pyEQL 1.4.0rc9__cp310-cp310-win_amd64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- pyEQL/__init__.py +50 -0
- pyEQL/_phreeqc.cp310-win_amd64.pyd +0 -0
- pyEQL/activity_correction.py +879 -0
- pyEQL/database/geothermal.dat +5693 -0
- pyEQL/database/llnl.dat +19305 -0
- pyEQL/database/phreeqc_license.txt +54 -0
- pyEQL/database/pyeql_db.json +35607 -0
- pyEQL/engines.py +1153 -0
- pyEQL/equilibrium.py +227 -0
- pyEQL/functions.py +281 -0
- pyEQL/phreeqc/__init__.py +5 -0
- pyEQL/phreeqc/bindings.cpp +84 -0
- pyEQL/phreeqc/core.py +239 -0
- pyEQL/phreeqc/database/Amm.dat +1968 -0
- pyEQL/phreeqc/database/CMakeLists.txt +32 -0
- pyEQL/phreeqc/database/ColdChem.dat +267 -0
- pyEQL/phreeqc/database/Concrete_PHR.dat +158 -0
- pyEQL/phreeqc/database/Concrete_PZ.dat +195 -0
- pyEQL/phreeqc/database/Kinec.v2.dat +12039 -0
- pyEQL/phreeqc/database/Kinec_v3.dat +12159 -0
- pyEQL/phreeqc/database/Makefile.am +28 -0
- pyEQL/phreeqc/database/Makefile.in +530 -0
- pyEQL/phreeqc/database/PHREEQC_ThermoddemV1.10_15Dec2020.dat +12965 -0
- pyEQL/phreeqc/database/Tipping_Hurley.dat +4137 -0
- pyEQL/phreeqc/database/__init__.py +0 -0
- pyEQL/phreeqc/database/core10.dat +6824 -0
- pyEQL/phreeqc/database/frezchem.dat +634 -0
- pyEQL/phreeqc/database/iso.dat +7235 -0
- pyEQL/phreeqc/database/llnl.dat +19310 -0
- pyEQL/phreeqc/database/minteq.dat +5654 -0
- pyEQL/phreeqc/database/minteq.v4.dat +13212 -0
- pyEQL/phreeqc/database/phreeqc.dat +1972 -0
- pyEQL/phreeqc/database/phreeqc_rates.dat +3158 -0
- pyEQL/phreeqc/database/pitzer.dat +1044 -0
- pyEQL/phreeqc/database/sit.dat +14348 -0
- pyEQL/phreeqc/database/wateq4f.dat +4036 -0
- pyEQL/phreeqc/ext/README.md +10 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/CMakeLists.txt +476 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/INSTALL +302 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/IPhreeqc.rc +61 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/IPhreeqcConfig.cmake.in +4 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/Makefile.am +8 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/Makefile.in +816 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/aclocal.m4 +1217 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/ALL_BUILD.vcxproj +185 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/ALL_BUILD.vcxproj.filters +8 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/CMakeFiles/generate.stamp +1 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/CMakeFiles/generate.stamp.depend +79 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/CTestTestfile.cmake +6 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/Continuous.vcxproj +240 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/Continuous.vcxproj.filters +17 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/DartConfiguration.tcl +109 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/Experimental.vcxproj +240 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/Experimental.vcxproj.filters +17 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/INSTALL.vcxproj +209 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/INSTALL.vcxproj.filters +13 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/CSelectedOutput.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Dictionary.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/ExchComp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Exchange.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/GasComp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/GasPhase.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.lib.recipe +11 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/CL.command.1.tlog +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/CL.read.1.tlog +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/CL.write.1.tlog +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/Cl.items.tlog +82 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/CustomBuild.command.1.tlog +10 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/CustomBuild.read.1.tlog +78 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/CustomBuild.write.1.tlog +2 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/IPhreeqc.lastbuildstate +2 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/Lib-link.read.1.tlog +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/Lib-link.write.1.tlog +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/Lib.command.1.tlog +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqcLib.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc_interface_F.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/ISolution.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/ISolutionComp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Keywords.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/KineticsComp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/NameDouble.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/NumKeyword.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/PBasic.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/PHRQ_base.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/PHRQ_io.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/PHRQ_io_output.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/PPassemblage.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/PPassemblageComp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Parser.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Phreeqc.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Pressure.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Reaction.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/ReadClass.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SS.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SSassemblage.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SScomp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SelectedOutput.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Serializer.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Solution.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SolutionIsotope.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/StorageBin.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/StorageBinList.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Surface.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SurfaceCharge.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SurfaceComp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/System.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Temperature.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Use.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/UserPunch.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Utils.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Var.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/advection.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/basicsubs.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/cl1.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/cvdense.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/cvode.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/cxxKinetics.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/cxxMix.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/dense.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/dumper.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/gases.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/input.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/integrate.obj +0 -0
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- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/isotopes.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/kinetics.obj +0 -0
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- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/model.obj +0 -0
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- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/pitzer.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/pitzer_structures.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/prep.obj +0 -0
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- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/config/ar-lib +270 -0
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- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/StorageBin.h +141 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/StorageBinList.cpp +358 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/StorageBinList.h +81 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Surface.cxx +837 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Surface.h +108 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SurfaceCharge.cxx +617 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SurfaceCharge.h +137 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SurfaceComp.cxx +509 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SurfaceComp.h +70 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/System.cxx +103 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/System.h +89 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Temperature.cxx +423 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Temperature.h +42 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Use.cpp +78 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Use.h +159 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/UserPunch.cpp +32 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/UserPunch.h +39 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/ZedGraph.dll +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/advection.cpp +140 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/basicsubs.cpp +4333 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cl1.cpp +881 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/PHRQ_base.cxx +117 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/PHRQ_base.h +48 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/PHRQ_exports.h +20 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/PHRQ_io.cpp +914 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/PHRQ_io.h +207 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/Parser.cxx +1331 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/Parser.h +310 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/Utils.cxx +263 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/Utils.h +29 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/phrqtype.h +18 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cvdense.cpp +566 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cvdense.h +267 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cvode.cpp +3939 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cvode.h +940 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cxxKinetics.cxx +617 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cxxKinetics.h +78 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cxxMix.cxx +154 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cxxMix.h +58 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/dense.cpp +175 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/dense.h +341 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/dumper.cpp +277 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/dumper.h +60 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/gases.cpp +748 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/global_structures.h +1672 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/input.cpp +133 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/integrate.cpp +1219 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/inverse.cpp +5135 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/isotopes.cpp +1813 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/kinetics.cpp +3180 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/mainsubs.cpp +2320 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/model.cpp +5843 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/nvector.cpp +272 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/nvector.h +485 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/nvector_serial.cpp +1032 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/nvector_serial.h +369 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/parse.cpp +1044 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/phqalloc.cpp +316 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/phqalloc.h +47 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/pitzer.cpp +2709 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/pitzer_structures.cpp +225 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/prep.cpp +6267 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/print.cpp +3673 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/read.cpp +10245 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/readtr.cpp +1495 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/runner.cpp +158 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/runner.h +33 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/sit.cpp +1684 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/smalldense.cpp +324 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/smalldense.h +261 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/spread.cpp +1309 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/step.cpp +1566 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/structures.cpp +3381 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/sundialsmath.cpp +133 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/sundialsmath.h +162 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/sundialstypes.h +183 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/tally.cpp +1288 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/tidy.cpp +5600 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/transport.cpp +6403 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/utilities.cpp +1339 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/thread.h +64 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/CMakeLists.txt +133 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/Makefile.am +45 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/Makefile.in +1128 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/ex2.in +26 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/main.f90 +31 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/main77.f +6 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/main_fortran.cxx +8 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/phreeqc.dat.in +1556 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/test_c.c +148 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/test_cxx.cxx +152 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/test_f90.F90 +328 -0
- pyEQL/phreeqc/iphreeqc_wrapper.cpp +75 -0
- pyEQL/phreeqc/solution.py +74 -0
- pyEQL/phreeqc/var.py +50 -0
- pyEQL/presets/Ringers lactate.yaml +20 -0
- pyEQL/presets/__init__.py +17 -0
- pyEQL/presets/normal saline.yaml +17 -0
- pyEQL/presets/rainwater.yaml +17 -0
- pyEQL/presets/seawater.yaml +29 -0
- pyEQL/presets/urine.yaml +26 -0
- pyEQL/presets/wastewater.yaml +21 -0
- pyEQL/py.typed +0 -0
- pyEQL/salt_ion_match.py +112 -0
- pyEQL/solute.py +163 -0
- pyEQL/solution.py +2714 -0
- pyEQL/utils.py +237 -0
- pyeql-1.4.0rc9.dist-info/METADATA +130 -0
- pyeql-1.4.0rc9.dist-info/RECORD +519 -0
- pyeql-1.4.0rc9.dist-info/WHEEL +5 -0
- pyeql-1.4.0rc9.dist-info/licenses/AUTHORS.md +21 -0
- pyeql-1.4.0rc9.dist-info/licenses/LICENSE.txt +20 -0
|
@@ -0,0 +1,3673 @@
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//Note to encode in ANSI with NP++
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#include "Utils.h"
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#include "Phreeqc.h"
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#include "phqalloc.h"
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#include <stdarg.h>
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#include <assert.h>
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#include "Temperature.h"
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#include "cxxMix.h"
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#include "Exchange.h"
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#include "GasPhase.h"
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#include "Reaction.h"
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#include "PPassemblage.h"
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#include "SSassemblage.h"
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#include "cxxKinetics.h"
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#include "Solution.h"
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#include "Surface.h"
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#if defined(_MSC_VER) && (_MSC_VER <= 1400) // VS2005
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# define nullptr NULL
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#endif
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#if __cplusplus < 201103L // Check if C++ standard is pre-C++11
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# ifndef nullptr
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# define nullptr NULL
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# endif
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#endif
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#if defined(PHREEQCI_GUI)
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#ifdef _DEBUG
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#define new DEBUG_NEW
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#undef THIS_FILE
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static char THIS_FILE[] = __FILE__;
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#endif
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#endif
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/* ---------------------------------------------------------------------- */
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int Phreeqc::
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array_print(LDBLE * array_l, int row_count, int column_count,
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int l_max_column_count)
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/* ---------------------------------------------------------------------- */
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{
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int i, j, k;
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for (i = 0; i < row_count; i++)
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{
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k = 0;
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output_msg(sformatf("%d\n", i));
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for (j = 0; j < column_count; j++)
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{
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if (k > 7)
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{
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output_msg(sformatf("\n"));
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k = 0;
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}
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output_msg(sformatf("%11.2e",
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(double) array_l[i * l_max_column_count + j]));
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k++;
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}
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if (k != 0)
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{
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output_msg(sformatf("\n"));
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}
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output_msg(sformatf("\n"));
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}
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output_msg(sformatf("\n"));
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return (OK);
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}
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/* ---------------------------------------------------------------------- */
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int Phreeqc::
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set_pr_in_false(void)
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/* ---------------------------------------------------------------------- */
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{
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// set pr_in to false for subsequent steps...
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if (use.Get_pp_assemblage_in())
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{
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for (int i = 0; i < count_unknowns; i++)
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{
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if (x[i]->type == PP)
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x[i]->phase->pr_in = false;
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}
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}
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if (use.Get_gas_phase_ptr())
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{
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cxxGasPhase *gas_phase_ptr = use.Get_gas_phase_ptr();
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for (size_t i = 0; i < gas_phase_ptr->Get_gas_comps().size(); i++)
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{
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cxxGasComp *gc_ptr = &(gas_phase_ptr->Get_gas_comps()[i]);
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int k;
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90
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class phase *phase_ptr = phase_bsearch(gc_ptr->Get_phase_name().c_str(), &k, FALSE);
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if (phase_ptr)
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phase_ptr->pr_in = false;
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}
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}
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return (OK);
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}
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97
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/* ---------------------------------------------------------------------- */
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98
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int Phreeqc::
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print_all(void)
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/* ---------------------------------------------------------------------- */
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{
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102
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/*
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* Print each block of results in sequence to file output
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* also print selected output to punch_file
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* Each routine is controlled by a variable in structure print.
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* print.all == FALSE will turn off all prints.
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*/
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108
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if (pr.all == FALSE)
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{
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set_pr_in_false();
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return (OK);
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}
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/*
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* Makes sorted list including all species for each valence state
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*/
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if (pr.surface == TRUE || pr.exchange == TRUE || pr.species == TRUE)
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{
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species_list_sort();
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119
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}
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120
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/*
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121
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* Print results
|
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122
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*/
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123
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s_h2o->lm = s_h2o->la;
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print_using();
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125
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print_mix();
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126
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print_reaction();
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127
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print_kinetics();
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128
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print_user_print();
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129
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print_gas_phase();
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130
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print_pp_assemblage();
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131
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print_ss_assemblage();
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132
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print_surface();
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133
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print_exchange();
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134
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print_initial_solution_isotopes();
|
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135
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print_isotope_ratios();
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136
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print_isotope_alphas();
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137
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print_totals();
|
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138
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+
print_eh();
|
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139
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print_species();
|
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140
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+
print_alkalinity();
|
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141
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+
print_saturation_indices();
|
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142
|
+
if (!pr.saturation_indices)
|
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143
|
+
set_pr_in_false();
|
|
144
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return (OK);
|
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145
|
+
}
|
|
146
|
+
|
|
147
|
+
/* ---------------------------------------------------------------------- */
|
|
148
|
+
int Phreeqc::
|
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149
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+
punch_all(void)
|
|
150
|
+
/* ---------------------------------------------------------------------- */
|
|
151
|
+
{
|
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152
|
+
//#ifndef PHREEQ98 /* if not PHREEQ98 use the standard declaration */
|
|
153
|
+
// if (pr.hdf == FALSE && (punch.in == FALSE || pr.punch == FALSE) && user_graph->commands == NULL)
|
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154
|
+
// return (OK);
|
|
155
|
+
///*
|
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156
|
+
// * Punch results
|
|
157
|
+
// */
|
|
158
|
+
// if (state == TRANSPORT || state == PHAST || state == ADVECTION)
|
|
159
|
+
// {
|
|
160
|
+
// use.Get_kinetics_ptr() = kinetics_bsearch(use.Get_n_kinetics_user(), &i);
|
|
161
|
+
// }
|
|
162
|
+
// else if (use.Get_kinetics_in() != FALSE)
|
|
163
|
+
// {
|
|
164
|
+
// use.Get_kinetics_ptr() = kinetics_bsearch(-2, &i);
|
|
165
|
+
// }
|
|
166
|
+
//#else /* if PHREEQ98 execute punch_user_graph first, that is, before punch.in and pr.punch is checked */
|
|
167
|
+
if (state == TRANSPORT || state == PHAST || state == ADVECTION)
|
|
168
|
+
{
|
|
169
|
+
use.Set_kinetics_ptr(Utilities::Rxn_find(Rxn_kinetics_map, use.Get_n_kinetics_user()));
|
|
170
|
+
}
|
|
171
|
+
else if (use.Get_kinetics_in() != FALSE)
|
|
172
|
+
{
|
|
173
|
+
use.Set_kinetics_ptr(Utilities::Rxn_find(Rxn_kinetics_map, -2));
|
|
174
|
+
}
|
|
175
|
+
#if defined PHREEQ98
|
|
176
|
+
if (pr.user_graph == TRUE)
|
|
177
|
+
{
|
|
178
|
+
punch_user_graph();
|
|
179
|
+
}
|
|
180
|
+
#elif defined MULTICHART
|
|
181
|
+
if (pr.user_graph == TRUE)
|
|
182
|
+
{
|
|
183
|
+
chart_handler.Punch_user_graph(this);
|
|
184
|
+
}
|
|
185
|
+
#endif
|
|
186
|
+
//if (pr.hdf == FALSE && (punch.in == FALSE || pr.punch == FALSE))
|
|
187
|
+
if (pr.hdf == FALSE && (SelectedOutput_map.size() == 0 || pr.punch == FALSE))
|
|
188
|
+
return (OK);
|
|
189
|
+
std::map < int, SelectedOutput >::iterator so_it = SelectedOutput_map.begin();
|
|
190
|
+
for ( ; so_it != SelectedOutput_map.end(); so_it++)
|
|
191
|
+
{
|
|
192
|
+
current_selected_output = &(so_it->second);
|
|
193
|
+
if (pr.punch == FALSE ||
|
|
194
|
+
current_selected_output == NULL ||
|
|
195
|
+
!current_selected_output->Get_active() /* ||
|
|
196
|
+
current_selected_output->Get_punch_ostream() == NULL*/)
|
|
197
|
+
continue;
|
|
198
|
+
phrq_io->Set_punch_ostream(current_selected_output->Get_punch_ostream());
|
|
199
|
+
|
|
200
|
+
// UserPunch
|
|
201
|
+
std::map < int, UserPunch >::iterator up_it = UserPunch_map.find(current_selected_output->Get_n_user());
|
|
202
|
+
current_user_punch = up_it == UserPunch_map.end() ? NULL : &(up_it->second);
|
|
203
|
+
punch_identifiers();
|
|
204
|
+
punch_totals();
|
|
205
|
+
punch_molalities();
|
|
206
|
+
punch_activities();
|
|
207
|
+
punch_pp_assemblage();
|
|
208
|
+
punch_saturation_indices();
|
|
209
|
+
punch_gas_phase();
|
|
210
|
+
punch_kinetics();
|
|
211
|
+
punch_ss_assemblage();
|
|
212
|
+
punch_isotopes();
|
|
213
|
+
punch_calculate_values();
|
|
214
|
+
punch_user_punch();
|
|
215
|
+
/*
|
|
216
|
+
* new line for punch_file
|
|
217
|
+
*/
|
|
218
|
+
if (current_selected_output->Get_new_line() && this->Get_output_newline())
|
|
219
|
+
punch_msg("\n");
|
|
220
|
+
this->Set_output_newline(true);
|
|
221
|
+
|
|
222
|
+
/*
|
|
223
|
+
* signal end of row
|
|
224
|
+
*/
|
|
225
|
+
fpunchf_end_row("\n");
|
|
226
|
+
punch_flush();
|
|
227
|
+
}
|
|
228
|
+
current_selected_output = NULL;
|
|
229
|
+
current_user_punch = NULL;
|
|
230
|
+
phrq_io->Set_punch_ostream(NULL);
|
|
231
|
+
return (OK);
|
|
232
|
+
}
|
|
233
|
+
/* ---------------------------------------------------------------------- */
|
|
234
|
+
int Phreeqc::
|
|
235
|
+
print_diffuse_layer(cxxSurfaceCharge *charge_ptr)
|
|
236
|
+
/* ---------------------------------------------------------------------- */
|
|
237
|
+
{
|
|
238
|
+
/*
|
|
239
|
+
* Prints total moles of each element in diffuse layer
|
|
240
|
+
* Remove comment to print total moles of each species
|
|
241
|
+
*/
|
|
242
|
+
LDBLE mass_water_surface, r, sum_surfs;
|
|
243
|
+
LDBLE molality, moles_excess, moles_surface, d;
|
|
244
|
+
|
|
245
|
+
if (use.Get_surface_ptr() == NULL)
|
|
246
|
+
return (OK);
|
|
247
|
+
/*
|
|
248
|
+
* Find position of component in surface charge data
|
|
249
|
+
*/
|
|
250
|
+
int j;
|
|
251
|
+
for (j = 0; j < count_unknowns; j++)
|
|
252
|
+
{
|
|
253
|
+
if (x[j]->type != SURFACE_CB)
|
|
254
|
+
continue;
|
|
255
|
+
cxxSurfaceCharge * charge_ptr_search = use.Get_surface_ptr()->Find_charge(x[j]->surface_charge);
|
|
256
|
+
if (charge_ptr->Get_name() == charge_ptr_search->Get_name())
|
|
257
|
+
{
|
|
258
|
+
break;
|
|
259
|
+
}
|
|
260
|
+
}
|
|
261
|
+
if (j >= count_unknowns)
|
|
262
|
+
{
|
|
263
|
+
error_string = sformatf(
|
|
264
|
+
"In print_diffuse_layer: component not found, %s.",
|
|
265
|
+
charge_ptr->Get_name().c_str());
|
|
266
|
+
error_msg(error_string, STOP);
|
|
267
|
+
}
|
|
268
|
+
/*
|
|
269
|
+
* Loop through all surface components, calculate each H2O surface (diffuse layer),
|
|
270
|
+
* H2O aq, and H2O bulk (diffuse layers plus aqueous).
