|
208
|
+
* djac is the dense Jacobian approximation routine to be used. *
|
|
209
|
+
* A user-supplied djac routine must be of type *
|
|
210
|
+
* CVDenseJacFn. Pass NULL for djac to use the default *
|
|
211
|
+
* difference quotient routine CVDenseDQJac supplied *
|
|
212
|
+
* with this solver. *
|
|
213
|
+
* *
|
|
214
|
+
* jac_data is a pointer to user data which is passed to the *
|
|
215
|
+
* djac routine every time it is called. *
|
|
216
|
+
* *
|
|
217
|
+
* The return values of CVDense are: *
|
|
218
|
+
* SUCCESS = 0 if successful *
|
|
219
|
+
* LMEM_FAIL = -1 if there was a memory allocation failure *
|
|
220
|
+
* *
|
|
221
|
+
* NOTE: The dense linear solver assumes a serial implementation *
|
|
222
|
+
* of the NVECTOR package. Therefore, CVDense will first *
|
|
223
|
+
* test for a compatible N_Vector internal representation *
|
|
224
|
+
* by checking (1) the machine environment ID tag and *
|
|
225
|
+
* (2) that the functions N_VMake, N_VDispose, N_VGetData, *
|
|
226
|
+
* and N_VSetData are implemented. *
|
|
227
|
+
* *
|
|
228
|
+
******************************************************************/
|
|
229
|
+
|
|
230
|
+
int CVDense(void *cvode_mem, CVDenseJacFn djac, void *jac_data);
|
|
231
|
+
|
|
232
|
+
|
|
233
|
+
/******************************************************************
|
|
234
|
+
* *
|
|
235
|
+
* Function : CVReInitDense *
|
|
236
|
+
*----------------------------------------------------------------*
|
|
237
|
+
* A call to the CVReInitDense function resets the link between *
|
|
238
|
+
* the main CVODE integrator and the CVDENSE linear solver. *
|
|
239
|
+
* After solving one problem using CVDENSE, call CVReInit and then*
|
|
240
|
+
* CVReInitDense to solve another problem of the same size, if *
|
|
241
|
+
* there is a change in the CVDense parameters djac or jac_data. *
|
|
242
|
+
* If there is no change in parameters, it is not necessary to *
|
|
243
|
+
* call either CVReInitDense or CVDense for the new problem. *
|
|
244
|
+
* *
|
|
245
|
+
* All arguments to CVReInitDense have the same names and meanings*
|
|
246
|
+
* as those of CVDense. The cvode_mem argument must be identical *
|
|
247
|
+
* to its value in the previous CVDense call. *
|
|
248
|
+
* *
|
|
249
|
+
* The return values of CVReInitDense are: *
|
|
250
|
+
* SUCCESS = 0 if successful, or *
|
|
251
|
+
* LMEM_FAIL = -1 if the cvode_mem argument is NULL *
|
|
252
|
+
* *
|
|
253
|
+
* NOTE: CVReInitDense performs the same compatibility tests as *
|
|
254
|
+
* CVDense. *
|
|
255
|
+
* *
|
|
256
|
+
******************************************************************/
|
|
257
|
+
|
|
258
|
+
int CVReInitDense(void *cvode_mem, CVDenseJacFn djac, void *jac_data);
|
|
259
|
+
|
|
260
|
+
|
|
261
|
+
#endif
|
|
262
|
+
/*
|
|
263
|
+
#ifdef __cplusplus
|
|
264
|
+
}
|
|
265
|
+
#endif
|
|
266
|
+
*/
|
|
267
|
+
#endif /* _INC_CVDENSE_H */
|