|
|
271
|
+
*/
|
|
272
|
+
|
|
273
|
+
if (mass_water_surfaces_x != 0)
|
|
274
|
+
{
|
|
275
|
+
d = 100 * charge_ptr->Get_mass_water() / mass_water_surfaces_x;
|
|
276
|
+
}
|
|
277
|
+
else
|
|
278
|
+
{
|
|
279
|
+
d = 0.0;
|
|
280
|
+
}
|
|
281
|
+
output_msg(sformatf(
|
|
282
|
+
"\tWater in diffuse layer: %8.3e kg, %4.1f%% of total DDL-water.\n",
|
|
283
|
+
(double) charge_ptr->Get_mass_water(), (double) d));
|
|
284
|
+
if (print_viscosity && d > 0)
|
|
285
|
+
{
|
|
286
|
+
cxxSurface * surf_ptr = use.Get_surface_ptr();
|
|
287
|
+
if (surf_ptr->Get_calc_viscosity())
|
|
288
|
+
{
|
|
289
|
+
viscosity(surf_ptr);
|
|
290
|
+
viscosity(nullptr);
|
|
291
|
+
if (d == 100)
|
|
292
|
+
output_msg(sformatf(
|
|
293
|
+
"\t\t calculated viscosity: %7.5f mPa s.\n", (double)charge_ptr->Get_DDL_viscosity()));
|
|
294
|
+
else
|
|
295
|
+
output_msg(sformatf(
|
|
296
|
+
"\t\t calculated viscosity: %7.5f mPa s for this DDL water. (%7.5f mPa s for total DDL-water.)\n", (double)charge_ptr->Get_DDL_viscosity(), (double)use.Get_surface_ptr()->Get_DDL_viscosity()));
|
|
297
|
+
}
|
|
298
|
+
else
|
|
299
|
+
output_msg(sformatf(
|
|
300
|
+
"\t\t viscosity: %7.5f mPa s for DDL water.\n", (double)charge_ptr->Get_DDL_viscosity() * viscos));
|
|
301
|
+
}
|
|
302
|
+
|
|
303
|
+
if (use.Get_surface_ptr()->Get_debye_lengths() > 0 && d > 0)
|
|
304
|
+
{
|
|
305
|
+
sum_surfs = 0.0;
|
|
306
|
+
for (j = 0; j < count_unknowns; j++)
|
|
307
|
+
{
|
|
308
|
+
if (x[j]->type != SURFACE_CB)
|
|
309
|
+
continue;
|
|
310
|
+
cxxSurfaceCharge * charge_ptr_search = use.Get_surface_ptr()->Find_charge(x[j]->surface_charge);
|
|
311
|
+
sum_surfs +=
|
|
312
|
+
charge_ptr_search->Get_specific_area() * charge_ptr_search->Get_grams();
|
|
313
|
+
}
|
|
314
|
+
r = 0.002 * mass_water_bulk_x / sum_surfs;
|
|
315
|
+
output_msg(sformatf(
|
|
316
|
+
"\tRadius of total pore: %8.3e m; of free pore: %8.3e m.\n",
|
|
317
|
+
(double) r, (double) (r - use.Get_surface_ptr()->Get_thickness())));
|
|
318
|
+
}
|
|
319
|
+
|
|
320
|
+
if (debug_diffuse_layer == TRUE)
|
|
321
|
+
{
|
|
322
|
+
output_msg(sformatf(
|
|
323
|
+
"\n\t\tDistribution of species in diffuse layer\n\n"));
|
|
324
|
+
output_msg(sformatf(
|
|
325
|
+
"\n\tSpecies \t Moles \tMoles excess\t g\n"));
|
|
326
|
+
}
|
|
327
|
+
if ((mass_water_surface = charge_ptr->Get_mass_water()))
|
|
328
|
+
{
|
|
329
|
+
count_elts = 0;
|
|
330
|
+
paren_count = 0;
|
|
331
|
+
for (j = 0; j < (int)this->s_x.size(); j++)
|
|
332
|
+
{
|
|
333
|
+
if (s_x[j]->type > HPLUS)
|
|
334
|
+
continue;
|
|
335
|
+
molality = under(s_x[j]->lm);
|
|
336
|
+
moles_excess = mass_water_aq_x * molality * (charge_ptr->Get_g_map()[s_x[j]->z].Get_g() * s_x[j]->erm_ddl +
|
|
337
|
+
mass_water_surface / mass_water_aq_x * (s_x[j]->erm_ddl - 1));
|
|
338
|
+
moles_surface = mass_water_surface * molality + moles_excess;
|
|
339
|
+
if (debug_diffuse_layer == TRUE)
|
|
340
|
+
{
|
|
341
|
+
output_msg(sformatf("\t%-12s\t%12.3e\t%12.3e\t%12.3e\n",
|
|
342
|
+
s_x[j]->name, moles_surface, moles_excess,
|
|
343
|
+
charge_ptr->Get_g_map()[s_x[j]->z].Get_g()));
|
|
344
|
+
}
|
|
345
|
+
/*
|
|
346
|
+
* Accumulate elements in diffuse layer
|
|
347
|
+
*/
|
|
348
|
+
add_elt_list(s_x[j]->next_elt, moles_surface);
|
|
349
|
+
}
|
|
350
|
+
/*
|
|
351
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, s_h2o->name);
|
|
352
|
+
ptr = &(token[0]);
|
|
353
|
+
get_elts_in_species (&ptr, mass_water_surface / gfw_water);
|
|
354
|
+
*/
|
|
355
|
+
elt_list_combine();
|
|
356
|
+
/*
|
|
357
|
+
* Print totals
|
|
358
|
+
*/
|
|
359
|
+
if (use.Get_surface_ptr()->Get_dl_type() != cxxSurface::DONNAN_DL)
|
|
360
|
+
{
|
|
361
|
+
output_msg(sformatf(
|
|
362
|
+
"\n\tTotal moles in diffuse layer (excluding water)\n\n"));
|
|
363
|
+
}
|
|
364
|
+
else
|
|
365
|
+
{
|
|
366
|
+
LDBLE exp_g = charge_ptr->Get_g_map()[1].Get_g() * mass_water_aq_x / ((1 - charge_ptr->Get_f_free()) * mass_water_surface) + 1;
|
|
367
|
+
LDBLE psi_DL = -log(exp_g) * R_KJ_DEG_MOL * tk_x / F_KJ_V_EQ;
|
|
368
|
+
if (use.Get_surface_ptr()->Get_correct_D())
|
|
369
|
+
{
|
|
370
|
+
output_msg(sformatf(
|
|
371
|
+
"\n\tTotal moles in diffuse layer (excluding water), Donnan corrected to match Poisson-Boltzmann."));
|
|
372
|
+
output_msg(sformatf(
|
|
373
|
+
"\n\tDonnan Layer potential, psi_DL = %10.3e V, for (1 - f_free) of DL water = %10.3e kg (f_free = %5.3f).\n\tBoltzmann factor, exp(-psi_DL * z * z_corr * F / RT) = %9.3e (= c_DL / c_free if z is +1)",
|
|
374
|
+
psi_DL, (1 - charge_ptr->Get_f_free()) * mass_water_surface, charge_ptr->Get_f_free(), exp_g));
|
|
375
|
+
output_msg(sformatf(
|
|
376
|
+
"\n\t\tThus: Moles of Na+ = (c_DL * (1 - f_free) + f_free) * c_free * kg DDL-water\n\n"));
|
|
377
|
+
}
|
|
378
|
+
else
|
|
379
|
+
{
|
|
380
|
+
output_msg(sformatf(
|
|
381
|
+
"\n\tTotal moles in diffuse layer (excluding water), Donnan calculation."));
|
|
382
|
+
output_msg(sformatf(
|
|
383
|
+
"\n\tDonnan Layer potential, psi_DL = %10.3e V.\n\tBoltzmann factor, exp(-psi_DL * F / RT) = %9.3e (= c_DL / c_free if z is +1).\n\n",
|
|
384
|
+
psi_DL, exp_g));
|
|
385
|
+
}
|
|
386
|
+
}
|
|
387
|
+
output_msg(sformatf("\tElement \t Moles\n"));
|
|
388
|
+
for (j = 0; j < count_elts; j++)
|
|
389
|
+
{
|
|
390
|
+
output_msg(sformatf("\t%-14s\t%12.4e\n",
|
|
391
|
+
elt_list[j].elt->name, (double)elt_list[j].coef));
|
|
392
|
+
}
|
|
393
|
+
}
|
|
394
|
+
return (OK);
|
|
395
|
+
}
|
|
396
|
+
|
|
397
|
+
/* ---------------------------------------------------------------------- */
|
|
398
|
+
int Phreeqc::
|
|
399
|
+
print_eh(void)
|
|
400
|
+
/* ---------------------------------------------------------------------- */
|
|
401
|
+
{
|
|
402
|
+
/*
|
|
403
|
+
* Prints eh calculated from redox couples
|
|
404
|
+
* Only calculates eh if two redox states of an element have mass balance
|
|
405
|
+
* equations.
|
|
406
|
+
*/
|
|
407
|
+
int i, j, k, first;
|
|
408
|
+
LDBLE pe, eh;
|
|
409
|
+
class master *master_ptr0, *master_ptr1;
|
|
410
|
+
char token[MAX_LENGTH];
|
|
411
|
+
|
|
412
|
+
if (pr.eh == FALSE || pr.all == FALSE)
|
|
413
|
+
return (OK);
|
|
414
|
+
|
|
415
|
+
tk_x = tc_x + 273.15;
|
|
416
|
+
|
|
417
|
+
first = TRUE;
|
|
418
|
+
for (i = 0; i < (int)master.size(); i++)
|
|
419
|
+
{
|
|
420
|
+
if (master[i]->in != TRUE)
|
|
421
|
+
continue;
|
|
422
|
+
if (master[i]->primary == TRUE)
|
|
423
|
+
continue;
|
|
424
|
+
/*
|
|
425
|
+
* Secondary master species has mass balance equation
|
|
426
|
+
*/
|
|
427
|
+
master_ptr0 = master[i]->elt->primary;
|
|
428
|
+
for (k = i + 1; k < (int)master.size(); k++)
|
|
429
|
+
{
|
|
430
|
+
if (master[k]->in != TRUE)
|
|
431
|
+
continue;
|
|
432
|
+
master_ptr1 = master[k]->elt->primary;
|
|
433
|
+
if (master_ptr1 != master_ptr0)
|
|
434
|
+
break;
|
|
435
|
+
/*
|
|
436
|
+
* Another secondary master species of same element has mass balance equation
|
|
437
|
+
* Rewrite equations to calculate pe
|
|
438
|
+
*/
|
|
439
|
+
rewrite_master_to_secondary(master[k], master[i]);
|
|
440
|
+
trxn_swap("e-");
|
|
441
|
+
/* debug
|
|
442
|
+
trxn_print();
|
|
443
|
+
*/
|
|
444
|
+
/*
|
|
445
|
+
* Calculate pe, eh
|
|
446
|
+
*/
|
|
447
|
+
pe = -k_calc(trxn.logk, tk_x, patm_x * PASCAL_PER_ATM);
|
|
448
|
+
for (j = 1; j < count_trxn; j++)
|
|
449
|
+
{
|
|
450
|
+
pe -= trxn.token[j].s->la * trxn.token[j].coef;
|
|
451
|
+
}
|
|
452
|
+
eh = ((LOG_10 * R_KJ_DEG_MOL * tk_x) / F_KJ_V_EQ) * pe;
|
|
453
|
+
/*
|
|
454
|
+
* Print heading
|
|
455
|
+
*/
|
|
456
|
+
if (first == TRUE)
|
|
457
|
+
{
|
|
458
|
+
print_centered("Redox couples");
|
|
459
|
+
output_msg(sformatf("\t%-15s%12s%12s\n\n",
|
|
460
|
+
"Redox couple", "pe", "Eh (volts)"));
|
|
461
|
+
first = FALSE;
|
|
462
|
+
}
|
|
463
|
+
/*
|
|
464
|
+
* Print result
|
|
465
|
+
*/
|
|
466
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, master[i]->elt->name);
|
|
467
|
+
Utilities::strcat_safe(token, MAX_LENGTH, "/");
|
|
468
|
+
Utilities::strcat_safe(token, MAX_LENGTH, master[k]->elt->name);
|
|
469
|
+
output_msg(sformatf("\t%-15s%12.4f%12.4f\n", token,
|
|
470
|
+
(double) pe, (double) eh));
|
|
471
|
+
}
|
|
472
|
+
}
|
|
473
|
+
if (first == FALSE)
|
|
474
|
+
output_msg(sformatf("\n"));
|
|
475
|
+
return (OK);
|
|
476
|
+
}
|
|
477
|
+
/* ---------------------------------------------------------------------- */
|
|
478
|
+
int Phreeqc::
|
|
479
|
+
print_exchange(void)
|
|
480
|
+
/* ---------------------------------------------------------------------- */
|
|
481
|
+
{
|
|
482
|
+
/*
|
|
483
|
+
* Print moles of each exchange species
|
|
484
|
+
*/
|
|
485
|
+
int i;
|
|
486
|
+
cxxExchange * exchange_ptr;
|
|
487
|
+
const char *name, *name1;
|
|
488
|
+
class master *master_ptr;
|
|
489
|
+
LDBLE dum, dum2;
|
|
490
|
+
/*
|
|
491
|
+
* Print exchange data
|
|
492
|
+
*/
|
|
493
|
+
exchange_ptr = use.Get_exchange_ptr();
|
|
494
|
+
if (exchange_ptr == NULL || pr.exchange == FALSE || pr.all == FALSE)
|
|
495
|
+
return (OK);
|
|
496
|
+
|
|
497
|
+
if (state >= REACTION)
|
|
498
|
+
{
|
|
499
|
+
print_centered("Exchange composition");
|
|
500
|
+
}
|
|
501
|
+
/*
|
|
502
|
+
* Print list of species
|
|
503
|
+
*/
|
|
504
|
+
|
|
505
|
+
s_h2o->lm = s_h2o->la;
|
|
506
|
+
name = s_hplus->secondary->elt->name;
|
|
507
|
+
for (i = 0; i < (int)species_list.size(); i++)
|
|
508
|
+
{
|
|
509
|
+
/*
|
|
510
|
+
* Get name of master species
|
|
511
|
+
*/
|
|
512
|
+
if (species_list[i].s->type != EX)
|
|
513
|
+
continue;
|
|
514
|
+
if (species_list[i].master_s->secondary != NULL)
|
|
515
|
+
{
|
|
516
|
+
master_ptr = species_list[i].master_s->secondary;
|
|
517
|
+
name1 = species_list[i].master_s->secondary->elt->name;
|
|
518
|
+
}
|
|
519
|
+
else
|
|
520
|
+
{
|
|
521
|
+
master_ptr = species_list[i].master_s->primary;
|
|
522
|
+
name1 = species_list[i].master_s->primary->elt->name;
|
|
523
|
+
}
|
|
524
|
+
/*
|
|
525
|
+
* Check if new master species, print total molality
|
|
526
|
+
*/
|
|
527
|
+
if (name1 != name)
|
|
528
|
+
{
|
|
529
|
+
name = name1;
|
|
530
|
+
output_msg(sformatf("%-14s%12.3e mol", name,
|
|
531
|
+
(double) master_ptr->unknown->moles));
|
|
532
|
+
cxxExchange *exchange_ptr = (cxxExchange *) (use.Get_exchange_ptr());
|
|
533
|
+
if (master_ptr->unknown->exch_comp == NULL)
|
|
534
|
+
{
|
|
535
|
+
error_string = sformatf("Exchange unknown has no exchange component for exchanger %s."
|
|
536
|
+
"\nIs the same name used for a SURFACE and an EXCHANGER?",
|
|
537
|
+
master_ptr->unknown->description);
|
|
538
|
+
error_msg(error_string, STOP);
|
|
539
|
+
}
|
|
540
|
+
const cxxExchComp *exchange_comp_ptr = exchange_ptr->Find_comp(master_ptr->unknown->exch_comp);
|
|
541
|
+
assert(exchange_comp_ptr);
|
|
542
|
+
if (exchange_comp_ptr->Get_phase_name().size() > 0)
|
|
543
|
+
{
|
|
544
|
+
output_msg(sformatf("\t[%g (mol %s)/(mol %s)]",
|
|
545
|
+
(double) exchange_comp_ptr->Get_phase_proportion(),
|
|
546
|
+
exchange_comp_ptr->Get_formula().c_str(),
|
|
547
|
+
exchange_comp_ptr->Get_phase_name().c_str()));
|
|
548
|
+
}
|
|
549
|
+
else if (exchange_comp_ptr->Get_rate_name().size() > 0)
|
|
550
|
+
{
|
|
551
|
+
output_msg(sformatf(
|
|
552
|
+
"\t[%g (mol %s)/(mol kinetic reactant %s)]",
|
|
553
|
+
(double) exchange_comp_ptr->Get_phase_proportion(),
|
|
554
|
+
exchange_comp_ptr->Get_formula().c_str(),
|
|
555
|
+
exchange_comp_ptr->Get_rate_name().c_str()));
|
|
556
|
+
}
|
|
557
|
+
output_msg(sformatf("\n\n"));
|
|
558
|
+
/* Heading for species */
|
|
559
|
+
output_msg(sformatf("\t%-15s%12s%12s%12s%10s\n", " ", " ",
|
|
560
|
+
"Equiv- ", "Equivalent", "Log "));
|
|
561
|
+
output_msg(sformatf("\t%-15s%12s%12s%12s%10s\n\n",
|
|
562
|
+
"Species", "Moles ", "alents ", "Fraction", "Gamma"));
|
|
563
|
+
}
|
|
564
|
+
/*
|
|
565
|
+
* Print species data
|
|
566
|
+
*/
|
|
567
|
+
if (master_ptr->total > 1.0e-16)
|
|
568
|
+
{
|
|
569
|
+
if (species_list[i].s->equiv != 0.0)
|
|
570
|
+
{
|
|
571
|
+
dum = fabs(species_list[i].s->equiv) / master_ptr->total;
|
|
572
|
+
}
|
|
573
|
+
else
|
|
574
|
+
{
|
|
575
|
+
if (species_list[i].master_s->z == 0)
|
|
576
|
+
{
|
|
577
|
+
dum = 1 / master_ptr->total;
|
|
578
|
+
}
|
|
579
|
+
else
|
|
580
|
+
{
|
|
581
|
+
dum = 1;
|
|
582
|
+
}
|
|
583
|
+
}
|
|
584
|
+
if (species_list[i].master_s->z != 0.0)
|
|
585
|
+
{
|
|
586
|
+
dum2 = fabs(species_list[i].master_s->z);
|
|
587
|
+
}
|
|
588
|
+
else
|
|
589
|
+
{
|
|
590
|
+
dum2 = 1;
|
|
591
|
+
}
|
|
592
|
+
output_msg(sformatf("\t%-15s%12.3e%12.3e%12.3e%10.3f\n",
|
|
593
|
+
species_list[i].s->name,
|
|
594
|
+
(double) species_list[i].s->moles,
|
|
595
|
+
(double) (species_list[i].s->moles * dum2 *
|
|
596
|
+
species_list[i].s->equiv),
|
|
597
|
+
(double) (species_list[i].s->moles *
|
|
598
|
+
dum /* / dum2 */ ),
|
|
599
|
+
(double) (species_list[i].s->lg - log10(dum))));
|
|
600
|
+
}
|
|
601
|
+
}
|
|
602
|
+
output_msg(sformatf("\n"));
|
|
603
|
+
return (OK);
|
|
604
|
+
}
|
|
605
|
+
/* ---------------------------------------------------------------------- */
|
|
606
|
+
int Phreeqc::
|
|
607
|
+
print_gas_phase(void)
|
|
608
|
+
/* ---------------------------------------------------------------------- */
|
|
609
|
+
{
|
|
610
|
+
/*
|
|
611
|
+
* Prints gas phase composition if present
|
|
612
|
+
*/
|
|
613
|
+
LDBLE lp, moles, initial_moles, delta_moles;
|
|
614
|
+
class rxn_token *rxn_ptr;
|
|
615
|
+
char info[MAX_LENGTH];
|
|
616
|
+
bool PR = false;
|
|
617
|
+
|
|
618
|
+
if (pr.gas_phase == FALSE || pr.all == FALSE)
|
|
619
|
+
return (OK);
|
|
620
|
+
if (use.Get_gas_phase_ptr() == NULL)
|
|
621
|
+
return (OK);
|
|
622
|
+
|
|
623
|
+
cxxGasPhase *gas_phase_ptr = use.Get_gas_phase_ptr();
|
|
624
|
+
if (gas_phase_ptr->Get_v_m() >= 0.01)
|
|
625
|
+
PR = true;
|
|
626
|
+
if (gas_phase_ptr->Get_type() == cxxGasPhase::GP_PRESSURE)
|
|
627
|
+
{
|
|
628
|
+
if (gas_unknown == NULL)
|
|
629
|
+
return (OK);
|
|
630
|
+
if (gas_unknown->moles < 1e-12)
|
|
631
|
+
{
|
|
632
|
+
snprintf(info, sizeof(info), "Fixed-pressure gas phase %d dissolved completely",
|
|
633
|
+
use.Get_n_gas_phase_user());
|
|
634
|
+
print_centered(info);
|
|
635
|
+
return (OK);
|
|
636
|
+
}
|
|
637
|
+
gas_phase_ptr->Set_total_moles(gas_unknown->moles);
|
|
638
|
+
gas_phase_ptr->Set_volume(gas_phase_ptr->Get_total_moles() * R_LITER_ATM * tk_x /
|
|
639
|
+
gas_phase_ptr->Get_total_p());
|
|
640
|
+
if (PR)
|
|
641
|
+
gas_phase_ptr->Set_volume(gas_phase_ptr->Get_v_m() * gas_unknown->moles);
|
|
642
|
+
}
|
|
643
|
+
/*
|
|
644
|
+
* Print heading
|
|
645
|
+
*/
|
|
646
|
+
print_centered("Gas phase");
|
|
647
|
+
output_msg(sformatf("Total pressure: %5.2f atmospheres",
|
|
648
|
+
(double) gas_phase_ptr->Get_total_p()));
|
|
649
|
+
if (gas_phase_ptr->Get_total_p() >= MAX_P_NONLLNL && llnl_temp.size() == 0)
|
|
650
|
+
output_msg(" WARNING: Program limit.\n");
|
|
651
|
+
else if (PR)
|
|
652
|
+
output_msg(" (Peng-Robinson calculation)\n");
|
|
653
|
+
else
|
|
654
|
+
output_msg(" \n");
|
|
655
|
+
output_msg(sformatf(" Gas volume: %10.2e liters\n",
|
|
656
|
+
(double) gas_phase_ptr->Get_volume()));
|
|
657
|
+
if(gas_phase_ptr->Get_total_moles() > 0)
|
|
658
|
+
{
|
|
659
|
+
if (PR)
|
|
660
|
+
{
|
|
661
|
+
output_msg(sformatf(" Molar volume: %10.2e liters/mole",
|
|
662
|
+
(double) (gas_phase_ptr->Get_v_m())));
|
|
663
|
+
}
|
|
664
|
+
else
|
|
665
|
+
{
|
|
666
|
+
output_msg(sformatf(" Molar volume: %10.2e liters/mole",
|
|
667
|
+
(double) (gas_phase_ptr->Get_volume() / gas_phase_ptr->Get_total_moles())));
|
|
668
|
+
}
|
|
669
|
+
}
|
|
670
|
+
if (/*!numerical_fixed_volume && */((PR && gas_phase_ptr->Get_v_m() <= 0.016)))
|
|
671
|
+
output_msg(" WARNING: Program limit for Peng-Robinson.\n");
|
|
672
|
+
else
|
|
673
|
+
output_msg("\n");
|
|
674
|
+
if (PR)
|
|
675
|
+
output_msg(sformatf( " P * Vm / RT: %8.5f (Compressibility Factor Z) \n",
|
|
676
|
+
(double) (gas_phase_ptr->Get_total_p() * gas_phase_ptr->Get_v_m() / (R_LITER_ATM * tk_x))));
|
|
677
|
+
|
|
678
|
+
|
|
679
|
+
output_msg(sformatf("\n%68s\n%78s\n", "Moles in gas",
|
|
680
|
+
"----------------------------------"));
|
|
681
|
+
if (PR)
|
|
682
|
+
output_msg(sformatf( "%-11s%12s%12s%7s%12s%12s%12s\n\n", "Component",
|
|
683
|
+
"log P", "P", "phi", "Initial", "Final", "Delta"));
|
|
684
|
+
else
|
|
685
|
+
output_msg(sformatf("%-18s%12s%12s%12s%12s%12s\n\n", "Component",
|
|
686
|
+
"log P", "P", "Initial", "Final", "Delta"));
|
|
687
|
+
|
|
688
|
+
for (size_t j = 0; j < gas_phase_ptr->Get_gas_comps().size(); j++)
|
|
689
|
+
{
|
|
690
|
+
/*
|
|
691
|
+
* Calculate partial pressure
|
|
692
|
+
*/
|
|
693
|
+
cxxGasComp *gc_ptr = &(gas_phase_ptr->Get_gas_comps()[j]);
|
|
694
|
+
int k;
|
|
695
|
+
class phase *phase_ptr = phase_bsearch(gc_ptr->Get_phase_name().c_str(), &k, FALSE);
|
|
696
|
+
if (phase_ptr->in == TRUE)
|
|
697
|
+
{
|
|
698
|
+
lp = -phase_ptr->lk;
|
|
699
|
+
for (rxn_ptr =
|
|
700
|
+
&phase_ptr->rxn_x.token[0] + 1;
|
|
701
|
+
rxn_ptr->s != NULL; rxn_ptr++)
|
|
702
|
+
{
|
|
703
|
+
lp += rxn_ptr->s->la * rxn_ptr->coef;
|
|
704
|
+
}
|
|
705
|
+
lp -= phase_ptr->pr_si_f;
|
|
706
|
+
moles = phase_ptr->moles_x;
|
|
707
|
+
}
|
|
708
|
+
else
|
|
709
|
+
{
|
|
710
|
+
lp = -99.99;
|
|
711
|
+
moles = 0;
|
|
712
|
+
phase_ptr->p_soln_x = 0;
|
|
713
|
+
}
|
|
714
|
+
/*
|
|
715
|
+
* Print gas composition
|
|
716
|
+
*/
|
|
717
|
+
if (state != TRANSPORT && state != PHAST)
|
|
718
|
+
{
|
|
719
|
+
initial_moles = gc_ptr->Get_moles();
|
|
720
|
+
delta_moles = phase_ptr->moles_x - gc_ptr->Get_moles();
|
|
721
|
+
}
|
|
722
|
+
else
|
|
723
|
+
{
|
|
724
|
+
initial_moles = gc_ptr->Get_initial_moles();
|
|
725
|
+
delta_moles = gc_ptr->Get_initial_moles() -
|
|
726
|
+
gc_ptr->Get_moles();
|
|
727
|
+
}
|
|
728
|
+
if (moles <= MIN_TOTAL)
|
|
729
|
+
moles = 0.0;
|
|
730
|
+
if (fabs(delta_moles) <= MIN_TOTAL)
|
|
731
|
+
delta_moles = 0.0;
|
|
732
|
+
if (PR)
|
|
733
|
+
{
|
|
734
|
+
output_msg(sformatf("%-11s%12.2f%12.3e%7.3f%12.3e%12.3e%12.3e\n",
|
|
735
|
+
phase_ptr->name,
|
|
736
|
+
(double) lp,
|
|
737
|
+
(double) phase_ptr->p_soln_x,
|
|
738
|
+
(double) phase_ptr->pr_phi,
|
|
739
|
+
(double) initial_moles,
|
|
740
|
+
(double) moles,
|
|
741
|
+
(double) delta_moles));
|
|
742
|
+
}
|
|
743
|
+
else
|
|
744
|
+
output_msg(sformatf("%-18s%12.2f%12.3e%12.3e%12.3e%12.3e\n",
|
|
745
|
+
phase_ptr->name,
|
|
746
|
+
(double) lp,
|
|
747
|
+
(double) phase_ptr->p_soln_x,
|
|
748
|
+
(double) initial_moles,
|
|
749
|
+
(double) moles,
|
|
750
|
+
(double) delta_moles));
|
|
751
|
+
//if (!strcmp(phase_ptr->name, "H2O(g)") && phase_ptr->p_soln_x == 90)
|
|
752
|
+
// output_msg(" WARNING: The pressure of H2O(g) is fixed to the program limit.\n");
|
|
753
|
+
|
|
754
|
+
}
|
|
755
|
+
output_msg("\n");
|
|
756
|
+
return (OK);
|
|
757
|
+
}
|
|
758
|
+
/* ---------------------------------------------------------------------- */
|
|
759
|
+
int Phreeqc::
|
|
760
|
+
print_ss_assemblage(void)
|
|
761
|
+
/* ---------------------------------------------------------------------- */
|
|
762
|
+
{
|
|
763
|
+
/*
|
|
764
|
+
* Prints solid solution composition if present
|
|
765
|
+
*/
|
|
766
|
+
int i, j;
|
|
767
|
+
LDBLE delta_moles;
|
|
768
|
+
LDBLE nb, nc, xb, xb1, xb2, xb1moles, xb2moles;
|
|
769
|
+
|
|
770
|
+
if (pr.ss_assemblage == FALSE || pr.all == FALSE)
|
|
771
|
+
return (OK);
|
|
772
|
+
if (use.Get_ss_assemblage_ptr() == NULL)
|
|
773
|
+
return (OK);
|
|
774
|
+
/*
|
|
775
|
+
* Print heading
|
|
776
|
+
*/
|
|
777
|
+
print_centered("Solid solutions");
|
|
778
|
+
output_msg(sformatf("\n"));
|
|
779
|
+
output_msg(sformatf("%-15s %22s %11s %11s %11s\n\n",
|
|
780
|
+
"Solid solution", "Component", "Moles", "Delta moles",
|
|
781
|
+
"Mole fract"));
|
|
782
|
+
/*
|
|
783
|
+
* Print solid solutions
|
|
784
|
+
*/
|
|
785
|
+
std::vector<cxxSS *> ss_ptrs = use.Get_ss_assemblage_ptr()->Vectorize();
|
|
786
|
+
for (j = 0; j < (int) ss_ptrs.size(); j++)
|
|
787
|
+
{
|
|
788
|
+
cxxSS * ss_ptr = ss_ptrs[j];
|
|
789
|
+
if (ss_ptr->Get_ss_in())
|
|
790
|
+
{
|
|
791
|
+
/* solid solution name, moles */
|
|
792
|
+
output_msg(sformatf("%-15s %22s %11.2e\n",
|
|
793
|
+
ss_ptr->Get_name().c_str(), " ",
|
|
794
|
+
(double) ss_ptr->Get_total_moles()));
|
|
795
|
+
/* component name, moles, delta moles, mole fraction */
|
|
796
|
+
|
|
797
|
+
for (i = 0; i < (int) ss_ptr->Get_ss_comps().size(); i++)
|
|
798
|
+
{
|
|
799
|
+
cxxSScomp *comp_ptr = &(ss_ptr->Get_ss_comps()[i]);
|
|
800
|
+
if (state != TRANSPORT && state != PHAST)
|
|
801
|
+
{
|
|
802
|
+
delta_moles =
|
|
803
|
+
comp_ptr->Get_moles() -
|
|
804
|
+
comp_ptr->Get_initial_moles() -
|
|
805
|
+
comp_ptr->Get_delta();
|
|
806
|
+
}
|
|
807
|
+
else
|
|
808
|
+
{
|
|
809
|
+
delta_moles =
|
|
810
|
+
comp_ptr->Get_moles() -
|
|
811
|
+
comp_ptr->Get_init_moles();
|
|
812
|
+
}
|
|
813
|
+
output_msg(sformatf(
|
|
814
|
+
"%15s %22s %11.2e %11.2e %11.2e\n", " ",
|
|
815
|
+
comp_ptr->Get_name().c_str(),
|
|
816
|
+
(double) comp_ptr->Get_moles(), (double) delta_moles,
|
|
817
|
+
(double) (comp_ptr->Get_moles() /
|
|
818
|
+
ss_ptr->Get_total_moles())));
|
|
819
|
+
}
|
|
820
|
+
if (ss_ptr->Get_miscibility())
|
|
821
|
+
{
|
|
822
|
+
cxxSScomp *comp0_ptr = &(ss_ptr->Get_ss_comps()[0]);
|
|
823
|
+
cxxSScomp *comp1_ptr = &(ss_ptr->Get_ss_comps()[1]);
|
|
824
|
+
nc = comp0_ptr->Get_moles();
|
|
825
|
+
nb = comp1_ptr->Get_moles();
|
|
826
|
+
xb = nb / (nb + nc);
|
|
827
|
+
xb1 = ss_ptr->Get_xb1();
|
|
828
|
+
xb2 = ss_ptr->Get_xb2();
|
|
829
|
+
|
|
830
|
+
if (xb > xb1 && xb < xb2)
|
|
831
|
+
{
|
|
832
|
+
xb2moles = (xb1 - 1) / xb1 * nb + nc;
|
|
833
|
+
xb2moles = xb2moles / ((xb1 - 1) / xb1 * xb2 + (1 - xb2));
|
|
834
|
+
xb1moles = (nb - xb2moles * xb2) / xb1;
|
|
835
|
+
output_msg(sformatf(
|
|
836
|
+
"\n%14s Solid solution is in miscibility gap\n",
|
|
837
|
+
" "));
|
|
838
|
+
output_msg(sformatf(
|
|
839
|
+
"%14s End members in pct of %s\n\n", " ",
|
|
840
|
+
comp1_ptr->Get_name().c_str()));
|
|
841
|
+
output_msg(sformatf("%22s %11g pct %11.2e\n",
|
|
842
|
+
" ", (double) xb1, (double) xb1moles));
|
|
843
|
+
output_msg(sformatf("%22s %11g pct %11.2e\n",
|
|
844
|
+
" ", (double) xb2, (double) xb2moles));
|
|
845
|
+
}
|
|
846
|
+
}
|
|
847
|
+
}
|
|
848
|
+
else
|
|
849
|
+
{
|
|
850
|
+
/* solid solution name, moles */
|
|
851
|
+
output_msg(sformatf("%-15s %22s %11.2e\n",
|
|
852
|
+
ss_ptr->Get_name().c_str(), " ",
|
|
853
|
+
(double) 0.0));
|
|
854
|
+
/* component name, moles, delta moles, mole fraction */
|
|
855
|
+
for (i = 0; i < (int) ss_ptr->Get_ss_comps().size(); i++)
|
|
856
|
+
{
|
|
857
|
+
cxxSScomp *comp_ptr = &(ss_ptr->Get_ss_comps()[i]);
|
|
858
|
+
if (state != TRANSPORT && state != PHAST)
|
|
859
|
+
{
|
|
860
|
+
delta_moles =
|
|
861
|
+
comp_ptr->Get_moles() -
|
|
862
|
+
comp_ptr->Get_initial_moles() -
|
|
863
|
+
comp_ptr->Get_delta();
|
|
864
|
+
}
|
|
865
|
+
else
|
|
866
|
+
{
|
|
867
|
+
delta_moles =
|
|
868
|
+
comp_ptr->Get_moles() -
|
|
869
|
+
comp_ptr->Get_init_moles();
|
|
870
|
+
}
|
|
871
|
+
output_msg(sformatf(
|
|
872
|
+
"%15s %22s %11.2e %11.2e %11.2e\n", " ",
|
|
873
|
+
comp_ptr->Get_name().c_str(),
|
|
874
|
+
(double) 0, (double) delta_moles, (double) 0));
|
|
875
|
+
}
|
|
876
|
+
}
|
|
877
|
+
}
|
|
878
|
+
output_msg(sformatf("\n"));
|
|
879
|
+
return (OK);
|
|
880
|
+
}
|
|
881
|
+
/* ---------------------------------------------------------------------- */
|
|
882
|
+
int Phreeqc::
|
|
883
|
+
print_reaction(void)
|
|
884
|
+
/* ---------------------------------------------------------------------- */
|
|
885
|
+
{
|
|
886
|
+
/*
|
|
887
|
+
* prints irreversible reaction as defined and as
|
|
888
|
+
* relative moles of each element and total amount
|
|
889
|
+
* of reaction
|
|
890
|
+
*/
|
|
891
|
+
cxxReaction *reaction_ptr;
|
|
892
|
+
if (pr.use == FALSE || pr.all == FALSE)
|
|
893
|
+
return (OK);
|
|
894
|
+
if (state < REACTION || use.Get_reaction_in() == FALSE)
|
|
895
|
+
return (OK);
|
|
896
|
+
if (state == TRANSPORT && transport_step == 0)
|
|
897
|
+
return (OK);
|
|
898
|
+
reaction_ptr = use.Get_reaction_ptr();
|
|
899
|
+
/*
|
|
900
|
+
* Print amount of reaction
|
|
901
|
+
*/
|
|
902
|
+
output_msg(sformatf("Reaction %d.\t%s\n\n", use.Get_n_reaction_user(),
|
|
903
|
+
reaction_ptr->Get_description().c_str()));
|
|
904
|
+
output_msg(sformatf(
|
|
905
|
+
"\t%11.3e moles of the following reaction have been added:\n\n",
|
|
906
|
+
(double) step_x));
|
|
907
|
+
/*
|
|
908
|
+
* Print reaction
|
|
909
|
+
*/
|
|
910
|
+
output_msg(sformatf("\t%-15s%10s\n", " ", "Relative"));
|
|
911
|
+
output_msg(sformatf("\t%-15s%10s\n\n", "Reactant", "moles"));
|
|
912
|
+
cxxNameDouble::const_iterator cit = reaction_ptr->Get_reactantList().begin();
|
|
913
|
+
for ( ; cit != reaction_ptr->Get_reactantList().end(); cit++)
|
|
914
|
+
{
|
|
915
|
+
output_msg(sformatf("\t%-15s%13.5f\n",
|
|
916
|
+
cit->first.c_str(), (double) cit->second));
|
|
917
|
+
}
|
|
918
|
+
output_msg(sformatf("\n"));
|
|
919
|
+
/*
|
|
920
|
+
* Debug
|
|
921
|
+
*/
|
|
922
|
+
|
|
923
|
+
output_msg(sformatf("\t%-15s%10s\n", " ", "Relative"));
|
|
924
|
+
output_msg(sformatf("\t%-15s%10s\n", "Element", "moles"));
|
|
925
|
+
cit = reaction_ptr->Get_elementList().begin();
|
|
926
|
+
for ( ; cit != reaction_ptr->Get_elementList().end(); cit++)
|
|
927
|
+
{
|
|
928
|
+
class element * elt_ptr = element_store(cit->first.c_str());
|
|
929
|
+
assert(elt_ptr);
|
|
930
|
+
output_msg(sformatf("\t%-15s%13.5f\n",
|
|
931
|
+
elt_ptr->name,
|
|
932
|
+
(double) cit->second));
|
|
933
|
+
}
|
|
934
|
+
output_msg(sformatf("\n"));
|
|
935
|
+
return (OK);
|
|
936
|
+
}
|
|
937
|
+
/* ---------------------------------------------------------------------- */
|
|
938
|
+
int Phreeqc::
|
|
939
|
+
print_kinetics(void)
|
|
940
|
+
/* ---------------------------------------------------------------------- */
|
|
941
|
+
{
|
|
942
|
+
/*
|
|
943
|
+
* prints kinetic reaction,
|
|
944
|
+
* should be called only on final kinetic step
|
|
945
|
+
*/
|
|
946
|
+
LDBLE sim_time;
|
|
947
|
+
cxxKinetics *kinetics_ptr;
|
|
948
|
+
if (pr.kinetics == FALSE || pr.all == FALSE)
|
|
949
|
+
return (OK);
|
|
950
|
+
if (state < REACTION)
|
|
951
|
+
return (OK);
|
|
952
|
+
kinetics_ptr = NULL;
|
|
953
|
+
if (use.Get_kinetics_in() == TRUE)
|
|
954
|
+
{
|
|
955
|
+
if (state == TRANSPORT || state == PHAST || state == ADVECTION)
|
|
956
|
+
{
|
|
957
|
+
kinetics_ptr = Utilities::Rxn_find(Rxn_kinetics_map, use.Get_n_kinetics_user());
|
|
958
|
+
}
|
|
959
|
+
else
|
|
960
|
+
{
|
|
961
|
+
kinetics_ptr = Utilities::Rxn_find(Rxn_kinetics_map, -2);
|
|
962
|
+
}
|
|
963
|
+
}
|
|
964
|
+
if (kinetics_ptr == NULL)
|
|
965
|
+
return (OK);
|
|
966
|
+
/*
|
|
967
|
+
* determine time step
|
|
968
|
+
*/
|
|
969
|
+
if (state == TRANSPORT || state == PHAST)
|
|
970
|
+
{
|
|
971
|
+
kin_time_x = timest;
|
|
972
|
+
}
|
|
973
|
+
else if (state == ADVECTION)
|
|
974
|
+
{
|
|
975
|
+
kin_time_x = advection_kin_time;
|
|
976
|
+
}
|
|
977
|
+
sim_time = 0.;
|
|
978
|
+
if (run_info.Get_run_cells())
|
|
979
|
+
{
|
|
980
|
+
sim_time = rate_sim_time;
|
|
981
|
+
}
|
|
982
|
+
else
|
|
983
|
+
{
|
|
984
|
+
if (incremental_reactions == TRUE)
|
|
985
|
+
{
|
|
986
|
+
if (!kinetics_ptr->Get_equalIncrements())
|
|
987
|
+
{
|
|
988
|
+
for (int i = 0; i < reaction_step; i++)
|
|
989
|
+
{
|
|
990
|
+
if (i < (int) kinetics_ptr->Get_steps().size())
|
|
991
|
+
{
|
|
992
|
+
sim_time += kinetics_ptr->Get_steps()[i];
|
|
993
|
+
}
|
|
994
|
+
else
|
|
995
|
+
{
|
|
996
|
+
sim_time += kinetics_ptr->Get_steps().back();
|
|
997
|
+
}
|
|
998
|
+
}
|
|
999
|
+
}
|
|
1000
|
+
else
|
|
1001
|
+
{
|
|
1002
|
+
if (reaction_step > kinetics_ptr->Get_count())
|
|
1003
|
+
{
|
|
1004
|
+
sim_time = kinetics_ptr->Get_steps().front();
|
|
1005
|
+
}
|
|
1006
|
+
else
|
|
1007
|
+
{
|
|
1008
|
+
sim_time =
|
|
1009
|
+
reaction_step * kinetics_ptr->Get_steps().front() /
|
|
1010
|
+
((LDBLE) (kinetics_ptr->Get_count()));
|
|
1011
|
+
}
|
|
1012
|
+
}
|
|
1013
|
+
}
|
|
1014
|
+
}
|
|
1015
|
+
/*
|
|
1016
|
+
* Print amount of reaction
|
|
1017
|
+
*/
|
|
1018
|
+
if (phast == FALSE)
|
|
1019
|
+
{
|
|
1020
|
+
output_msg(sformatf("Kinetics %d.\t%s\n\n",
|
|
1021
|
+
use.Get_n_kinetics_user(), kinetics_ptr->Get_description().c_str()));
|
|
1022
|
+
}
|
|
1023
|
+
else
|
|
1024
|
+
{
|
|
1025
|
+
output_msg(sformatf("Kinetics.\n\n"));
|
|
1026
|
+
}
|
|
1027
|
+
/*
|
|
1028
|
+
* Print reaction
|
|
1029
|
+
*/
|
|
1030
|
+
if (state == TRANSPORT)
|
|
1031
|
+
{
|
|
1032
|
+
output_msg(sformatf("\tTime: %g seconds\n",
|
|
1033
|
+
(double) (initial_total_time + transport_step * timest)));
|
|
1034
|
+
output_msg(sformatf("\tTime step: %g seconds\n\n",
|
|
1035
|
+
(double) kin_time_x));
|
|
1036
|
+
}
|
|
1037
|
+
else if (state == ADVECTION)
|
|
1038
|
+
{
|
|
1039
|
+
output_msg(sformatf("\tTime: %g seconds\n",
|
|
1040
|
+
(double) (initial_total_time +
|
|
1041
|
+
advection_step * advection_kin_time)));
|
|
1042
|
+
output_msg(sformatf("\tTime step: %g seconds\n\n",
|
|
1043
|
+
(double) kin_time_x));
|
|
1044
|
+
}
|
|
1045
|
+
else if (state == PHAST)
|
|
1046
|
+
{
|
|
1047
|
+
output_msg(sformatf("\tTime: %g seconds\n",
|
|
1048
|
+
(double) rate_sim_time_end));
|
|
1049
|
+
output_msg(sformatf("\tTime step: %g seconds\n\n",
|
|
1050
|
+
(double) kin_time_x));
|
|
1051
|
+
}
|
|
1052
|
+
else if (state == REACTION)
|
|
1053
|
+
{
|
|
1054
|
+
if (incremental_reactions == FALSE)
|
|
1055
|
+
{
|
|
1056
|
+
output_msg(sformatf("\tTime step: %g seconds\n\n",
|
|
1057
|
+
(double) kin_time_x));
|
|
1058
|
+
}
|
|
1059
|
+
else
|
|
1060
|
+
{
|
|
1061
|
+
output_msg(sformatf(
|
|
1062
|
+
"\tTime step: %g seconds (Incremented time: %g seconds)\n\n",
|
|
1063
|
+
(double) kin_time_x, (double) sim_time));
|
|
1064
|
+
}
|
|
1065
|
+
}
|
|
1066
|
+
output_msg(sformatf("\t%-15s%12s%12s %-15s%12s\n\n",
|
|
1067
|
+
"Rate name", "Delta Moles", "Total Moles", "Reactant",
|
|
1068
|
+
"Coefficient"));
|
|
1069
|
+
for (size_t i = 0; i < kinetics_ptr->Get_kinetics_comps().size(); i++)
|
|
1070
|
+
{
|
|
1071
|
+
cxxKineticsComp *kinetics_comp_ptr = &(kinetics_ptr->Get_kinetics_comps()[i]);
|
|
1072
|
+
if (state != TRANSPORT && state != PHAST)
|
|
1073
|
+
{
|
|
1074
|
+
output_msg(sformatf("\t%-15s%12.3e%12.3e",
|
|
1075
|
+
kinetics_comp_ptr->Get_rate_name().c_str(),
|
|
1076
|
+
(double) -kinetics_comp_ptr->Get_moles(),
|
|
1077
|
+
(double) kinetics_comp_ptr->Get_m()));
|
|
1078
|
+
}
|
|
1079
|
+
else
|
|
1080
|
+
{
|
|
1081
|
+
output_msg(sformatf("\t%-15s%12.3e%12.3e",
|
|
1082
|
+
kinetics_comp_ptr->Get_rate_name().c_str(),
|
|
1083
|
+
(double) (kinetics_comp_ptr->Get_m() -
|
|
1084
|
+
kinetics_comp_ptr->Get_initial_moles()),
|
|
1085
|
+
(double) kinetics_comp_ptr->Get_m()));
|
|
1086
|
+
}
|
|
1087
|
+
cxxNameDouble::iterator it = kinetics_comp_ptr->Get_namecoef().begin();
|
|
1088
|
+
for ( ; it != kinetics_comp_ptr->Get_namecoef().end(); it++)
|
|
1089
|
+
{
|
|
1090
|
+
std::string name = it->first;
|
|
1091
|
+
LDBLE coef = it->second;
|
|
1092
|
+
if (it == kinetics_comp_ptr->Get_namecoef().begin())
|
|
1093
|
+
{
|
|
1094
|
+
output_msg(sformatf(" %-15s%12g\n",
|
|
1095
|
+
name.c_str(),
|
|
1096
|
+
(double) coef));
|
|
1097
|
+
}
|
|
1098
|
+
else
|
|
1099
|
+
{
|
|
1100
|
+
output_msg(sformatf("\t%39s %-15s%12g\n", " ",
|
|
1101
|
+
name.c_str(),
|
|
1102
|
+
(double) coef));
|
|
1103
|
+
}
|
|
1104
|
+
}
|
|
1105
|
+
}
|
|
1106
|
+
output_msg(sformatf("\n"));
|
|
1107
|
+
return (OK);
|
|
1108
|
+
}
|
|
1109
|
+
#ifdef SKIP
|
|
1110
|
+
/* ---------------------------------------------------------------------- */
|
|
1111
|
+
int Phreeqc::
|
|
1112
|
+
print_master_reactions(void)
|
|
1113
|
+
/* ---------------------------------------------------------------------- */
|
|
1114
|
+
{
|
|
1115
|
+
/*
|
|
1116
|
+
* Debugging print routine to test primary and secondary reactions
|
|
1117
|
+
*/
|
|
1118
|
+
int i;
|
|
1119
|
+
class rxn_token *next_token;
|
|
1120
|
+
|
|
1121
|
+
for (i = 0; i < (int)master.size(); i++)
|
|
1122
|
+
{
|
|
1123
|
+
output_msg(sformatf("%s\t%s\n\tPrimary reaction\n",
|
|
1124
|
+
master[i]->elt->name, master[i]->s->name));
|
|
1125
|
+
next_token = master[i]->rxn_primary.token;
|
|
1126
|
+
for (; next_token->s != NULL; next_token++)
|
|
1127
|
+
{
|
|
1128
|
+
output_msg(sformatf("\t\t%s\t%f\n", next_token->s->name,
|
|
1129
|
+
(double) next_token->coef));
|
|
1130
|
+
}
|
|
1131
|
+
output_msg(sformatf("\n\tSecondary reaction:\n"));
|
|
1132
|
+
if (master[i]->rxn_secondary != NULL)
|
|
1133
|
+
{
|
|
1134
|
+
next_token = master[i]->rxn_secondary.token;
|
|
1135
|
+
for (; next_token->s != NULL; next_token++)
|
|
1136
|
+
{
|
|
1137
|
+
output_msg(sformatf("\t\t%s\t%f\n",
|
|
1138
|
+
next_token->s->name, (double) next_token->coef));
|
|
1139
|
+
}
|
|
1140
|
+
}
|
|
1141
|
+
output_msg(sformatf("\n\tRedox reaction:\n"));
|
|
1142
|
+
if (*(master[i]->pe_rxn) != NULL)
|
|
1143
|
+
{
|
|
1144
|
+
next_token = (*(master[i]->pe_rxn))->token;
|
|
1145
|
+
for (; next_token->s != NULL; next_token++)
|
|
1146
|
+
{
|
|
1147
|
+
output_msg(sformatf("\t\t%s\t%f\n",
|
|
1148
|
+
next_token->s->name, (double) next_token->coef));
|
|
1149
|
+
}
|
|
1150
|
+
}
|
|
1151
|
+
output_msg(sformatf("\n"));
|
|
1152
|
+
}
|
|
1153
|
+
return (OK);
|
|
1154
|
+
}
|
|
1155
|
+
#endif
|
|
1156
|
+
/* ---------------------------------------------------------------------- */
|
|
1157
|
+
int Phreeqc::
|
|
1158
|
+
print_mix(void)
|
|
1159
|
+
/* ---------------------------------------------------------------------- */
|
|
1160
|
+
{
|
|
1161
|
+
/*
|
|
1162
|
+
* prints definition of mixing, solution number and multiplier
|
|
1163
|
+
*/
|
|
1164
|
+
cxxMix * mix_ptr;
|
|
1165
|
+
cxxSolution *solution_ptr;
|
|
1166
|
+
|
|
1167
|
+
if (pr.use == FALSE || pr.all == FALSE)
|
|
1168
|
+
return (OK);
|
|
1169
|
+
if (use.Get_mix_in() == FALSE || state < REACTION)
|
|
1170
|
+
return (OK);
|
|
1171
|
+
if (state == TRANSPORT)
|
|
1172
|
+
{
|
|
1173
|
+
mix_ptr = Utilities::Rxn_find(Rxn_mix_map, use.Get_n_mix_user());
|
|
1174
|
+
}
|
|
1175
|
+
else
|
|
1176
|
+
{
|
|
1177
|
+
mix_ptr = Utilities::Rxn_find(Rxn_mix_map, use.Get_n_mix_user_orig());
|
|
1178
|
+
}
|
|
1179
|
+
if (mix_ptr == NULL)
|
|
1180
|
+
{
|
|
1181
|
+
mix_ptr = use.Get_mix_ptr();
|
|
1182
|
+
}
|
|
1183
|
+
/*
|
|
1184
|
+
* Print mixture data
|
|
1185
|
+
*/
|
|
1186
|
+
if (mix_ptr == NULL)
|
|
1187
|
+
{
|
|
1188
|
+
return (OK);
|
|
1189
|
+
|
|
1190
|
+
}
|
|
1191
|
+
if (state == TRANSPORT)
|
|
1192
|
+
{
|
|
1193
|
+
output_msg(sformatf("Mixture %d.\t%s\n\n", use.Get_n_mix_user(),
|
|
1194
|
+
mix_ptr->Get_description().c_str()));
|
|
1195
|
+
}
|
|
1196
|
+
else
|
|
1197
|
+
{
|
|
1198
|
+
output_msg(sformatf("Mixture %d.\t%s\n\n", mix_ptr->Get_n_user(),
|
|
1199
|
+
mix_ptr->Get_description().c_str()));
|
|
1200
|
+
}
|
|
1201
|
+
std::map<int, LDBLE>::const_iterator cit;
|
|
1202
|
+
for (cit = mix_ptr->Get_mixComps().begin(); cit != mix_ptr->Get_mixComps().end(); cit++)
|
|
1203
|
+
{
|
|
1204
|
+
solution_ptr = Utilities::Rxn_find(Rxn_solution_map, cit->first);
|
|
1205
|
+
if (solution_ptr == NULL)
|
|
1206
|
+
{
|
|
1207
|
+
input_error++;
|
|
1208
|
+
return (ERROR);
|
|
1209
|
+
}
|
|
1210
|
+
output_msg(sformatf("\t%11.3e Solution %d\t%-55s\n",
|
|
1211
|
+
(double) cit->second,
|
|
1212
|
+
cit->first, solution_ptr->Get_description().c_str()));
|
|
1213
|
+
}
|
|
1214
|
+
output_msg(sformatf("\n"));
|
|
1215
|
+
return (OK);
|
|
1216
|
+
}
|
|
1217
|
+
/* ---------------------------------------------------------------------- */
|
|
1218
|
+
int Phreeqc::
|
|
1219
|
+
print_saturation_indices(void)
|
|
1220
|
+
/* ---------------------------------------------------------------------- */
|
|
1221
|
+
{
|
|
1222
|
+
/*
|
|
1223
|
+
* Prints saturation indices of all applicable pure_phases
|
|
1224
|
+
*/
|
|
1225
|
+
int i;
|
|
1226
|
+
LDBLE si, iap;
|
|
1227
|
+
LDBLE lk;
|
|
1228
|
+
LDBLE la_eminus;
|
|
1229
|
+
class rxn_token *rxn_ptr;
|
|
1230
|
+
CReaction *reaction_ptr;
|
|
1231
|
+
bool gas = true;
|
|
1232
|
+
|
|
1233
|
+
if (pr.saturation_indices == FALSE || pr.all == FALSE)
|
|
1234
|
+
return (OK);
|
|
1235
|
+
if (state == INITIAL_SOLUTION)
|
|
1236
|
+
{
|
|
1237
|
+
iap = 0;
|
|
1238
|
+
for (size_t tok = 1; tok < pe_x[default_pe_x].Get_tokens().size() - 1; tok++)
|
|
1239
|
+
{
|
|
1240
|
+
iap += pe_x[default_pe_x].Get_tokens()[tok].coef * pe_x[default_pe_x].Get_tokens()[tok].s->la;
|
|
1241
|
+
/* fprintf(output,"\t%s\t%f\t%f\n", rxn_ptr->s->name, rxn_ptr->coef, rxn_ptr->s->la ); */
|
|
1242
|
+
}
|
|
1243
|
+
lk = k_calc(pe_x[default_pe_x].Get_logk(), tk_x, patm_x * PASCAL_PER_ATM);
|
|
1244
|
+
la_eminus = lk + iap;
|
|
1245
|
+
/* fprintf(output,"\t%s\t%f\n", "pe", si ); */
|
|
1246
|
+
}
|
|
1247
|
+
else
|
|
1248
|
+
{
|
|
1249
|
+
la_eminus = s_eminus->la;
|
|
1250
|
+
}
|
|
1251
|
+
/* If a fixed pressure gas-phase disappeared, no PR for the SI's of gases... */
|
|
1252
|
+
if (use.Get_gas_phase_ptr() != NULL)
|
|
1253
|
+
{
|
|
1254
|
+
cxxGasPhase * gas_phase_ptr = use.Get_gas_phase_ptr();
|
|
1255
|
+
if (gas_phase_ptr->Get_type() == cxxGasPhase::GP_PRESSURE)
|
|
1256
|
+
{
|
|
1257
|
+
if (gas_unknown == NULL || gas_unknown->moles < 1e-12)
|
|
1258
|
+
gas = false;
|
|
1259
|
+
}
|
|
1260
|
+
}
|
|
1261
|
+
|
|
1262
|
+
/*
|
|
1263
|
+
* Print heading
|
|
1264
|
+
*/
|
|
1265
|
+
print_centered("Saturation indices");
|
|
1266
|
+
output_msg(sformatf(" %-15s%9s%8s%9s%3d%4s%3d%4s\n\n", "Phase", "SI**",
|
|
1267
|
+
"log IAP", "log K(", int(tk_x), " K, ", int(floor(patm_x + 0.5)), " atm)"));
|
|
1268
|
+
|
|
1269
|
+
for (i = 0; i < (int)phases.size(); i++)
|
|
1270
|
+
{
|
|
1271
|
+
if (phases[i]->in == FALSE || phases[i]->type != SOLID)
|
|
1272
|
+
continue;
|
|
1273
|
+
/* check for solids and gases in equation */
|
|
1274
|
+
if (phases[i]->replaced)
|
|
1275
|
+
reaction_ptr = &phases[i]->rxn_s;
|
|
1276
|
+
else
|
|
1277
|
+
reaction_ptr = &phases[i]->rxn;
|
|
1278
|
+
/*
|
|
1279
|
+
* Print saturation index
|
|
1280
|
+
*/
|
|
1281
|
+
reaction_ptr->logk[delta_v] = calc_delta_v(*reaction_ptr, true) -
|
|
1282
|
+
phases[i]->logk[vm0];
|
|
1283
|
+
if (reaction_ptr->logk[delta_v])
|
|
1284
|
+
mu_terms_in_logk = true;
|
|
1285
|
+
lk = k_calc(reaction_ptr->logk, tk_x, patm_x * PASCAL_PER_ATM);
|
|
1286
|
+
iap = 0.0;
|
|
1287
|
+
for (rxn_ptr = &reaction_ptr->token[0] + 1; rxn_ptr->s != NULL;
|
|
1288
|
+
rxn_ptr++)
|
|
1289
|
+
{
|
|
1290
|
+
if (rxn_ptr->s != s_eminus)
|
|
1291
|
+
{
|
|
1292
|
+
iap += (rxn_ptr->s->lm + rxn_ptr->s->lg) * rxn_ptr->coef;
|
|
1293
|
+
}
|
|
1294
|
+
else
|
|
1295
|
+
{
|
|
1296
|
+
iap += la_eminus * rxn_ptr->coef;
|
|
1297
|
+
}
|
|
1298
|
+
}
|
|
1299
|
+
si = -lk + iap;
|
|
1300
|
+
|
|
1301
|
+
output_msg(sformatf(" %-15s%7.2f %8.2f%8.2f %s",
|
|
1302
|
+
phases[i]->name, (double) si, (double) iap, (double) lk,
|
|
1303
|
+
phases[i]->formula));
|
|
1304
|
+
if (gas && phases[i]->pr_in && phases[i]->pr_p)
|
|
1305
|
+
{
|
|
1306
|
+
if (phases[i]->moles_x || state == INITIAL_SOLUTION)
|
|
1307
|
+
{
|
|
1308
|
+
output_msg(sformatf("\t%s%5.1f%s%5.3f",
|
|
1309
|
+
" Pressure ", (double) phases[i]->pr_p, " atm, phi ", (double) phases[i]->pr_phi));
|
|
1310
|
+
} else
|
|
1311
|
+
{
|
|
1312
|
+
for (int j = 0; j < count_unknowns; j++)
|
|
1313
|
+
{
|
|
1314
|
+
if (x[j]->type != PP)
|
|
1315
|
+
continue;
|
|
1316
|
+
if (!strcmp(x[j]->phase->name, phases[i]->name))
|
|
1317
|
+
{
|
|
1318
|
+
if (x[j]->moles)
|
|
1319
|
+
output_msg(sformatf("\t%s%5.1f%s%5.3f",
|
|
1320
|
+
" Pressure ", (double) phases[i]->pr_p, " atm, phi ", (double) phases[i]->pr_phi));
|
|
1321
|
+
break;
|
|
1322
|
+
}
|
|
1323
|
+
}
|
|
1324
|
+
}
|
|
1325
|
+
}
|
|
1326
|
+
phases[i]->pr_in = false;
|
|
1327
|
+
output_msg("\n");
|
|
1328
|
+
}
|
|
1329
|
+
output_msg(sformatf("\n%s\n%s",
|
|
1330
|
+
"**For a gas, SI = log10(fugacity). Fugacity = pressure * phi / 1 atm.",
|
|
1331
|
+
" For ideal gases, phi = 1."));
|
|
1332
|
+
output_msg("\n\n");
|
|
1333
|
+
|
|
1334
|
+
return (OK);
|
|
1335
|
+
}
|
|
1336
|
+
/* ---------------------------------------------------------------------- */
|
|
1337
|
+
int Phreeqc::
|
|
1338
|
+
print_pp_assemblage(void)
|
|
1339
|
+
/* ---------------------------------------------------------------------- */
|
|
1340
|
+
{
|
|
1341
|
+
/*
|
|
1342
|
+
* Prints saturation indices and masses of pure_phases in pp_assemblage
|
|
1343
|
+
*/
|
|
1344
|
+
int j, k;
|
|
1345
|
+
LDBLE si, iap, lk;
|
|
1346
|
+
char token[MAX_LENGTH];
|
|
1347
|
+
class rxn_token *rxn_ptr;
|
|
1348
|
+
class phase *phase_ptr;
|
|
1349
|
+
|
|
1350
|
+
if (pr.pp_assemblage == FALSE || pr.all == FALSE)
|
|
1351
|
+
return (OK);
|
|
1352
|
+
if (pure_phase_unknown == NULL)
|
|
1353
|
+
return (OK);
|
|
1354
|
+
/*
|
|
1355
|
+
* Print heading
|
|
1356
|
+
*/
|
|
1357
|
+
print_centered("Phase assemblage");
|
|
1358
|
+
output_msg(sformatf("%73s\n", "Moles in assemblage"));
|
|
1359
|
+
output_msg(sformatf("%-14s%8s%2s%7s %11s", "Phase", "SI", " ", "log IAP",
|
|
1360
|
+
"log K(T, P)"));
|
|
1361
|
+
output_msg(sformatf(" %8s%12s%12s", " Initial", " Final",
|
|
1362
|
+
" Delta"));
|
|
1363
|
+
output_msg("\n\n");
|
|
1364
|
+
|
|
1365
|
+
for (j = 0; j < count_unknowns; j++)
|
|
1366
|
+
{
|
|
1367
|
+
if (x[j]->type != PP)
|
|
1368
|
+
continue;
|
|
1369
|
+
//cxxPPassemblage * pp_assemblage_ptr = Utilities::Rxn_find(Rxn_pp_assemblage_map, use.Get_n_pp_assemblage_user());
|
|
1370
|
+
//cxxPPassemblageComp * comp_ptr = pp_assemblage_ptr->Find(x[j]->pp_assemblage_comp_name);
|
|
1371
|
+
cxxPPassemblageComp * comp_ptr = (cxxPPassemblageComp * ) x[j]->pp_assemblage_comp_ptr; // appt, is sometimes lost??
|
|
1372
|
+
/*
|
|
1373
|
+
* Print saturation index
|
|
1374
|
+
*/
|
|
1375
|
+
iap = 0.0;
|
|
1376
|
+
phase_ptr = x[j]->phase;
|
|
1377
|
+
if (x[j]->phase->rxn_x.token.size() == 0 || phase_ptr->in == FALSE)
|
|
1378
|
+
{
|
|
1379
|
+
output_msg(sformatf("%-18s%23s", x[j]->phase->name,
|
|
1380
|
+
"Element not present."));
|
|
1381
|
+
}
|
|
1382
|
+
else
|
|
1383
|
+
{
|
|
1384
|
+
phase_ptr = x[j]->phase;
|
|
1385
|
+
phase_ptr->rxn.logk[delta_v] = calc_delta_v(*&phase_ptr->rxn, true) -
|
|
1386
|
+
phase_ptr->logk[vm0];
|
|
1387
|
+
if (phase_ptr->rxn.logk[delta_v])
|
|
1388
|
+
mu_terms_in_logk = true;
|
|
1389
|
+
lk = k_calc(phase_ptr->rxn.logk, tk_x, patm_x * PASCAL_PER_ATM);
|
|
1390
|
+
for (rxn_ptr = &phase_ptr->rxn.token[0] + 1; rxn_ptr->s != NULL;
|
|
1391
|
+
rxn_ptr++)
|
|
1392
|
+
{
|
|
1393
|
+
if (rxn_ptr->s != s_eminus)
|
|
1394
|
+
{
|
|
1395
|
+
iap += (rxn_ptr->s->lm + rxn_ptr->s->lg) * rxn_ptr->coef;
|
|
1396
|
+
}
|
|
1397
|
+
else
|
|
1398
|
+
{
|
|
1399
|
+
iap += s_eminus->la * rxn_ptr->coef;
|
|
1400
|
+
}
|
|
1401
|
+
}
|
|
1402
|
+
si = -lk + iap;
|
|
1403
|
+
/*
|
|
1404
|
+
for (rxn_ptr = x[j]->phase->rxn_x.token + 1; rxn_ptr->s != NULL; rxn_ptr++) {
|
|
1405
|
+
iap += rxn_ptr->s->la * rxn_ptr->coef;
|
|
1406
|
+
}
|
|
1407
|
+
si = -x[j]->phase->lk + iap;
|
|
1408
|
+
output_msg(OUTPUT_MESSAGE,"\t%-15s%7.2f%8.2f%8.2f", x[j]->phase->name, (double) si, (double) iap, (double) x[j]->phase->lk);
|
|
1409
|
+
*/
|
|
1410
|
+
output_msg(sformatf("%-14s%8.2f %7.2f %8.2f",
|
|
1411
|
+
x[j]->phase->name, (double) si, (double) iap, (double) lk));
|
|
1412
|
+
}
|
|
1413
|
+
/*
|
|
1414
|
+
* Print pure phase assemblage data
|
|
1415
|
+
*/
|
|
1416
|
+
if (x[j]->moles < 0.0)
|
|
1417
|
+
x[j]->moles = 0.0;
|
|
1418
|
+
if (state != TRANSPORT && state != PHAST)
|
|
1419
|
+
{
|
|
1420
|
+
snprintf(token, sizeof(token), " %11.3e %11.3e %11.3e",
|
|
1421
|
+
(double) (comp_ptr->Get_moles() +
|
|
1422
|
+
comp_ptr->Get_delta()), (double) x[j]->moles,
|
|
1423
|
+
(double) (x[j]->moles - comp_ptr->Get_moles() -
|
|
1424
|
+
comp_ptr->Get_delta()));
|
|
1425
|
+
}
|
|
1426
|
+
else
|
|
1427
|
+
{
|
|
1428
|
+
snprintf(token, sizeof(token), " %11.3e %11.3e %11.3e",
|
|
1429
|
+
(double) comp_ptr->Get_initial_moles(),
|
|
1430
|
+
(double) x[j]->moles,
|
|
1431
|
+
(double) (x[j]->moles - comp_ptr->Get_initial_moles()));
|
|
1432
|
+
}
|
|
1433
|
+
if (x[j]->moles <= 0.0)
|
|
1434
|
+
{
|
|
1435
|
+
for (k = 0; k < 11; k++)
|
|
1436
|
+
{
|
|
1437
|
+
token[13 + k] = ' ';
|
|
1438
|
+
}
|
|
1439
|
+
}
|
|
1440
|
+
if (comp_ptr->Get_add_formula().size() == 0)
|
|
1441
|
+
{
|
|
1442
|
+
output_msg(sformatf("%37s\n", token));
|
|
1443
|
+
}
|
|
1444
|
+
else
|
|
1445
|
+
{
|
|
1446
|
+
output_msg(sformatf("\n %-18s%-15s%36s\n",
|
|
1447
|
+
comp_ptr->Get_add_formula().c_str(), " is reactant", token));
|
|
1448
|
+
}
|
|
1449
|
+
}
|
|
1450
|
+
output_msg("\n");
|
|
1451
|
+
return (OK);
|
|
1452
|
+
}
|
|
1453
|
+
|
|
1454
|
+
/* ---------------------------------------------------------------------- */
|
|
1455
|
+
int Phreeqc::
|
|
1456
|
+
print_species(void)
|
|
1457
|
+
/* ---------------------------------------------------------------------- */
|
|
1458
|
+
{
|
|
1459
|
+
/*
|
|
1460
|
+
* Prints description of solution, uses array species_list for
|
|
1461
|
+
* order of aqueous species.
|
|
1462
|
+
*/
|
|
1463
|
+
int i;
|
|
1464
|
+
const char *name, *name1;
|
|
1465
|
+
class master *master_ptr;
|
|
1466
|
+
LDBLE min;
|
|
1467
|
+
LDBLE lm;
|
|
1468
|
+
|
|
1469
|
+
if (pr.species == FALSE || pr.all == FALSE)
|
|
1470
|
+
return (OK);
|
|
1471
|
+
min = -1000;
|
|
1472
|
+
print_centered("Distribution of species");
|
|
1473
|
+
/*
|
|
1474
|
+
* Heading for species
|
|
1475
|
+
*/
|
|
1476
|
+
if (pitzer_model == TRUE)
|
|
1477
|
+
{
|
|
1478
|
+
if (ICON == TRUE)
|
|
1479
|
+
{
|
|
1480
|
+
output_msg(sformatf("%60s%10s\n", "MacInnes", "MacInnes"));
|
|
1481
|
+
output_msg(sformatf("%40s%10s%10s%10s%10s\n",
|
|
1482
|
+
"MacInnes", "Log", "Log", "Log", "mole V"));
|
|
1483
|
+
}
|
|
1484
|
+
else
|
|
1485
|
+
{
|
|
1486
|
+
output_msg(sformatf("%60s%10s\n", "Unscaled", "Unscaled"));
|
|
1487
|
+
output_msg(sformatf("%40s%10s%10s%10s%10s\n",
|
|
1488
|
+
"Unscaled", "Log", "Log", "Log", "mole V"));
|
|
1489
|
+
}
|
|
1490
|
+
}
|
|
1491
|
+
else
|
|
1492
|
+
{
|
|
1493
|
+
output_msg(sformatf("%50s%10s%10s%10s\n", "Log", "Log", "Log", "mole V"));
|
|
1494
|
+
}
|
|
1495
|
+
#ifdef NO_UTF8_ENCODING
|
|
1496
|
+
output_msg(sformatf(" %-13s%12s%12s%10s%10s%10s%10s\n\n", "Species",
|
|
1497
|
+
"Molality", "Activity", "Molality", "Activity", "Gamma", "cm3/mol"));
|
|
1498
|
+
#else
|
|
1499
|
+
output_msg(sformatf(" %-13s%12s%12s%10s%10s%10s%11s\n\n", "Species",
|
|
1500
|
+
"Molality", "Activity", "Molality", "Activity", "Gamma", "cm³/mol"));
|
|
1501
|
+
#endif
|
|
1502
|
+
/*
|
|
1503
|
+
* Print list of species
|
|
1504
|
+
*/
|
|
1505
|
+
s_h2o->lm = s_h2o->la;
|
|
1506
|
+
name = s_hplus->secondary->elt->name;
|
|
1507
|
+
for (i = 0; i < (int)species_list.size(); i++)
|
|
1508
|
+
{
|
|
1509
|
+
/*
|
|
1510
|
+
* Get name of master species
|
|
1511
|
+
*/
|
|
1512
|
+
if (species_list[i].s->type == EX)
|
|
1513
|
+
continue;
|
|
1514
|
+
if (species_list[i].s->type == SURF)
|
|
1515
|
+
continue;
|
|
1516
|
+
if (species_list[i].master_s->secondary != NULL)
|
|
1517
|
+
{
|
|
1518
|
+
master_ptr = species_list[i].master_s->secondary;
|
|
1519
|
+
name1 = species_list[i].master_s->secondary->elt->name;
|
|
1520
|
+
}
|
|
1521
|
+
else
|
|
1522
|
+
{
|
|
1523
|
+
master_ptr = species_list[i].master_s->primary;
|
|
1524
|
+
name1 = species_list[i].master_s->primary->elt->name;
|
|
1525
|
+
}
|
|
1526
|
+
/*
|
|
1527
|
+
* Check if new master species, print total molality
|
|
1528
|
+
*/
|
|
1529
|
+
if (name1 != name)
|
|
1530
|
+
{
|
|
1531
|
+
name = name1;
|
|
1532
|
+
output_msg(sformatf("%-11s%12.3e\n", name,
|
|
1533
|
+
(double) (master_ptr->total / mass_water_aq_x)));
|
|
1534
|
+
min = censor * master_ptr->total / mass_water_aq_x;
|
|
1535
|
+
if (min > 0)
|
|
1536
|
+
{
|
|
1537
|
+
min = log10(min);
|
|
1538
|
+
}
|
|
1539
|
+
else
|
|
1540
|
+
{
|
|
1541
|
+
min = -1000.;
|
|
1542
|
+
}
|
|
1543
|
+
}
|
|
1544
|
+
/*
|
|
1545
|
+
* Print species data
|
|
1546
|
+
*/
|
|
1547
|
+
if (species_list[i].s->lm > min)
|
|
1548
|
+
{
|
|
1549
|
+
if (species_list[i].s == s_h2o)
|
|
1550
|
+
{
|
|
1551
|
+
lm = log10(s_h2o->moles / mass_water_aq_x);
|
|
1552
|
+
}
|
|
1553
|
+
else
|
|
1554
|
+
{
|
|
1555
|
+
lm = species_list[i].s->lm;
|
|
1556
|
+
}
|
|
1557
|
+
output_msg(sformatf(
|
|
1558
|
+
" %-13s%12.3e%12.3e%10.3f%10.3f%10.3f",
|
|
1559
|
+
species_list[i].s->name,
|
|
1560
|
+
(double) ((species_list[i].s->moles) /
|
|
1561
|
+
mass_water_aq_x),
|
|
1562
|
+
(double) under(species_list[i].s->lm +
|
|
1563
|
+
species_list[i].s->lg), (double) lm,
|
|
1564
|
+
(double) (species_list[i].s->lm +
|
|
1565
|
+
species_list[i].s->lg),
|
|
1566
|
+
(double) species_list[i].s->lg));
|
|
1567
|
+
//if (species_list[i].s->logk[vm_tc] || !strcmp(species_list[i].s->name, "H+"))
|
|
1568
|
+
if (species_list[i].s->logk[vm_tc] || species_list[i].s == s_hplus)
|
|
1569
|
+
output_msg(sformatf("%10.2f\n",
|
|
1570
|
+
(double) species_list[i].s->logk[vm_tc]));
|
|
1571
|
+
else
|
|
1572
|
+
output_msg(sformatf(" (0) \n"));
|
|
1573
|
+
}
|
|
1574
|
+
}
|
|
1575
|
+
output_msg(sformatf("\n"));
|
|
1576
|
+
return (OK);
|
|
1577
|
+
}
|
|
1578
|
+
/* ---------------------------------------------------------------------- */
|
|
1579
|
+
int Phreeqc::
|
|
1580
|
+
print_surface(void)
|
|
1581
|
+
/* ---------------------------------------------------------------------- */
|
|
1582
|
+
{
|
|
1583
|
+
/*
|
|
1584
|
+
* Prints description of surface, including charge and potential,
|
|
1585
|
+
* grams and specific area, moles of each species on surface sites,
|
|
1586
|
+
* and description of diffuse layer if applicable.
|
|
1587
|
+
*/
|
|
1588
|
+
cxxSurface *surface_ptr;
|
|
1589
|
+
std::string name, token;
|
|
1590
|
+
class master *master_ptr;
|
|
1591
|
+
LDBLE molfrac, charge;
|
|
1592
|
+
/*
|
|
1593
|
+
* Print surface speciation
|
|
1594
|
+
*/
|
|
1595
|
+
surface_ptr = use.Get_surface_ptr();
|
|
1596
|
+
if (surface_ptr == NULL || pr.surface == FALSE || pr.all == FALSE)
|
|
1597
|
+
return (OK);
|
|
1598
|
+
if (surface_ptr->Get_type() == cxxSurface::CD_MUSIC)
|
|
1599
|
+
return (print_surface_cd_music());
|
|
1600
|
+
|
|
1601
|
+
if (state >= REACTION)
|
|
1602
|
+
{
|
|
1603
|
+
print_centered("Surface composition");
|
|
1604
|
+
}
|
|
1605
|
+
/*
|
|
1606
|
+
* Print list of species
|
|
1607
|
+
*/
|
|
1608
|
+
|
|
1609
|
+
s_h2o->lm = s_h2o->la;
|
|
1610
|
+
if (use.Get_surface_ptr()->Get_type() == cxxSurface::DDL)
|
|
1611
|
+
{
|
|
1612
|
+
output_msg(sformatf("%-14s\n", "Diffuse Double Layer Surface-Complexation Model\n"));
|
|
1613
|
+
}
|
|
1614
|
+
else if (use.Get_surface_ptr()->Get_type() == cxxSurface::CCM)
|
|
1615
|
+
{
|
|
1616
|
+
output_msg(sformatf("%-14s\n", "Constant Capacitance Surface-Complexation Model\n"));
|
|
1617
|
+
}
|
|
1618
|
+
for (int j = 0; j < count_unknowns; j++)
|
|
1619
|
+
{
|
|
1620
|
+
/*if (use.Get_surface_ptr()->edl == TRUE) { */
|
|
1621
|
+
if (use.Get_surface_ptr()->Get_type() == cxxSurface::DDL || use.Get_surface_ptr()->Get_type() == cxxSurface::CCM)
|
|
1622
|
+
{
|
|
1623
|
+
if (x[j]->type != SURFACE_CB)
|
|
1624
|
+
continue;
|
|
1625
|
+
name = x[j]->master[0]->elt->name;
|
|
1626
|
+
Utilities::replace("_psi", "", name);
|
|
1627
|
+
}
|
|
1628
|
+
else
|
|
1629
|
+
{
|
|
1630
|
+
if (x[j]->type != SURFACE)
|
|
1631
|
+
continue;
|
|
1632
|
+
token = x[j]->master[0]->elt->name;
|
|
1633
|
+
Utilities::replace("_", " ", token);
|
|
1634
|
+
std::string::iterator b = token.begin();
|
|
1635
|
+
std::string::iterator e = token.end();
|
|
1636
|
+
CParser::copy_token(name, b, e);
|
|
1637
|
+
}
|
|
1638
|
+
output_msg(sformatf("%-14s\n", name.c_str()));
|
|
1639
|
+
/*
|
|
1640
|
+
* Description of surface
|
|
1641
|
+
*/
|
|
1642
|
+
if (dl_type_x != cxxSurface::NO_DL)
|
|
1643
|
+
{
|
|
1644
|
+
output_msg(sformatf(
|
|
1645
|
+
"\t%11.3e Surface + diffuse layer charge, eq\n",
|
|
1646
|
+
(double) x[j]->f));
|
|
1647
|
+
}
|
|
1648
|
+
/*if (use.Get_surface_ptr()->edl == TRUE && diffuse_layer_x == FALSE) { */
|
|
1649
|
+
if ((use.Get_surface_ptr()->Get_type() == cxxSurface::DDL || use.Get_surface_ptr()->Get_type() == cxxSurface::CCM) && dl_type_x == cxxSurface::NO_DL)
|
|
1650
|
+
{
|
|
1651
|
+
charge = x[j]->f;
|
|
1652
|
+
}
|
|
1653
|
+
else
|
|
1654
|
+
{
|
|
1655
|
+
charge = calc_surface_charge(name.c_str());
|
|
1656
|
+
}
|
|
1657
|
+
output_msg(sformatf("\t%11.3e Surface charge, eq\n",
|
|
1658
|
+
(double) charge));
|
|
1659
|
+
if (x[j]->type == SURFACE_CB)
|
|
1660
|
+
{
|
|
1661
|
+
cxxSurfaceCharge * charge_ptr = use.Get_surface_ptr()->Find_charge(x[j]->surface_charge);
|
|
1662
|
+
if ((charge_ptr->Get_specific_area() *
|
|
1663
|
+
charge_ptr->Get_grams()) > 0)
|
|
1664
|
+
{
|
|
1665
|
+
#ifdef NO_UTF8_ENCODING
|
|
1666
|
+
output_msg(sformatf("\t%11.3e sigma, C/m2\n",
|
|
1667
|
+
#else
|
|
1668
|
+
output_msg(sformatf("\t%11.3e sigma, C/m²\n",
|
|
1669
|
+
#endif
|
|
1670
|
+
(double) (charge * F_C_MOL /
|
|
1671
|
+
(charge_ptr->Get_specific_area() *
|
|
1672
|
+
charge_ptr->Get_grams()))));
|
|
1673
|
+
}
|
|
1674
|
+
else
|
|
1675
|
+
{
|
|
1676
|
+
#ifdef NO_UTF8_ENCODING
|
|
1677
|
+
output_msg(sformatf("\tundefined sigma, C/m2\n"));
|
|
1678
|
+
#else
|
|
1679
|
+
output_msg(sformatf("\tundefined sigma, C/m²\n"));
|
|
1680
|
+
#endif
|
|
1681
|
+
}
|
|
1682
|
+
if (use.Get_surface_ptr()->Get_type() == cxxSurface::CCM)
|
|
1683
|
+
{
|
|
1684
|
+
output_msg(sformatf("\t%11.3e capacitance, F/m^2\n",
|
|
1685
|
+
(double) (charge_ptr->Get_capacitance0())));
|
|
1686
|
+
}
|
|
1687
|
+
output_msg(sformatf("\t%11.3e psi, V\n",
|
|
1688
|
+
(double) (x[j]->master[0]->s->la * 2 * R_KJ_DEG_MOL *
|
|
1689
|
+
tk_x * LOG_10 / F_KJ_V_EQ)));
|
|
1690
|
+
output_msg(sformatf("\t%11.3e -F*psi/RT\n",
|
|
1691
|
+
(double) (x[j]->master[0]->s->la * (-2) * LOG_10)));
|
|
1692
|
+
output_msg(sformatf("\t%11.3e exp(-F*psi/RT)\n",
|
|
1693
|
+
exp(x[j]->master[0]->s->la * (-2) * LOG_10)));
|
|
1694
|
+
cxxSurfaceComp * comp_ptr = surface_ptr->Find_comp(x[j]->surface_comp);
|
|
1695
|
+
if (comp_ptr->Get_phase_name().size() > 0)
|
|
1696
|
+
{
|
|
1697
|
+
output_msg(sformatf(
|
|
1698
|
+
#ifdef NO_UTF8_ENCODING
|
|
1699
|
+
"\t%11.3e specific area, m2/mol %s\n",
|
|
1700
|
+
#else
|
|
1701
|
+
"\t%11.3e specific area, m²/mol %s\n",
|
|
1702
|
+
#endif
|
|
1703
|
+
(double) charge_ptr->Get_specific_area(),
|
|
1704
|
+
comp_ptr->Get_phase_name().c_str()));
|
|
1705
|
+
output_msg(sformatf(
|
|
1706
|
+
#ifdef NO_UTF8_ENCODING
|
|
1707
|
+
"\t%11.3e m2 for %11.3e moles of %s\n\n",
|
|
1708
|
+
#else
|
|
1709
|
+
"\t%11.3e m² for %11.3e moles of %s\n\n",
|
|
1710
|
+
#endif
|
|
1711
|
+
(double) (charge_ptr->Get_grams() *
|
|
1712
|
+
charge_ptr->Get_specific_area()),
|
|
1713
|
+
(double) charge_ptr->Get_grams(),
|
|
1714
|
+
comp_ptr->Get_phase_name().c_str()));
|
|
1715
|
+
}
|
|
1716
|
+
else if (comp_ptr->Get_rate_name().size() > 0)
|
|
1717
|
+
{
|
|
1718
|
+
output_msg(sformatf(
|
|
1719
|
+
#ifdef NO_UTF8_ENCODING
|
|
1720
|
+
"\t%11.3e specific area, m2/mol %s\n",
|
|
1721
|
+
#else
|
|
1722
|
+
"\t%11.3e specific area, m²/mol %s\n",
|
|
1723
|
+
#endif
|
|
1724
|
+
(double) charge_ptr->Get_specific_area(),
|
|
1725
|
+
comp_ptr->Get_rate_name().c_str()));
|
|
1726
|
+
output_msg(sformatf(
|
|
1727
|
+
#ifdef NO_UTF8_ENCODING
|
|
1728
|
+
"\t%11.3e m2 for %11.3e moles of %s\n\n",
|
|
1729
|
+
#else
|
|
1730
|
+
"\t%11.3e m² for %11.3e moles of %s\n\n",
|
|
1731
|
+
#endif
|
|
1732
|
+
(double) (charge_ptr->Get_grams() *
|
|
1733
|
+
charge_ptr->Get_specific_area()),
|
|
1734
|
+
(double) charge_ptr->Get_grams(),
|
|
1735
|
+
comp_ptr->Get_rate_name().c_str()));
|
|
1736
|
+
}
|
|
1737
|
+
else
|
|
1738
|
+
{
|
|
1739
|
+
output_msg(sformatf(
|
|
1740
|
+
#ifdef NO_UTF8_ENCODING
|
|
1741
|
+
"\t%11.3e specific area, m2/g\n",
|
|
1742
|
+
#else
|
|
1743
|
+
"\t%11.3e specific area, m²/g\n",
|
|
1744
|
+
#endif
|
|
1745
|
+
(double) charge_ptr->Get_specific_area()));
|
|
1746
|
+
#ifdef NO_UTF8_ENCODING
|
|
1747
|
+
output_msg(sformatf("\t%11.3e m2 for %11.3e g\n\n",
|
|
1748
|
+
#else
|
|
1749
|
+
output_msg(sformatf("\t%11.3e m² for %11.3e g\n\n",
|
|
1750
|
+
#endif
|
|
1751
|
+
(double) (charge_ptr->Get_specific_area() *
|
|
1752
|
+
charge_ptr->Get_grams()),
|
|
1753
|
+
(double) charge_ptr->Get_grams()));
|
|
1754
|
+
}
|
|
1755
|
+
if (dl_type_x != cxxSurface::NO_DL)
|
|
1756
|
+
print_diffuse_layer(charge_ptr);
|
|
1757
|
+
output_msg(sformatf("\n"));
|
|
1758
|
+
/*
|
|
1759
|
+
* Heading for species
|
|
1760
|
+
*/
|
|
1761
|
+
for (int k = j - 1; k < count_unknowns; k++)
|
|
1762
|
+
{
|
|
1763
|
+
if (x[k]->type != SURFACE)
|
|
1764
|
+
continue;
|
|
1765
|
+
if (x[j] != x[k]->potential_unknown)
|
|
1766
|
+
continue;
|
|
1767
|
+
master_ptr = x[k]->master[0];
|
|
1768
|
+
output_msg(sformatf("%-14s\n",
|
|
1769
|
+
x[k]->master[0]->elt->name));
|
|
1770
|
+
output_msg(sformatf("\t%11.3e moles",
|
|
1771
|
+
(double) x[k]->moles));
|
|
1772
|
+
cxxSurfaceComp * comp_k_ptr = surface_ptr->Find_comp(x[k]->surface_comp);
|
|
1773
|
+
if (comp_k_ptr->Get_phase_name().size() > 0)
|
|
1774
|
+
{
|
|
1775
|
+
output_msg(sformatf("\t[%g mol/(mol %s)]\n",
|
|
1776
|
+
(double) comp_k_ptr->Get_phase_proportion(),
|
|
1777
|
+
comp_k_ptr->Get_phase_name().c_str()));
|
|
1778
|
+
}
|
|
1779
|
+
else if (comp_k_ptr->Get_rate_name().size() > 0)
|
|
1780
|
+
{
|
|
1781
|
+
output_msg(sformatf(
|
|
1782
|
+
"\t[%g mol/(mol kinetic reactant %s)]\n",
|
|
1783
|
+
(double) comp_k_ptr->Get_phase_proportion(),
|
|
1784
|
+
comp_k_ptr->Get_rate_name().c_str()));
|
|
1785
|
+
}
|
|
1786
|
+
else
|
|
1787
|
+
{
|
|
1788
|
+
output_msg(sformatf("\n"));
|
|
1789
|
+
}
|
|
1790
|
+
output_msg(sformatf("\t%-15s%12s%12s%12s%12s\n", " ",
|
|
1791
|
+
" ", "Mole", " ", "Log"));
|
|
1792
|
+
output_msg(sformatf("\t%-15s%12s%12s%12s%12s\n\n",
|
|
1793
|
+
"Species", "Moles", "Fraction", "Molality",
|
|
1794
|
+
"Molality"));
|
|
1795
|
+
for (int i = 0; i < (int)species_list.size(); i++)
|
|
1796
|
+
{
|
|
1797
|
+
if (species_list[i].master_s != master_ptr->s)
|
|
1798
|
+
continue;
|
|
1799
|
+
/*
|
|
1800
|
+
* Print species data
|
|
1801
|
+
*/
|
|
1802
|
+
if (x[k]->moles >= MIN_RELATED_SURFACE)
|
|
1803
|
+
{
|
|
1804
|
+
molfrac =
|
|
1805
|
+
(LDBLE) (species_list[i].s->moles) / x[k]->moles *
|
|
1806
|
+
species_list[i].s->equiv;
|
|
1807
|
+
}
|
|
1808
|
+
else
|
|
1809
|
+
{
|
|
1810
|
+
molfrac = 0.0;
|
|
1811
|
+
}
|
|
1812
|
+
output_msg(sformatf(
|
|
1813
|
+
"\t%-15s%12.3e%12.3f%12.3e%12.3f\n",
|
|
1814
|
+
species_list[i].s->name,
|
|
1815
|
+
(double) species_list[i].s->moles,
|
|
1816
|
+
(double) molfrac,
|
|
1817
|
+
(double) (species_list[i].s->moles /
|
|
1818
|
+
mass_water_aq_x),
|
|
1819
|
+
log10(species_list[i].s->moles /
|
|
1820
|
+
mass_water_aq_x)));
|
|
1821
|
+
}
|
|
1822
|
+
output_msg(sformatf("\n"));
|
|
1823
|
+
}
|
|
1824
|
+
}
|
|
1825
|
+
else
|
|
1826
|
+
{
|
|
1827
|
+
int k = j;
|
|
1828
|
+
master_ptr = x[k]->master[0];
|
|
1829
|
+
output_msg(sformatf("%-14s\n", x[k]->master[0]->elt->name));
|
|
1830
|
+
output_msg(sformatf("\t%11.3e moles\n",
|
|
1831
|
+
(double) x[k]->moles));
|
|
1832
|
+
output_msg(sformatf("\t%-15s%12s%12s%12s%12s\n", " ", " ",
|
|
1833
|
+
"Mole", " ", "Log"));
|
|
1834
|
+
output_msg(sformatf("\t%-15s%12s%12s%12s%12s\n\n",
|
|
1835
|
+
"Species", "Moles", "Fraction", "Molality",
|
|
1836
|
+
"Molality"));
|
|
1837
|
+
for (int i = 0; i < (int)species_list.size(); i++)
|
|
1838
|
+
{
|
|
1839
|
+
if (species_list[i].master_s != master_ptr->s)
|
|
1840
|
+
continue;
|
|
1841
|
+
/*
|
|
1842
|
+
* Print species data
|
|
1843
|
+
*/
|
|
1844
|
+
if (x[k]->moles >= MIN_RELATED_SURFACE)
|
|
1845
|
+
{
|
|
1846
|
+
molfrac =
|
|
1847
|
+
(double) (species_list[i].s->moles) / x[k]->moles *
|
|
1848
|
+
species_list[i].s->equiv;
|
|
1849
|
+
}
|
|
1850
|
+
else
|
|
1851
|
+
{
|
|
1852
|
+
molfrac = 0.0;
|
|
1853
|
+
}
|
|
1854
|
+
output_msg(sformatf(
|
|
1855
|
+
"\t%-15s%12.3e%12.3f%12.3e%12.3f\n",
|
|
1856
|
+
species_list[i].s->name,
|
|
1857
|
+
(double) species_list[i].s->moles,
|
|
1858
|
+
(double) molfrac,
|
|
1859
|
+
(double) (species_list[i].s->moles /
|
|
1860
|
+
mass_water_aq_x),
|
|
1861
|
+
log10(species_list[i].s->moles / mass_water_aq_x)));
|
|
1862
|
+
}
|
|
1863
|
+
output_msg(sformatf("\n"));
|
|
1864
|
+
}
|
|
1865
|
+
}
|
|
1866
|
+
return (OK);
|
|
1867
|
+
}
|
|
1868
|
+
|
|
1869
|
+
/* ---------------------------------------------------------------------- */
|
|
1870
|
+
int Phreeqc::
|
|
1871
|
+
print_surface_cd_music(void)
|
|
1872
|
+
/* ---------------------------------------------------------------------- */
|
|
1873
|
+
{
|
|
1874
|
+
/*
|
|
1875
|
+
* Prints description of cd music surfaces, including charge and potential,
|
|
1876
|
+
* grams and specific area, moles of each species on surface sites,
|
|
1877
|
+
* and description of diffuse layer if applicable.
|
|
1878
|
+
*/
|
|
1879
|
+
cxxSurface *surface_ptr;
|
|
1880
|
+
std::string name;
|
|
1881
|
+
class master *master_ptr, *master_ptr0, *master_ptr1, *master_ptr2;
|
|
1882
|
+
class unknown *unknown_ptr0, *unknown_ptr1, *unknown_ptr2;
|
|
1883
|
+
LDBLE molfrac, charge0, charge1, charge2, sum;
|
|
1884
|
+
/*
|
|
1885
|
+
* Print surface speciation
|
|
1886
|
+
*/
|
|
1887
|
+
surface_ptr = use.Get_surface_ptr();
|
|
1888
|
+
if (surface_ptr == NULL || pr.surface == FALSE || pr.all == FALSE)
|
|
1889
|
+
return (OK);
|
|
1890
|
+
|
|
1891
|
+
if (state >= REACTION)
|
|
1892
|
+
{
|
|
1893
|
+
print_centered("Surface composition");
|
|
1894
|
+
}
|
|
1895
|
+
/*
|
|
1896
|
+
* Print list of species
|
|
1897
|
+
*/
|
|
1898
|
+
|
|
1899
|
+
s_h2o->lm = s_h2o->la;
|
|
1900
|
+
for (int j = 0; j < count_unknowns; j++)
|
|
1901
|
+
{
|
|
1902
|
+
if (x[j]->type != SURFACE_CB)
|
|
1903
|
+
continue;
|
|
1904
|
+
name = x[j]->master[0]->elt->name;
|
|
1905
|
+
Utilities::replace("_psi", "", name);
|
|
1906
|
+
output_msg(sformatf("%-14s\n", name.c_str()));
|
|
1907
|
+
cxxSurfaceCharge * charge_ptr = use.Get_surface_ptr()->Find_charge(x[j]->surface_charge);
|
|
1908
|
+
/*
|
|
1909
|
+
* Description of surface
|
|
1910
|
+
*/
|
|
1911
|
+
if (dl_type_x != cxxSurface::NO_DL)
|
|
1912
|
+
{
|
|
1913
|
+
output_msg(sformatf("\t%11.3e Surface + diffuse layer charge, eq\n\n",
|
|
1914
|
+
(double)(x[(size_t)j + 2]->f + (charge_ptr->Get_sigma0() + charge_ptr->Get_sigma1()) * (charge_ptr->Get_specific_area() * charge_ptr->Get_grams()) / F_C_MOL)));
|
|
1915
|
+
}
|
|
1916
|
+
master_ptr0 =
|
|
1917
|
+
surface_get_psi_master(charge_ptr->Get_name().c_str(), SURF_PSI);
|
|
1918
|
+
master_ptr1 =
|
|
1919
|
+
surface_get_psi_master(charge_ptr->Get_name().c_str(), SURF_PSI1);
|
|
1920
|
+
master_ptr2 =
|
|
1921
|
+
surface_get_psi_master(charge_ptr->Get_name().c_str(), SURF_PSI2);
|
|
1922
|
+
unknown_ptr0 = x[master_ptr0->unknown->number];
|
|
1923
|
+
unknown_ptr1 = x[master_ptr1->unknown->number];
|
|
1924
|
+
unknown_ptr2 = x[master_ptr2->unknown->number];
|
|
1925
|
+
|
|
1926
|
+
charge0 = unknown_ptr0->f;
|
|
1927
|
+
charge1 = unknown_ptr1->f;
|
|
1928
|
+
if (dl_type_x != cxxSurface::NO_DL)
|
|
1929
|
+
{
|
|
1930
|
+
charge2 =
|
|
1931
|
+
charge_ptr->Get_sigma2() *
|
|
1932
|
+
(charge_ptr->Get_specific_area() *
|
|
1933
|
+
charge_ptr->Get_grams()) / F_C_MOL;
|
|
1934
|
+
}
|
|
1935
|
+
else
|
|
1936
|
+
{
|
|
1937
|
+
charge2 = unknown_ptr2->f;
|
|
1938
|
+
}
|
|
1939
|
+
sum = 0;
|
|
1940
|
+
for (size_t k = 0; k < x[j]->comp_unknowns.size(); k++)
|
|
1941
|
+
{
|
|
1942
|
+
sum +=
|
|
1943
|
+
x[j]->comp_unknowns[k]->moles *
|
|
1944
|
+
x[j]->comp_unknowns[k]->master[0]->s->z;
|
|
1945
|
+
}
|
|
1946
|
+
output_msg(sformatf("\t%11.3e Surface charge, plane 0, eq\n",
|
|
1947
|
+
(double) (charge0 + sum)));
|
|
1948
|
+
output_msg(sformatf("\t%11.3e Surface charge, plane 1, eq\n",
|
|
1949
|
+
(double) charge1));
|
|
1950
|
+
output_msg(sformatf("\t%11.3e Surface charge, plane 2, eq\n",
|
|
1951
|
+
(double) charge2));
|
|
1952
|
+
output_msg(sformatf(
|
|
1953
|
+
"\t%11.3e Sum of surface charge, all planes, eq\n\n",
|
|
1954
|
+
(double) (charge0 + sum + charge1 + charge2)));
|
|
1955
|
+
if (x[j]->type == SURFACE_CB)
|
|
1956
|
+
{
|
|
1957
|
+
if ((charge_ptr->Get_specific_area() *
|
|
1958
|
+
charge_ptr->Get_grams()) > 0)
|
|
1959
|
+
{
|
|
1960
|
+
output_msg(sformatf(
|
|
1961
|
+
#ifdef NO_UTF8_ENCODING
|
|
1962
|
+
"\t%11.3e sigma, plane 0, C/m2\n",
|
|
1963
|
+
#else
|
|
1964
|
+
"\t%11.3e sigma, plane 0, C/m²\n",
|
|
1965
|
+
#endif
|
|
1966
|
+
(double) charge_ptr->Get_sigma0()));
|
|
1967
|
+
output_msg(sformatf(
|
|
1968
|
+
#ifdef NO_UTF8_ENCODING
|
|
1969
|
+
"\t%11.3e sigma, plane 1, C/m2\n",
|
|
1970
|
+
#else
|
|
1971
|
+
"\t%11.3e sigma, plane 1, C/m²\n",
|
|
1972
|
+
#endif
|
|
1973
|
+
(double) charge_ptr->Get_sigma1()));
|
|
1974
|
+
output_msg(sformatf(
|
|
1975
|
+
#ifdef NO_UTF8_ENCODING
|
|
1976
|
+
"\t%11.3e sigma, plane 2, C/m2\n",
|
|
1977
|
+
#else
|
|
1978
|
+
"\t%11.3e sigma, plane 2, C/m²\n",
|
|
1979
|
+
#endif
|
|
1980
|
+
(double) charge_ptr->Get_sigma2()));
|
|
1981
|
+
output_msg(sformatf(
|
|
1982
|
+
#ifdef NO_UTF8_ENCODING
|
|
1983
|
+
"\t%11.3e sigma, diffuse layer, C/m2\n\n",
|
|
1984
|
+
#else
|
|
1985
|
+
"\t%11.3e sigma, diffuse layer, C/m²\n\n",
|
|
1986
|
+
#endif
|
|
1987
|
+
(double) charge_ptr->Get_sigmaddl()));
|
|
1988
|
+
}
|
|
1989
|
+
else
|
|
1990
|
+
{
|
|
1991
|
+
#ifdef NO_UTF8_ENCODING
|
|
1992
|
+
output_msg(sformatf("\tundefined sigma, C/m2\n"));
|
|
1993
|
+
#else
|
|
1994
|
+
output_msg(sformatf("\tundefined sigma, C/m²\n"));
|
|
1995
|
+
#endif
|
|
1996
|
+
}
|
|
1997
|
+
output_msg(sformatf("\t%11.3e psi, plane 0, V\n",
|
|
1998
|
+
(double) (-master_ptr0->s->la * LOG_10 * R_KJ_DEG_MOL * tk_x / F_KJ_V_EQ)));
|
|
1999
|
+
output_msg(sformatf("\t%11.3e psi, plane 1, V\n",
|
|
2000
|
+
(double) (-master_ptr1->s->la * LOG_10 * R_KJ_DEG_MOL * tk_x / F_KJ_V_EQ)));
|
|
2001
|
+
output_msg(sformatf("\t%11.3e psi, plane 2, V\n\n",
|
|
2002
|
+
(double) (-master_ptr2->s->la * LOG_10 * R_KJ_DEG_MOL * tk_x / F_KJ_V_EQ)));
|
|
2003
|
+
output_msg(sformatf("\t%11.3e exp(-F*psi/RT), plane 0\n",
|
|
2004
|
+
(double) (exp(master_ptr0->s->la * LOG_10))));
|
|
2005
|
+
output_msg(sformatf("\t%11.3e exp(-F*psi/RT), plane 1\n",
|
|
2006
|
+
(double) (exp(master_ptr1->s->la * LOG_10))));
|
|
2007
|
+
output_msg(sformatf(
|
|
2008
|
+
"\t%11.3e exp(-F*psi/RT), plane 2\n\n",
|
|
2009
|
+
(double) (exp(master_ptr2->s->la * LOG_10))));
|
|
2010
|
+
|
|
2011
|
+
output_msg(sformatf("\t%11.3e capacitance 0-1, F/m^2\n",
|
|
2012
|
+
(double) (charge_ptr->Get_capacitance0())));
|
|
2013
|
+
output_msg(sformatf("\t%11.3e capacitance 1-2, F/m^2\n",
|
|
2014
|
+
(double) (charge_ptr->Get_capacitance1())));
|
|
2015
|
+
cxxSurfaceComp * comp_ptr = surface_ptr->Find_comp(x[j]->surface_comp);
|
|
2016
|
+
if (comp_ptr->Get_phase_name().size() > 0)
|
|
2017
|
+
{
|
|
2018
|
+
output_msg(sformatf(
|
|
2019
|
+
"\t%11.3e specific area, m^2/mol %s\n",
|
|
2020
|
+
(double) charge_ptr->Get_specific_area(),
|
|
2021
|
+
comp_ptr->Get_phase_name().c_str()));
|
|
2022
|
+
output_msg(sformatf(
|
|
2023
|
+
"\t%11.3e m^2 for %11.3e moles of %s\n\n",
|
|
2024
|
+
(double) (charge_ptr->Get_grams() *
|
|
2025
|
+
charge_ptr->Get_specific_area()),
|
|
2026
|
+
(double) charge_ptr->Get_grams(),
|
|
2027
|
+
comp_ptr->Get_phase_name().c_str()));
|
|
2028
|
+
}
|
|
2029
|
+
else if (comp_ptr->Get_rate_name().size() > 0)
|
|
2030
|
+
{
|
|
2031
|
+
output_msg(sformatf(
|
|
2032
|
+
"\t%11.3e specific area, m^2/mol %s\n",
|
|
2033
|
+
(double) charge_ptr->Get_specific_area(),
|
|
2034
|
+
comp_ptr->Get_rate_name().c_str()));
|
|
2035
|
+
output_msg(sformatf(
|
|
2036
|
+
"\t%11.3e m^2 for %11.3e moles of %s\n\n",
|
|
2037
|
+
(double) (charge_ptr->Get_grams() *
|
|
2038
|
+
charge_ptr->Get_specific_area()),
|
|
2039
|
+
(double) charge_ptr->Get_grams(),
|
|
2040
|
+
comp_ptr->Get_rate_name().c_str()));
|
|
2041
|
+
}
|
|
2042
|
+
else
|
|
2043
|
+
{
|
|
2044
|
+
output_msg(sformatf(
|
|
2045
|
+
"\t%11.3e specific area, m^2/g\n",
|
|
2046
|
+
(double) charge_ptr->Get_specific_area()));
|
|
2047
|
+
output_msg(sformatf("\t%11.3e m^2 for %11.3e g\n\n",
|
|
2048
|
+
(double) (charge_ptr->Get_specific_area() *
|
|
2049
|
+
charge_ptr->Get_grams()),
|
|
2050
|
+
(double) charge_ptr->Get_grams()));
|
|
2051
|
+
}
|
|
2052
|
+
if (dl_type_x != cxxSurface::NO_DL)
|
|
2053
|
+
print_diffuse_layer(charge_ptr);
|
|
2054
|
+
output_msg(sformatf("\n"));
|
|
2055
|
+
/*
|
|
2056
|
+
* Heading for species
|
|
2057
|
+
*/
|
|
2058
|
+
for (int k = j - 1; k < count_unknowns; k++)
|
|
2059
|
+
{
|
|
2060
|
+
if (x[k]->type != SURFACE)
|
|
2061
|
+
continue;
|
|
2062
|
+
if (x[j] != x[k]->potential_unknown)
|
|
2063
|
+
continue;
|
|
2064
|
+
master_ptr = x[k]->master[0];
|
|
2065
|
+
output_msg(sformatf("%-14s\n",
|
|
2066
|
+
x[k]->master[0]->elt->name));
|
|
2067
|
+
output_msg(sformatf("\t%11.3e moles",
|
|
2068
|
+
(double) x[k]->moles));
|
|
2069
|
+
cxxSurfaceComp * comp_k_ptr = surface_ptr->Find_comp(x[k]->surface_comp);
|
|
2070
|
+
if (comp_k_ptr->Get_phase_name().size() > 0)
|
|
2071
|
+
{
|
|
2072
|
+
output_msg(sformatf("\t[%g mol/(mol %s)]\n",
|
|
2073
|
+
(double) comp_k_ptr->Get_phase_proportion(),
|
|
2074
|
+
comp_k_ptr->Get_phase_name().c_str()));
|
|
2075
|
+
}
|
|
2076
|
+
else if (comp_k_ptr->Get_rate_name().size() > 0)
|
|
2077
|
+
{
|
|
2078
|
+
output_msg(sformatf(
|
|
2079
|
+
"\t[%g mol/(mol kinetic reactant %s)]\n",
|
|
2080
|
+
(double) comp_k_ptr->Get_phase_proportion(),
|
|
2081
|
+
comp_k_ptr->Get_rate_name().c_str()));
|
|
2082
|
+
}
|
|
2083
|
+
else
|
|
2084
|
+
{
|
|
2085
|
+
output_msg(sformatf("\n"));
|
|
2086
|
+
}
|
|
2087
|
+
output_msg(sformatf("\t%-20s%12s%12s%12s%12s\n", " ",
|
|
2088
|
+
" ", "Mole", " ", "Log"));
|
|
2089
|
+
output_msg(sformatf("\t%-20s%12s%12s%12s%12s\n\n",
|
|
2090
|
+
"Species", "Moles", "Fraction", "Molality",
|
|
2091
|
+
"Molality"));
|
|
2092
|
+
for (int i = 0; i < (int)species_list.size(); i++)
|
|
2093
|
+
{
|
|
2094
|
+
if (species_list[i].master_s != master_ptr->s)
|
|
2095
|
+
continue;
|
|
2096
|
+
/*
|
|
2097
|
+
* Print species data
|
|
2098
|
+
*/
|
|
2099
|
+
if (x[k]->moles >= MIN_RELATED_SURFACE)
|
|
2100
|
+
{
|
|
2101
|
+
molfrac =
|
|
2102
|
+
(LDBLE) (species_list[i].s->moles) / x[k]->moles *
|
|
2103
|
+
species_list[i].s->equiv;
|
|
2104
|
+
}
|
|
2105
|
+
else
|
|
2106
|
+
{
|
|
2107
|
+
molfrac = 0.0;
|
|
2108
|
+
}
|
|
2109
|
+
output_msg(sformatf(
|
|
2110
|
+
"\t%-20s%12.3e%12.3f%12.3e%12.3f\n",
|
|
2111
|
+
species_list[i].s->name,
|
|
2112
|
+
(double) species_list[i].s->moles,
|
|
2113
|
+
(double) molfrac,
|
|
2114
|
+
(double) (species_list[i].s->moles /
|
|
2115
|
+
mass_water_aq_x),
|
|
2116
|
+
log10(species_list[i].s->moles /
|
|
2117
|
+
mass_water_aq_x)));
|
|
2118
|
+
}
|
|
2119
|
+
output_msg(sformatf("\n"));
|
|
2120
|
+
}
|
|
2121
|
+
}
|
|
2122
|
+
}
|
|
2123
|
+
return (OK);
|
|
2124
|
+
}
|
|
2125
|
+
|
|
2126
|
+
/* ---------------------------------------------------------------------- */
|
|
2127
|
+
int Phreeqc::
|
|
2128
|
+
print_totals(void)
|
|
2129
|
+
/* ---------------------------------------------------------------------- */
|
|
2130
|
+
{
|
|
2131
|
+
/*
|
|
2132
|
+
* Print total concentrations of elements, molality and moles.
|
|
2133
|
+
*/
|
|
2134
|
+
int i, pure_water;
|
|
2135
|
+
LDBLE dens;
|
|
2136
|
+
|
|
2137
|
+
if (pr.totals == FALSE || pr.all == FALSE)
|
|
2138
|
+
return (OK);
|
|
2139
|
+
print_centered("Solution composition");
|
|
2140
|
+
pure_water = TRUE;
|
|
2141
|
+
output_msg(sformatf("\t%-15s%12s%12s\n\n", "Elements", "Molality",
|
|
2142
|
+
"Moles"));
|
|
2143
|
+
for (i = 0; i < count_unknowns; i++)
|
|
2144
|
+
{
|
|
2145
|
+
if (x[i] == alkalinity_unknown)
|
|
2146
|
+
{
|
|
2147
|
+
output_msg(sformatf("\t%-15s%12.3e%12.3e\n",
|
|
2148
|
+
"Alkalinity",
|
|
2149
|
+
(double) (x[i]->f / mass_water_aq_x),
|
|
2150
|
+
(double) x[i]->f));
|
|
2151
|
+
pure_water = FALSE;
|
|
2152
|
+
}
|
|
2153
|
+
if (x[i] == ph_unknown)
|
|
2154
|
+
continue;
|
|
2155
|
+
if (x[i] == pe_unknown)
|
|
2156
|
+
continue;
|
|
2157
|
+
if (x[i] == charge_balance_unknown)
|
|
2158
|
+
{
|
|
2159
|
+
output_msg(sformatf("\t%-15s%12.3e%12.3e",
|
|
2160
|
+
x[i]->description,
|
|
2161
|
+
(double) (x[i]->sum / mass_water_aq_x),
|
|
2162
|
+
(double) x[i]->sum));
|
|
2163
|
+
output_msg(sformatf(" Charge balance\n"));
|
|
2164
|
+
pure_water = FALSE;
|
|
2165
|
+
continue;
|
|
2166
|
+
}
|
|
2167
|
+
if (x[i]->type == SOLUTION_PHASE_BOUNDARY)
|
|
2168
|
+
{
|
|
2169
|
+
output_msg(sformatf("\t%-15s%12.3e%12.3e",
|
|
2170
|
+
x[i]->description,
|
|
2171
|
+
(double) (x[i]->sum / mass_water_aq_x),
|
|
2172
|
+
(double) x[i]->sum));
|
|
2173
|
+
output_msg(sformatf(" Equilibrium with %s\n",
|
|
2174
|
+
x[i]->phase->name));
|
|
2175
|
+
pure_water = FALSE;
|
|
2176
|
+
continue;
|
|
2177
|
+
}
|
|
2178
|
+
if (x[i]->type == MB)
|
|
2179
|
+
{
|
|
2180
|
+
output_msg(sformatf("\t%-15s%12.3e%12.3e\n",
|
|
2181
|
+
x[i]->description,
|
|
2182
|
+
(double) (x[i]->sum / mass_water_aq_x),
|
|
2183
|
+
(double) x[i]->sum));
|
|
2184
|
+
pure_water = FALSE;
|
|
2185
|
+
}
|
|
2186
|
+
}
|
|
2187
|
+
|
|
2188
|
+
if (pure_water == TRUE)
|
|
2189
|
+
{
|
|
2190
|
+
output_msg(sformatf("\t%-15s\n", "Pure water"));
|
|
2191
|
+
}
|
|
2192
|
+
/*
|
|
2193
|
+
* Description of solution
|
|
2194
|
+
*/
|
|
2195
|
+
output_msg(sformatf("\n"));
|
|
2196
|
+
print_centered("Description of solution");
|
|
2197
|
+
/*
|
|
2198
|
+
* pH
|
|
2199
|
+
*/
|
|
2200
|
+
output_msg(sformatf("%45s%7.3f ", "pH = ",
|
|
2201
|
+
(double) (-(s_hplus->la))));
|
|
2202
|
+
if (ph_unknown == NULL)
|
|
2203
|
+
{
|
|
2204
|
+
output_msg(sformatf("\n"));
|
|
2205
|
+
}
|
|
2206
|
+
else if (ph_unknown == charge_balance_unknown)
|
|
2207
|
+
{
|
|
2208
|
+
output_msg(sformatf(" Charge balance\n"));
|
|
2209
|
+
}
|
|
2210
|
+
else if (ph_unknown->type == SOLUTION_PHASE_BOUNDARY)
|
|
2211
|
+
{
|
|
2212
|
+
output_msg(sformatf(" Equilibrium with %s\n",
|
|
2213
|
+
ph_unknown->phase->name));
|
|
2214
|
+
}
|
|
2215
|
+
else if (ph_unknown->type == ALK)
|
|
2216
|
+
{
|
|
2217
|
+
output_msg(sformatf(" Adjust alkalinity\n"));
|
|
2218
|
+
}
|
|
2219
|
+
/*
|
|
2220
|
+
* pe
|
|
2221
|
+
*/
|
|
2222
|
+
output_msg(sformatf("%45s%7.3f ", "pe = ",
|
|
2223
|
+
(double) (-(s_eminus->la))));
|
|
2224
|
+
if (pe_unknown == NULL)
|
|
2225
|
+
{
|
|
2226
|
+
output_msg(sformatf("\n"));
|
|
2227
|
+
}
|
|
2228
|
+
else if (pe_unknown == charge_balance_unknown)
|
|
2229
|
+
{
|
|
2230
|
+
output_msg(sformatf(" Charge balance\n"));
|
|
2231
|
+
}
|
|
2232
|
+
else if (pe_unknown->type == SOLUTION_PHASE_BOUNDARY)
|
|
2233
|
+
{
|
|
2234
|
+
output_msg(sformatf(" Equilibrium with %s\n",
|
|
2235
|
+
pe_unknown->phase->name));
|
|
2236
|
+
}
|
|
2237
|
+
else if (pe_unknown->type == MH)
|
|
2238
|
+
{
|
|
2239
|
+
output_msg(sformatf(" Adjusted to redox equilibrium\n"));
|
|
2240
|
+
}
|
|
2241
|
+
/*
|
|
2242
|
+
* Others
|
|
2243
|
+
*/
|
|
2244
|
+
calc_SC();
|
|
2245
|
+
if (SC > 0)
|
|
2246
|
+
{
|
|
2247
|
+
//output_msg(sformatf("%36s%i%7s%i\n",
|
|
2248
|
+
#ifdef NO_UTF8_ENCODING
|
|
2249
|
+
output_msg(sformatf("%35s%3.0f%7s%i\n",
|
|
2250
|
+
"Specific Conductance (uS/cm, ", tc_x, "oC) = ", (int) SC));
|
|
2251
|
+
#else
|
|
2252
|
+
output_msg(sformatf("%36s%3.0f%7s%i\n",
|
|
2253
|
+
"Specific Conductance (µS/cm, ", tc_x, "°C) = ", (int) SC));
|
|
2254
|
+
#endif
|
|
2255
|
+
}
|
|
2256
|
+
/* VP: Density Start */
|
|
2257
|
+
if (print_density)
|
|
2258
|
+
{
|
|
2259
|
+
dens = calc_dens();
|
|
2260
|
+
#ifdef NO_UTF8_ENCODING
|
|
2261
|
+
output_msg(sformatf("%45s%9.5f", "Density (g/cm3) = ",
|
|
2262
|
+
#else
|
|
2263
|
+
output_msg(sformatf("%46s%9.5f", "Density (g/cm³) = ",
|
|
2264
|
+
#endif
|
|
2265
|
+
(double) dens));
|
|
2266
|
+
if (state == INITIAL_SOLUTION && use.Get_solution_ptr()->Get_initial_data()->Get_calc_density())
|
|
2267
|
+
{
|
|
2268
|
+
output_msg(sformatf(" (Iterated) "));
|
|
2269
|
+
}
|
|
2270
|
+
if (dens > 1.999) output_msg(sformatf("%18s", " (Program limit)"));
|
|
2271
|
+
output_msg(sformatf("\n"));
|
|
2272
|
+
output_msg(sformatf("%45s%9.5f\n", " Volume (L) = ",
|
|
2273
|
+
(double) calc_solution_volume()));
|
|
2274
|
+
}
|
|
2275
|
+
/* VP: Density End */
|
|
2276
|
+
//#ifdef NPP
|
|
2277
|
+
if (print_viscosity)
|
|
2278
|
+
{
|
|
2279
|
+
viscosity(nullptr);
|
|
2280
|
+
output_msg(sformatf("%45s%9.5f", "Viscosity (mPa s) = ", (double) viscos));
|
|
2281
|
+
if (tc_x > 200 && !pure_water)
|
|
2282
|
+
{
|
|
2283
|
+
#ifdef NO_UTF8_ENCODING
|
|
2284
|
+
output_msg(sformatf("%18s\n",
|
|
2285
|
+
" (solute contributions limited to 200 oC)"));
|
|
2286
|
+
#else
|
|
2287
|
+
output_msg(sformatf("%18s\n",
|
|
2288
|
+
" (solute contributions limited to 200 °C)"));
|
|
2289
|
+
#endif
|
|
2290
|
+
}
|
|
2291
|
+
else output_msg(sformatf("\n"));
|
|
2292
|
+
}
|
|
2293
|
+
//#endif
|
|
2294
|
+
output_msg(sformatf("%45s%7.3f\n", "Activity of water = ",
|
|
2295
|
+
exp(s_h2o->la * LOG_10)));
|
|
2296
|
+
output_msg(sformatf("%45s%11.3e\n", "Ionic strength (mol/kgw) = ",
|
|
2297
|
+
(double) mu_x));
|
|
2298
|
+
output_msg(sformatf("%45s%11.3e\n", "Mass of water (kg) = ",
|
|
2299
|
+
(double) mass_water_aq_x));
|
|
2300
|
+
if (alkalinity_unknown == NULL)
|
|
2301
|
+
{
|
|
2302
|
+
output_msg(sformatf("%45s%11.3e\n",
|
|
2303
|
+
"Total alkalinity (eq/kg) = ",
|
|
2304
|
+
(double) (total_alkalinity / mass_water_aq_x)));
|
|
2305
|
+
}
|
|
2306
|
+
if (carbon_unknown == NULL && total_carbon)
|
|
2307
|
+
{
|
|
2308
|
+
output_msg(sformatf("%45s%11.3e\n",
|
|
2309
|
+
"Total carbon (mol/kg) = ",
|
|
2310
|
+
(double) (total_carbon / mass_water_aq_x)));
|
|
2311
|
+
}
|
|
2312
|
+
if (total_co2)
|
|
2313
|
+
output_msg(sformatf("%45s%11.3e\n", "Total CO2 (mol/kg) = ",
|
|
2314
|
+
(double) (total_co2 / mass_water_aq_x)));
|
|
2315
|
+
#ifdef NO_UTF8_ENCODING
|
|
2316
|
+
output_msg(sformatf("%45s%6.2f\n", "Temperature (oC) = ",
|
|
2317
|
+
#else
|
|
2318
|
+
output_msg(sformatf("%46s%6.2f\n", "Temperature (°C) = ",
|
|
2319
|
+
#endif
|
|
2320
|
+
(double) tc_x));
|
|
2321
|
+
|
|
2322
|
+
if (patm_x != 1.0)
|
|
2323
|
+
{
|
|
2324
|
+
/* only print if different than default */
|
|
2325
|
+
output_msg(sformatf("%45s%5.2f\n", "Pressure (atm) = ",
|
|
2326
|
+
(double) patm_x));
|
|
2327
|
+
}
|
|
2328
|
+
|
|
2329
|
+
if (potV_x)
|
|
2330
|
+
{
|
|
2331
|
+
output_msg(sformatf("%45s%5.2f\n", "Electrical Potential (Volt) = ",
|
|
2332
|
+
(double)potV_x));
|
|
2333
|
+
}
|
|
2334
|
+
|
|
2335
|
+
output_msg(sformatf("%45s%11.3e\n", "Electrical balance (eq) = ",
|
|
2336
|
+
(double) cb_x));
|
|
2337
|
+
output_msg(sformatf("%45s%6.2f\n",
|
|
2338
|
+
"Percent error, 100*(Cat-|An|)/(Cat+|An|) = ",
|
|
2339
|
+
(double) (100 * cb_x / total_ions_x)));
|
|
2340
|
+
if (iterations == overall_iterations)
|
|
2341
|
+
output_msg(sformatf("%45s%3d\n", "Iterations = ", iterations));
|
|
2342
|
+
else
|
|
2343
|
+
output_msg(sformatf("%45s%3d (%d overall)\n", "Iterations = ", iterations, overall_iterations));
|
|
2344
|
+
if (pitzer_model == TRUE || sit_model == TRUE)
|
|
2345
|
+
{
|
|
2346
|
+
if (always_full_pitzer == FALSE)
|
|
2347
|
+
{
|
|
2348
|
+
output_msg(sformatf("%45s%3d\n", "Gamma iterations = ",
|
|
2349
|
+
gamma_iterations));
|
|
2350
|
+
}
|
|
2351
|
+
else
|
|
2352
|
+
{
|
|
2353
|
+
output_msg(sformatf("%45s%3d\n", "Gamma iterations = ",
|
|
2354
|
+
iterations));
|
|
2355
|
+
}
|
|
2356
|
+
output_msg(sformatf("%45s%9.5f\n", "Osmotic coefficient = ",
|
|
2357
|
+
(double) COSMOT));
|
|
2358
|
+
if (print_density) output_msg(sformatf("%45s%9.5f\n", "Density of water = ",
|
|
2359
|
+
(double) DW0));
|
|
2360
|
+
}
|
|
2361
|
+
output_msg(sformatf("%45s%e\n", "Total H = ", (double) total_h_x));
|
|
2362
|
+
output_msg(sformatf("%45s%e\n", "Total O = ", (double) total_o_x));
|
|
2363
|
+
output_msg(sformatf("\n"));
|
|
2364
|
+
|
|
2365
|
+
return (OK);
|
|
2366
|
+
}
|
|
2367
|
+
/* ---------------------------------------------------------------------- */
|
|
2368
|
+
int Phreeqc::
|
|
2369
|
+
print_user_print(void)
|
|
2370
|
+
/* ---------------------------------------------------------------------- */
|
|
2371
|
+
{
|
|
2372
|
+
/*
|
|
2373
|
+
* Print with user defined BASIC print routine
|
|
2374
|
+
*/
|
|
2375
|
+
cxxKinetics *kinetics_ptr;
|
|
2376
|
+
|
|
2377
|
+
char l_command[] = "run";
|
|
2378
|
+
|
|
2379
|
+
if (pr.user_print == FALSE || pr.all == FALSE)
|
|
2380
|
+
return (OK);
|
|
2381
|
+
if (user_print->commands.size() == 0)
|
|
2382
|
+
return (OK);
|
|
2383
|
+
kinetics_ptr = NULL;
|
|
2384
|
+
if (use.Get_kinetics_in() == TRUE)
|
|
2385
|
+
{
|
|
2386
|
+
kinetics_ptr = use.Get_kinetics_ptr();
|
|
2387
|
+
if (state == TRANSPORT || state == PHAST || state == ADVECTION)
|
|
2388
|
+
{
|
|
2389
|
+
use.Set_kinetics_ptr(Utilities::Rxn_find(Rxn_kinetics_map, use.Get_n_kinetics_user()));
|
|
2390
|
+
}
|
|
2391
|
+
else
|
|
2392
|
+
{
|
|
2393
|
+
use.Set_kinetics_ptr(Utilities::Rxn_find(Rxn_kinetics_map, -2));
|
|
2394
|
+
}
|
|
2395
|
+
}
|
|
2396
|
+
print_centered("User print");
|
|
2397
|
+
if (user_print->new_def == TRUE)
|
|
2398
|
+
{
|
|
2399
|
+
/* basic_renumber(user_print->commands, &user_print->linebase, &user_print->varbase, &user_print->loopbase); */
|
|
2400
|
+
if (basic_compile
|
|
2401
|
+
(user_print->commands.c_str(), &user_print->linebase,
|
|
2402
|
+
&user_print->varbase, &user_print->loopbase) != 0)
|
|
2403
|
+
{
|
|
2404
|
+
error_msg("Fatal Basic error in USER_PRINT.", STOP);
|
|
2405
|
+
}
|
|
2406
|
+
user_print->new_def = FALSE;
|
|
2407
|
+
}
|
|
2408
|
+
if (basic_run
|
|
2409
|
+
(l_command, user_print->linebase, user_print->varbase,
|
|
2410
|
+
user_print->loopbase) != 0)
|
|
2411
|
+
{
|
|
2412
|
+
error_msg("Fatal Basic error in USER_PRINT.", STOP);
|
|
2413
|
+
}
|
|
2414
|
+
if (this->output_newline) {
|
|
2415
|
+
output_msg(sformatf("\n"));
|
|
2416
|
+
}
|
|
2417
|
+
this->Set_output_newline(true);
|
|
2418
|
+
if (use.Get_kinetics_in() == TRUE)
|
|
2419
|
+
{
|
|
2420
|
+
use.Set_kinetics_ptr(kinetics_ptr);
|
|
2421
|
+
}
|
|
2422
|
+
return (OK);
|
|
2423
|
+
}
|
|
2424
|
+
|
|
2425
|
+
/* ---------------------------------------------------------------------- */
|
|
2426
|
+
int Phreeqc::
|
|
2427
|
+
print_using(void)
|
|
2428
|
+
/* ---------------------------------------------------------------------- */
|
|
2429
|
+
{
|
|
2430
|
+
/*
|
|
2431
|
+
* Print entities used in calculation
|
|
2432
|
+
*/
|
|
2433
|
+
cxxMix * mix_ptr;
|
|
2434
|
+
cxxSolution *solution_ptr;
|
|
2435
|
+
|
|
2436
|
+
if (pr.use == FALSE || pr.all == FALSE)
|
|
2437
|
+
return (OK);
|
|
2438
|
+
if (state < REACTION || phast == TRUE)
|
|
2439
|
+
return (OK);
|
|
2440
|
+
/*
|
|
2441
|
+
* Mixture or Solution
|
|
2442
|
+
*/
|
|
2443
|
+
if (use.Get_mix_in() == TRUE)
|
|
2444
|
+
{
|
|
2445
|
+
if (state == TRANSPORT)
|
|
2446
|
+
{
|
|
2447
|
+
mix_ptr = Utilities::Rxn_find(Rxn_mix_map, use.Get_n_mix_user());
|
|
2448
|
+
}
|
|
2449
|
+
else
|
|
2450
|
+
{
|
|
2451
|
+
mix_ptr = Utilities::Rxn_find(Rxn_mix_map, use.Get_n_mix_user_orig());
|
|
2452
|
+
}
|
|
2453
|
+
if (mix_ptr == NULL)
|
|
2454
|
+
{
|
|
2455
|
+
mix_ptr = use.Get_mix_ptr();
|
|
2456
|
+
}
|
|
2457
|
+
if (mix_ptr != NULL)
|
|
2458
|
+
{
|
|
2459
|
+
if (state == TRANSPORT)
|
|
2460
|
+
{
|
|
2461
|
+
output_msg(sformatf("Using mix %d.\t%s\n",
|
|
2462
|
+
use.Get_n_mix_user(), mix_ptr->Get_description().c_str()));
|
|
2463
|
+
}
|
|
2464
|
+
else
|
|
2465
|
+
{
|
|
2466
|
+
output_msg(sformatf("Using mix %d.\t%s\n",
|
|
2467
|
+
use.Get_n_mix_user_orig(), mix_ptr->Get_description().c_str()));
|
|
2468
|
+
}
|
|
2469
|
+
|
|
2470
|
+
}
|
|
2471
|
+
}
|
|
2472
|
+
else
|
|
2473
|
+
{
|
|
2474
|
+
solution_ptr = Utilities::Rxn_find(Rxn_solution_map, use.Get_n_solution_user());
|
|
2475
|
+
output_msg(sformatf("Using solution %d.\t%s\n",
|
|
2476
|
+
use.Get_n_solution_user(), solution_ptr->Get_description().c_str()));
|
|
2477
|
+
}
|
|
2478
|
+
/*
|
|
2479
|
+
* Exchange and surface
|
|
2480
|
+
*/
|
|
2481
|
+
if (use.Get_exchange_in())
|
|
2482
|
+
{
|
|
2483
|
+
cxxExchange *exchange_ptr = Utilities::Rxn_find(Rxn_exchange_map, use.Get_n_exchange_user());
|
|
2484
|
+
output_msg(sformatf("Using exchange %d.\t%s\n",
|
|
2485
|
+
use.Get_n_exchange_user(), exchange_ptr->Get_description().c_str()));
|
|
2486
|
+
}
|
|
2487
|
+
if (use.Get_surface_in())
|
|
2488
|
+
{
|
|
2489
|
+
cxxSurface *surface_ptr = Utilities::Rxn_find(Rxn_surface_map, use.Get_n_surface_user());
|
|
2490
|
+
output_msg(sformatf("Using surface %d.\t%s\n",
|
|
2491
|
+
use.Get_n_surface_user(), surface_ptr->Get_description().c_str()));
|
|
2492
|
+
}
|
|
2493
|
+
if (use.Get_pp_assemblage_in() == TRUE)
|
|
2494
|
+
{
|
|
2495
|
+
cxxPPassemblage * pp_assemblage_ptr = Utilities::Rxn_find(Rxn_pp_assemblage_map, use.Get_n_pp_assemblage_user());
|
|
2496
|
+
output_msg(sformatf("Using pure phase assemblage %d.\t%s\n",
|
|
2497
|
+
use.Get_n_pp_assemblage_user(), pp_assemblage_ptr->Get_description().c_str()));
|
|
2498
|
+
}
|
|
2499
|
+
if (use.Get_ss_assemblage_in() == TRUE)
|
|
2500
|
+
{
|
|
2501
|
+
cxxSSassemblage * ss_assemblage_ptr = Utilities::Rxn_find(Rxn_ss_assemblage_map, use.Get_n_ss_assemblage_user());
|
|
2502
|
+
output_msg(sformatf(
|
|
2503
|
+
"Using solid solution assemblage %d.\t%s\n",
|
|
2504
|
+
use.Get_n_ss_assemblage_user(),
|
|
2505
|
+
ss_assemblage_ptr->Get_description().c_str()));
|
|
2506
|
+
}
|
|
2507
|
+
if (use.Get_gas_phase_in())
|
|
2508
|
+
{
|
|
2509
|
+
cxxGasPhase * gas_phase_ptr = Utilities::Rxn_find(Rxn_gas_phase_map, use.Get_n_gas_phase_user());
|
|
2510
|
+
output_msg(sformatf("Using gas phase %d.\t%s\n",
|
|
2511
|
+
use.Get_n_gas_phase_user(), gas_phase_ptr->Get_description().c_str()));
|
|
2512
|
+
}
|
|
2513
|
+
if (use.Get_temperature_in())
|
|
2514
|
+
{
|
|
2515
|
+
cxxTemperature *temperature_ptr = Utilities::Rxn_find(Rxn_temperature_map, use.Get_n_temperature_user());
|
|
2516
|
+
output_msg(sformatf("Using temperature %d.\t%s\n",
|
|
2517
|
+
use.Get_n_temperature_user(), temperature_ptr->Get_description().c_str()));
|
|
2518
|
+
}
|
|
2519
|
+
if (use.Get_pressure_in())
|
|
2520
|
+
{
|
|
2521
|
+
cxxPressure *pressure_ptr = Utilities::Rxn_find(Rxn_pressure_map, use.Get_n_pressure_user());
|
|
2522
|
+
output_msg(sformatf("Using pressure %d.\t%s\n",
|
|
2523
|
+
use.Get_n_pressure_user(), pressure_ptr->Get_description().c_str()));
|
|
2524
|
+
}
|
|
2525
|
+
if (use.Get_reaction_in())
|
|
2526
|
+
{
|
|
2527
|
+
if (state != TRANSPORT || transport_step > 0)
|
|
2528
|
+
{
|
|
2529
|
+
cxxReaction *reaction_ptr = Utilities::Rxn_find(Rxn_reaction_map, use.Get_n_reaction_user());
|
|
2530
|
+
output_msg(sformatf("Using reaction %d.\t%s\n",
|
|
2531
|
+
use.Get_n_reaction_user(), reaction_ptr->Get_description().c_str()));
|
|
2532
|
+
}
|
|
2533
|
+
}
|
|
2534
|
+
if (use.Get_kinetics_in())
|
|
2535
|
+
{
|
|
2536
|
+
cxxKinetics * kinetics_ptr;
|
|
2537
|
+
if (state == TRANSPORT || state == PHAST || state == ADVECTION)
|
|
2538
|
+
{
|
|
2539
|
+
kinetics_ptr = Utilities::Rxn_find(Rxn_kinetics_map, use.Get_n_kinetics_user());
|
|
2540
|
+
}
|
|
2541
|
+
else
|
|
2542
|
+
{
|
|
2543
|
+
kinetics_ptr = Utilities::Rxn_find(Rxn_kinetics_map, -2);
|
|
2544
|
+
}
|
|
2545
|
+
output_msg(sformatf("Using kinetics %d.\t%s\n",
|
|
2546
|
+
use.Get_n_kinetics_user(), kinetics_ptr->Get_description().c_str()));
|
|
2547
|
+
}
|
|
2548
|
+
output_msg(sformatf("\n"));
|
|
2549
|
+
return (OK);
|
|
2550
|
+
}
|
|
2551
|
+
|
|
2552
|
+
/* ---------------------------------------------------------------------- */
|
|
2553
|
+
int Phreeqc::
|
|
2554
|
+
punch_gas_phase(void)
|
|
2555
|
+
/* ---------------------------------------------------------------------- */
|
|
2556
|
+
{
|
|
2557
|
+
/*
|
|
2558
|
+
* Prints selected gas phase data
|
|
2559
|
+
*/
|
|
2560
|
+
//int i;
|
|
2561
|
+
LDBLE p, total_moles, volume;
|
|
2562
|
+
LDBLE moles;
|
|
2563
|
+
bool PR = false;
|
|
2564
|
+
|
|
2565
|
+
//if (punch.count_gases <= 0)
|
|
2566
|
+
if (current_selected_output->Get_gases().size() == 0)
|
|
2567
|
+
return (OK);
|
|
2568
|
+
p = 0.0;
|
|
2569
|
+
total_moles = 0.0;
|
|
2570
|
+
volume = 0.0;
|
|
2571
|
+
cxxGasPhase * gas_phase_ptr = use.Get_gas_phase_ptr();
|
|
2572
|
+
|
|
2573
|
+
if (gas_unknown != NULL && use.Get_gas_phase_ptr() != NULL)
|
|
2574
|
+
{
|
|
2575
|
+
if (gas_phase_ptr->Get_v_m() >= 0.01)
|
|
2576
|
+
{
|
|
2577
|
+
PR = true;
|
|
2578
|
+
}
|
|
2579
|
+
if (gas_phase_ptr->Get_type() == cxxGasPhase::GP_PRESSURE)
|
|
2580
|
+
{
|
|
2581
|
+
if (gas_unknown->moles >= 1e-12)
|
|
2582
|
+
{
|
|
2583
|
+
gas_phase_ptr->Set_total_moles(gas_unknown->moles);
|
|
2584
|
+
gas_phase_ptr->Set_volume(
|
|
2585
|
+
gas_phase_ptr->Get_total_moles() * R_LITER_ATM * tk_x /
|
|
2586
|
+
gas_phase_ptr->Get_total_p());
|
|
2587
|
+
if (PR)
|
|
2588
|
+
{
|
|
2589
|
+
gas_phase_ptr->Set_volume(gas_phase_ptr->Get_v_m() * gas_unknown->moles);
|
|
2590
|
+
}
|
|
2591
|
+
}
|
|
2592
|
+
else
|
|
2593
|
+
{
|
|
2594
|
+
gas_phase_ptr->Set_volume(0);
|
|
2595
|
+
}
|
|
2596
|
+
}
|
|
2597
|
+
p = gas_phase_ptr->Get_total_p();
|
|
2598
|
+
total_moles = gas_phase_ptr->Get_total_moles();
|
|
2599
|
+
//volume = total_moles * R_LITER_ATM * tk_x / gas_phase_ptr->Get_total_p();
|
|
2600
|
+
//if (gas_phase_ptr->Get_v_m() > 0.03)
|
|
2601
|
+
// volume = 0.03 * gas_phase_ptr->Get_total_moles();
|
|
2602
|
+
volume = gas_phase_ptr->Get_volume();
|
|
2603
|
+
|
|
2604
|
+
}
|
|
2605
|
+
if (!current_selected_output->Get_high_precision())
|
|
2606
|
+
{
|
|
2607
|
+
fpunchf("pressure", "%12.4e\t", (double) p);
|
|
2608
|
+
fpunchf("total mol", "%12.4e\t", (double) total_moles);
|
|
2609
|
+
fpunchf("volume", "%12.4e\t", (double) volume);
|
|
2610
|
+
}
|
|
2611
|
+
else
|
|
2612
|
+
{
|
|
2613
|
+
fpunchf("pressure", "%20.12e\t", (double) p);
|
|
2614
|
+
fpunchf("total mol", "%20.12e\t", (double) total_moles);
|
|
2615
|
+
fpunchf("volume", "%20.12e\t", (double) volume);
|
|
2616
|
+
}
|
|
2617
|
+
for (size_t i = 0; i < current_selected_output->Get_gases().size(); i++)
|
|
2618
|
+
{
|
|
2619
|
+
moles = 0.0;
|
|
2620
|
+
if (gas_phase_ptr != NULL && current_selected_output->Get_gases()[i].second != NULL)
|
|
2621
|
+
{
|
|
2622
|
+
for (size_t j = 0; j < gas_phase_ptr->Get_gas_comps().size(); j++)
|
|
2623
|
+
{
|
|
2624
|
+
cxxGasComp *gc_ptr = &(gas_phase_ptr->Get_gas_comps()[j]);
|
|
2625
|
+
int k;
|
|
2626
|
+
class phase *phase_ptr = phase_bsearch(gc_ptr->Get_phase_name().c_str() , &k, FALSE);
|
|
2627
|
+
if (phase_ptr != current_selected_output->Get_gases()[i].second)
|
|
2628
|
+
continue;
|
|
2629
|
+
moles = phase_ptr->moles_x;
|
|
2630
|
+
if (moles <= MIN_TOTAL)
|
|
2631
|
+
moles = 0.0;
|
|
2632
|
+
break;
|
|
2633
|
+
}
|
|
2634
|
+
}
|
|
2635
|
+
if (!current_selected_output->Get_high_precision())
|
|
2636
|
+
{
|
|
2637
|
+
fpunchf(sformatf("g_%s", current_selected_output->Get_gases()[i].first.c_str()), "%12.4e\t", (double) moles);
|
|
2638
|
+
}
|
|
2639
|
+
else
|
|
2640
|
+
{
|
|
2641
|
+
fpunchf(sformatf("g_%s", current_selected_output->Get_gases()[i].first.c_str()), "%20.12e\t",
|
|
2642
|
+
(double) moles);
|
|
2643
|
+
}
|
|
2644
|
+
}
|
|
2645
|
+
return (OK);
|
|
2646
|
+
}
|
|
2647
|
+
/* ---------------------------------------------------------------------- */
|
|
2648
|
+
int Phreeqc::
|
|
2649
|
+
punch_ss_assemblage(void)
|
|
2650
|
+
/* ---------------------------------------------------------------------- */
|
|
2651
|
+
{
|
|
2652
|
+
/*
|
|
2653
|
+
* Prints solid solution composition if present
|
|
2654
|
+
*/
|
|
2655
|
+
//int j, k;
|
|
2656
|
+
int found;
|
|
2657
|
+
LDBLE moles;
|
|
2658
|
+
|
|
2659
|
+
/*
|
|
2660
|
+
* Print solid solutions
|
|
2661
|
+
*/
|
|
2662
|
+
for (size_t k = 0; k < current_selected_output->Get_s_s().size(); k++)
|
|
2663
|
+
{
|
|
2664
|
+
found = FALSE;
|
|
2665
|
+
if (use.Get_ss_assemblage_ptr() != NULL)
|
|
2666
|
+
{
|
|
2667
|
+
std::vector<cxxSS *> ss_ptrs = use.Get_ss_assemblage_ptr()->Vectorize();
|
|
2668
|
+
for (int j = 0; j < (int) ss_ptrs.size(); j++)
|
|
2669
|
+
{
|
|
2670
|
+
cxxSS * ss_ptr = ss_ptrs[j];
|
|
2671
|
+
for (int i = 0; i < (int) ss_ptr->Get_ss_comps().size(); i++)
|
|
2672
|
+
{
|
|
2673
|
+
cxxSScomp *comp_ptr = &(ss_ptr->Get_ss_comps()[i]);
|
|
2674
|
+
|
|
2675
|
+
if (strcmp_nocase(current_selected_output->Get_s_s()[k].first.c_str(), comp_ptr->Get_name().c_str()) == 0)
|
|
2676
|
+
{
|
|
2677
|
+
if (ss_ptr->Get_ss_in())
|
|
2678
|
+
{
|
|
2679
|
+
moles = comp_ptr->Get_moles();
|
|
2680
|
+
}
|
|
2681
|
+
else
|
|
2682
|
+
{
|
|
2683
|
+
moles = 0;
|
|
2684
|
+
}
|
|
2685
|
+
if (!current_selected_output->Get_high_precision())
|
|
2686
|
+
{
|
|
2687
|
+
fpunchf(sformatf("s_%s", current_selected_output->Get_s_s()[k].first.c_str()),
|
|
2688
|
+
"%12.4e\t", (double) moles);
|
|
2689
|
+
}
|
|
2690
|
+
else
|
|
2691
|
+
{
|
|
2692
|
+
fpunchf(sformatf("s_%s", current_selected_output->Get_s_s()[k].first.c_str()),
|
|
2693
|
+
"%20.12e\t", (double) moles);
|
|
2694
|
+
}
|
|
2695
|
+
found = TRUE;
|
|
2696
|
+
break;
|
|
2697
|
+
}
|
|
2698
|
+
}
|
|
2699
|
+
if (found == TRUE)
|
|
2700
|
+
break;
|
|
2701
|
+
}
|
|
2702
|
+
}
|
|
2703
|
+
if (found == FALSE)
|
|
2704
|
+
{
|
|
2705
|
+
if (!current_selected_output->Get_high_precision())
|
|
2706
|
+
{
|
|
2707
|
+
fpunchf(sformatf("s_%s", current_selected_output->Get_s_s()[k].first.c_str()), "%12.4e\t", (double) 0.0);
|
|
2708
|
+
}
|
|
2709
|
+
else
|
|
2710
|
+
{
|
|
2711
|
+
fpunchf(sformatf("s_%s", current_selected_output->Get_s_s()[k].first.c_str()), "%20.12e\t",
|
|
2712
|
+
(double) 0.0);
|
|
2713
|
+
}
|
|
2714
|
+
}
|
|
2715
|
+
}
|
|
2716
|
+
return (OK);
|
|
2717
|
+
}
|
|
2718
|
+
|
|
2719
|
+
/* ---------------------------------------------------------------------- */
|
|
2720
|
+
int Phreeqc::
|
|
2721
|
+
punch_totals(void)
|
|
2722
|
+
/* ---------------------------------------------------------------------- */
|
|
2723
|
+
{
|
|
2724
|
+
/*
|
|
2725
|
+
* Print total concentrations of elements, molality and moles.
|
|
2726
|
+
*/
|
|
2727
|
+
//int j;
|
|
2728
|
+
LDBLE molality;
|
|
2729
|
+
|
|
2730
|
+
for (size_t j = 0; j < current_selected_output->Get_totals().size(); j++)
|
|
2731
|
+
{
|
|
2732
|
+
if (current_selected_output->Get_totals()[j].second == NULL)
|
|
2733
|
+
{
|
|
2734
|
+
molality = 0.0;
|
|
2735
|
+
}
|
|
2736
|
+
else if (((class master *) current_selected_output->Get_totals()[j].second)->primary == TRUE)
|
|
2737
|
+
{
|
|
2738
|
+
if (strncmp(current_selected_output->Get_totals()[j].first.c_str(), "Alkalinity", 20) == 0)
|
|
2739
|
+
{
|
|
2740
|
+
molality = total_alkalinity / mass_water_aq_x;
|
|
2741
|
+
} else
|
|
2742
|
+
{
|
|
2743
|
+
molality = ((class master *) current_selected_output->Get_totals()[j].second)->total_primary / mass_water_aq_x;
|
|
2744
|
+
}
|
|
2745
|
+
}
|
|
2746
|
+
else
|
|
2747
|
+
{
|
|
2748
|
+
molality = ((class master *) current_selected_output->Get_totals()[j].second)->total / mass_water_aq_x;
|
|
2749
|
+
}
|
|
2750
|
+
if (!current_selected_output->Get_high_precision())
|
|
2751
|
+
{
|
|
2752
|
+
fpunchf(sformatf("%s(mol/kgw)", current_selected_output->Get_totals()[j].first.c_str()),
|
|
2753
|
+
"%12.4e\t", (double) molality);
|
|
2754
|
+
}
|
|
2755
|
+
else
|
|
2756
|
+
{
|
|
2757
|
+
fpunchf(sformatf("%s(mol/kgw)", current_selected_output->Get_totals()[j].first.c_str()),
|
|
2758
|
+
"%20.12e\t", (double) molality);
|
|
2759
|
+
}
|
|
2760
|
+
}
|
|
2761
|
+
return (OK);
|
|
2762
|
+
}
|
|
2763
|
+
|
|
2764
|
+
/* ---------------------------------------------------------------------- */
|
|
2765
|
+
int Phreeqc::
|
|
2766
|
+
punch_molalities(void)
|
|
2767
|
+
/* ---------------------------------------------------------------------- */
|
|
2768
|
+
{
|
|
2769
|
+
/*
|
|
2770
|
+
* Print concentrations of species (aq, ex, surf)
|
|
2771
|
+
*/
|
|
2772
|
+
//int j;
|
|
2773
|
+
LDBLE molality;
|
|
2774
|
+
|
|
2775
|
+
for (size_t j = 0; j < current_selected_output->Get_molalities().size(); j++)
|
|
2776
|
+
{
|
|
2777
|
+
molality = 0.0;
|
|
2778
|
+
if (current_selected_output->Get_molalities()[j].second != NULL
|
|
2779
|
+
&& ((class species *) current_selected_output->Get_molalities()[j].second)->in == TRUE)
|
|
2780
|
+
{
|
|
2781
|
+
molality = ((class species *) current_selected_output->Get_molalities()[j].second)->moles / mass_water_aq_x;
|
|
2782
|
+
}
|
|
2783
|
+
if (!current_selected_output->Get_high_precision())
|
|
2784
|
+
{
|
|
2785
|
+
fpunchf(sformatf("m_%s(mol/kgw)", current_selected_output->Get_molalities()[j].first.c_str()),
|
|
2786
|
+
"%12.4e\t", (double) molality);
|
|
2787
|
+
}
|
|
2788
|
+
else
|
|
2789
|
+
{
|
|
2790
|
+
fpunchf(sformatf("m_%s(mol/kgw)", current_selected_output->Get_molalities()[j].first.c_str()),
|
|
2791
|
+
"%20.12e\t", (double) molality);
|
|
2792
|
+
}
|
|
2793
|
+
}
|
|
2794
|
+
return (OK);
|
|
2795
|
+
}
|
|
2796
|
+
|
|
2797
|
+
/* ---------------------------------------------------------------------- */
|
|
2798
|
+
int Phreeqc::
|
|
2799
|
+
punch_activities(void)
|
|
2800
|
+
/* ---------------------------------------------------------------------- */
|
|
2801
|
+
{
|
|
2802
|
+
/*
|
|
2803
|
+
* Print concentrations of species (aq, ex, surf)
|
|
2804
|
+
*/
|
|
2805
|
+
//int j;
|
|
2806
|
+
LDBLE la;
|
|
2807
|
+
|
|
2808
|
+
for (size_t j = 0; j < current_selected_output->Get_activities().size(); j++)
|
|
2809
|
+
{
|
|
2810
|
+
la = -999.999;
|
|
2811
|
+
if (current_selected_output->Get_activities()[j].second != NULL
|
|
2812
|
+
&& ((class species *) current_selected_output->Get_activities()[j].second)->in == TRUE)
|
|
2813
|
+
{
|
|
2814
|
+
/*la = punch.activities[j].s->lm + punch.activities[j].s->lg; */
|
|
2815
|
+
la = log_activity(current_selected_output->Get_activities()[j].first.c_str());
|
|
2816
|
+
}
|
|
2817
|
+
if (!current_selected_output->Get_high_precision())
|
|
2818
|
+
{
|
|
2819
|
+
fpunchf(sformatf("la_%s", current_selected_output->Get_activities()[j].first.c_str()), "%12.4e\t",
|
|
2820
|
+
(double) la);
|
|
2821
|
+
}
|
|
2822
|
+
else
|
|
2823
|
+
{
|
|
2824
|
+
fpunchf(sformatf("la_%s", current_selected_output->Get_activities()[j].first.c_str()),
|
|
2825
|
+
"%20.12e\t", (double) la);
|
|
2826
|
+
}
|
|
2827
|
+
}
|
|
2828
|
+
return (OK);
|
|
2829
|
+
}
|
|
2830
|
+
|
|
2831
|
+
/* ---------------------------------------------------------------------- */
|
|
2832
|
+
int Phreeqc::
|
|
2833
|
+
punch_pp_assemblage(void)
|
|
2834
|
+
/* ---------------------------------------------------------------------- */
|
|
2835
|
+
{
|
|
2836
|
+
/*
|
|
2837
|
+
* Prints masses of selected pure_phases in pp_assemblage
|
|
2838
|
+
*/
|
|
2839
|
+
//int i, j;
|
|
2840
|
+
LDBLE moles, delta_moles;
|
|
2841
|
+
for (size_t i = 0; i < current_selected_output->Get_pure_phases().size(); i++)
|
|
2842
|
+
{
|
|
2843
|
+
delta_moles = 0;
|
|
2844
|
+
moles = 0.0;
|
|
2845
|
+
if (current_selected_output->Get_pure_phases()[i].second != NULL)
|
|
2846
|
+
{
|
|
2847
|
+
for (int j = 0; j < count_unknowns; j++)
|
|
2848
|
+
{
|
|
2849
|
+
if (x.size() == 0 || x[j]->type != PP)
|
|
2850
|
+
continue;
|
|
2851
|
+
//cxxPPassemblageComp * comp_ptr = pp_assemblage_ptr->Find(x[j]->pp_assemblage_comp_name);
|
|
2852
|
+
cxxPPassemblageComp * comp_ptr = (cxxPPassemblageComp * ) x[j]->pp_assemblage_comp_ptr;
|
|
2853
|
+
/*
|
|
2854
|
+
* Print pure phase assemblage data
|
|
2855
|
+
*/
|
|
2856
|
+
if (current_selected_output->Get_pure_phases()[i].second != x[j]->phase)
|
|
2857
|
+
continue;
|
|
2858
|
+
if (state != TRANSPORT && state != PHAST)
|
|
2859
|
+
{
|
|
2860
|
+
moles = x[j]->moles;
|
|
2861
|
+
delta_moles =
|
|
2862
|
+
x[j]->moles - comp_ptr->Get_moles() -
|
|
2863
|
+
comp_ptr->Get_delta();
|
|
2864
|
+
}
|
|
2865
|
+
else
|
|
2866
|
+
{
|
|
2867
|
+
moles = x[j]->moles;
|
|
2868
|
+
delta_moles =
|
|
2869
|
+
x[j]->moles - comp_ptr->Get_initial_moles();
|
|
2870
|
+
}
|
|
2871
|
+
break;
|
|
2872
|
+
}
|
|
2873
|
+
}
|
|
2874
|
+
if (!current_selected_output->Get_high_precision())
|
|
2875
|
+
{
|
|
2876
|
+
fpunchf(current_selected_output->Get_pure_phases()[i].first.c_str(), "%12.4e\t", (double) moles);
|
|
2877
|
+
fpunchf(sformatf("d_%s", current_selected_output->Get_pure_phases()[i].first.c_str()), "%12.4e\t",
|
|
2878
|
+
(double) delta_moles);
|
|
2879
|
+
}
|
|
2880
|
+
else
|
|
2881
|
+
{
|
|
2882
|
+
fpunchf(current_selected_output->Get_pure_phases()[i].first.c_str(), "%20.12e\t", (double) moles);
|
|
2883
|
+
fpunchf(sformatf("d_%s", current_selected_output->Get_pure_phases()[i].first.c_str()),
|
|
2884
|
+
"%20.12e\t", (double) delta_moles);
|
|
2885
|
+
}
|
|
2886
|
+
}
|
|
2887
|
+
return (OK);
|
|
2888
|
+
}
|
|
2889
|
+
|
|
2890
|
+
#define PHAST_NULL(x) (phast ? NULL : x)
|
|
2891
|
+
/* ---------------------------------------------------------------------- */
|
|
2892
|
+
int Phreeqc::
|
|
2893
|
+
punch_identifiers(void)
|
|
2894
|
+
/* ---------------------------------------------------------------------- */
|
|
2895
|
+
{
|
|
2896
|
+
/*
|
|
2897
|
+
* prints series of integers to identify simulation number,
|
|
2898
|
+
* state of calculations, reaction or transport step number,
|
|
2899
|
+
* and temp, ph, pe, and mass of water for each line
|
|
2900
|
+
* of selected output.
|
|
2901
|
+
*/
|
|
2902
|
+
const char *sformat;
|
|
2903
|
+
const char *dformat;
|
|
2904
|
+
const char *gformat;
|
|
2905
|
+
int i;
|
|
2906
|
+
char token[MAX_LENGTH];
|
|
2907
|
+
|
|
2908
|
+
//if (punch.in == FALSE)
|
|
2909
|
+
// return (OK);
|
|
2910
|
+
if (!current_selected_output->Get_high_precision())
|
|
2911
|
+
{
|
|
2912
|
+
sformat = "%12s\t";
|
|
2913
|
+
dformat = "%12d\t";
|
|
2914
|
+
gformat = "%12g\t";
|
|
2915
|
+
}
|
|
2916
|
+
else
|
|
2917
|
+
{
|
|
2918
|
+
sformat = "%20s\t";
|
|
2919
|
+
dformat = "%20d\t";
|
|
2920
|
+
gformat = "%20g\t";
|
|
2921
|
+
}
|
|
2922
|
+
|
|
2923
|
+
/*
|
|
2924
|
+
* simulation or simul_tr
|
|
2925
|
+
*/
|
|
2926
|
+
|
|
2927
|
+
if (current_selected_output->Get_sim())
|
|
2928
|
+
{
|
|
2929
|
+
if (state != TRANSPORT && state != PHAST)
|
|
2930
|
+
{
|
|
2931
|
+
fpunchf(PHAST_NULL("sim"), dformat, simulation);
|
|
2932
|
+
}
|
|
2933
|
+
else
|
|
2934
|
+
{
|
|
2935
|
+
fpunchf(PHAST_NULL("sim"), dformat, simul_tr);
|
|
2936
|
+
}
|
|
2937
|
+
}
|
|
2938
|
+
if (current_selected_output->Get_state())
|
|
2939
|
+
{
|
|
2940
|
+
switch (state)
|
|
2941
|
+
{
|
|
2942
|
+
case 0:
|
|
2943
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, "init");
|
|
2944
|
+
break;
|
|
2945
|
+
case 1:
|
|
2946
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, "i_soln");
|
|
2947
|
+
break;
|
|
2948
|
+
case 2:
|
|
2949
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, "i_exch");
|
|
2950
|
+
break;
|
|
2951
|
+
case 3:
|
|
2952
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, "i_surf");
|
|
2953
|
+
break;
|
|
2954
|
+
case 4:
|
|
2955
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, "i_gas");
|
|
2956
|
+
break;
|
|
2957
|
+
case 5:
|
|
2958
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, "react");
|
|
2959
|
+
break;
|
|
2960
|
+
case 6:
|
|
2961
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, "inverse");
|
|
2962
|
+
break;
|
|
2963
|
+
case 7:
|
|
2964
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, "advect");
|
|
2965
|
+
break;
|
|
2966
|
+
case 8:
|
|
2967
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, "transp");
|
|
2968
|
+
break;
|
|
2969
|
+
default:
|
|
2970
|
+
Utilities::strcpy_safe(token, MAX_LENGTH, "unknown");
|
|
2971
|
+
break;
|
|
2972
|
+
}
|
|
2973
|
+
fpunchf(PHAST_NULL("state"), sformat, token);
|
|
2974
|
+
|
|
2975
|
+
}
|
|
2976
|
+
/*
|
|
2977
|
+
* solution number or cell number and time
|
|
2978
|
+
*/
|
|
2979
|
+
if (current_selected_output->Get_soln())
|
|
2980
|
+
{
|
|
2981
|
+
if (state == TRANSPORT || state == PHAST)
|
|
2982
|
+
{
|
|
2983
|
+
fpunchf(PHAST_NULL("soln"), dformat, cell);
|
|
2984
|
+
}
|
|
2985
|
+
else if (state == ADVECTION)
|
|
2986
|
+
{
|
|
2987
|
+
fpunchf(PHAST_NULL("soln"), dformat, use.Get_n_solution_user());
|
|
2988
|
+
}
|
|
2989
|
+
else if (state < REACTION)
|
|
2990
|
+
{
|
|
2991
|
+
fpunchf(PHAST_NULL("soln"), dformat, use.Get_solution_ptr()->Get_n_user());
|
|
2992
|
+
}
|
|
2993
|
+
else
|
|
2994
|
+
{
|
|
2995
|
+
if (use.Get_mix_in() == TRUE)
|
|
2996
|
+
{
|
|
2997
|
+
if (state != TRANSPORT)
|
|
2998
|
+
{
|
|
2999
|
+
fpunchf(PHAST_NULL("soln"), dformat, use.Get_n_mix_user_orig());
|
|
3000
|
+
}
|
|
3001
|
+
else
|
|
3002
|
+
{
|
|
3003
|
+
fpunchf(PHAST_NULL("soln"), dformat, use.Get_n_mix_user());
|
|
3004
|
+
}
|
|
3005
|
+
|
|
3006
|
+
}
|
|
3007
|
+
else
|
|
3008
|
+
{
|
|
3009
|
+
fpunchf(PHAST_NULL("soln"), dformat, use.Get_n_solution_user());
|
|
3010
|
+
}
|
|
3011
|
+
}
|
|
3012
|
+
}
|
|
3013
|
+
if (current_selected_output->Get_dist())
|
|
3014
|
+
{
|
|
3015
|
+
if (state == ADVECTION)
|
|
3016
|
+
{
|
|
3017
|
+
fpunchf(PHAST_NULL("dist_x"), gformat, (double)use.Get_n_solution_user());
|
|
3018
|
+
}
|
|
3019
|
+
else if (state == TRANSPORT)
|
|
3020
|
+
{
|
|
3021
|
+
fpunchf(PHAST_NULL("dist_x"), gformat,
|
|
3022
|
+
(double) cell_data[cell].mid_cell_x);
|
|
3023
|
+
}
|
|
3024
|
+
else
|
|
3025
|
+
{
|
|
3026
|
+
fpunchf(PHAST_NULL("dist_x"), gformat, (double)-99);
|
|
3027
|
+
}
|
|
3028
|
+
}
|
|
3029
|
+
if (current_selected_output->Get_time())
|
|
3030
|
+
{
|
|
3031
|
+
LDBLE reaction_time = kin_time_x;
|
|
3032
|
+
if (state == REACTION && incremental_reactions == TRUE
|
|
3033
|
+
&& use.Get_kinetics_ptr() != NULL)
|
|
3034
|
+
{
|
|
3035
|
+
if (!use.Get_kinetics_ptr()->Get_equalIncrements())
|
|
3036
|
+
{
|
|
3037
|
+
reaction_time = 0.0;
|
|
3038
|
+
for (i = 0; i < reaction_step; i++)
|
|
3039
|
+
{
|
|
3040
|
+
if (i < (int) use.Get_kinetics_ptr()->Get_steps().size())
|
|
3041
|
+
{
|
|
3042
|
+
reaction_time += use.Get_kinetics_ptr()->Get_steps()[i];
|
|
3043
|
+
}
|
|
3044
|
+
else
|
|
3045
|
+
{
|
|
3046
|
+
reaction_time +=
|
|
3047
|
+
use.Get_kinetics_ptr()->Get_steps().back();
|
|
3048
|
+
}
|
|
3049
|
+
}
|
|
3050
|
+
}
|
|
3051
|
+
else
|
|
3052
|
+
{
|
|
3053
|
+
if (reaction_step > use.Get_kinetics_ptr()->Get_count())
|
|
3054
|
+
{
|
|
3055
|
+
reaction_time = use.Get_kinetics_ptr()->Get_steps().front();
|
|
3056
|
+
}
|
|
3057
|
+
else
|
|
3058
|
+
{
|
|
3059
|
+
reaction_time =
|
|
3060
|
+
reaction_step * use.Get_kinetics_ptr()->Get_steps().front() /
|
|
3061
|
+
((LDBLE) (use.Get_kinetics_ptr()->Get_count()));
|
|
3062
|
+
}
|
|
3063
|
+
}
|
|
3064
|
+
}
|
|
3065
|
+
if (state == REACTION)
|
|
3066
|
+
{
|
|
3067
|
+
fpunchf(PHAST_NULL("time"), gformat, (double) reaction_time);
|
|
3068
|
+
}
|
|
3069
|
+
else if (state == TRANSPORT || state == PHAST)
|
|
3070
|
+
{
|
|
3071
|
+
fpunchf(PHAST_NULL("time"), gformat,
|
|
3072
|
+
(double) (initial_total_time + rate_sim_time));
|
|
3073
|
+
}
|
|
3074
|
+
else if (state == ADVECTION)
|
|
3075
|
+
{
|
|
3076
|
+
if (advection_kin_time_defined == TRUE)
|
|
3077
|
+
{
|
|
3078
|
+
fpunchf(PHAST_NULL("time"), gformat,
|
|
3079
|
+
(double) (initial_total_time + rate_sim_time));
|
|
3080
|
+
}
|
|
3081
|
+
else
|
|
3082
|
+
{
|
|
3083
|
+
fpunchf(PHAST_NULL("time"), gformat, (double)advection_step);
|
|
3084
|
+
}
|
|
3085
|
+
}
|
|
3086
|
+
else
|
|
3087
|
+
{
|
|
3088
|
+
fpunchf(PHAST_NULL("time"), gformat, (double)-99);
|
|
3089
|
+
}
|
|
3090
|
+
}
|
|
3091
|
+
|
|
3092
|
+
/*
|
|
3093
|
+
* reaction or transport step
|
|
3094
|
+
*/
|
|
3095
|
+
if (current_selected_output->Get_step())
|
|
3096
|
+
{
|
|
3097
|
+
if (state == REACTION)
|
|
3098
|
+
{
|
|
3099
|
+
fpunchf(PHAST_NULL("step"), dformat, reaction_step);
|
|
3100
|
+
}
|
|
3101
|
+
else if (state == ADVECTION)
|
|
3102
|
+
{
|
|
3103
|
+
fpunchf(PHAST_NULL("step"), dformat, advection_step);
|
|
3104
|
+
}
|
|
3105
|
+
else if (state == TRANSPORT)
|
|
3106
|
+
{
|
|
3107
|
+
fpunchf(PHAST_NULL("step"), dformat, transport_step);
|
|
3108
|
+
}
|
|
3109
|
+
else
|
|
3110
|
+
{
|
|
3111
|
+
fpunchf(PHAST_NULL("step"), dformat, -99);
|
|
3112
|
+
}
|
|
3113
|
+
}
|
|
3114
|
+
if (current_selected_output->Get_ph())
|
|
3115
|
+
{
|
|
3116
|
+
if (!current_selected_output->Get_high_precision())
|
|
3117
|
+
{
|
|
3118
|
+
fpunchf("pH", "%12g\t", (double) (-s_hplus->la));
|
|
3119
|
+
}
|
|
3120
|
+
else
|
|
3121
|
+
{
|
|
3122
|
+
fpunchf("pH", "%20.12e\t", (double) (-s_hplus->la));
|
|
3123
|
+
}
|
|
3124
|
+
}
|
|
3125
|
+
if (current_selected_output->Get_pe())
|
|
3126
|
+
{
|
|
3127
|
+
if (!current_selected_output->Get_high_precision())
|
|
3128
|
+
{
|
|
3129
|
+
fpunchf("pe", "%12g\t", (double) (-s_eminus->la));
|
|
3130
|
+
}
|
|
3131
|
+
else
|
|
3132
|
+
{
|
|
3133
|
+
fpunchf("pe", "%20.12e\t", (double) (-s_eminus->la));
|
|
3134
|
+
}
|
|
3135
|
+
}
|
|
3136
|
+
if (current_selected_output->Get_rxn())
|
|
3137
|
+
{
|
|
3138
|
+
if (state >= REACTION && use.Get_reaction_in() == TRUE)
|
|
3139
|
+
{
|
|
3140
|
+
if (!current_selected_output->Get_high_precision())
|
|
3141
|
+
{
|
|
3142
|
+
fpunchf("reaction", "%12.4e\t", (double) step_x);
|
|
3143
|
+
}
|
|
3144
|
+
else
|
|
3145
|
+
{
|
|
3146
|
+
fpunchf("reaction", "%20.12e\t", (double) step_x);
|
|
3147
|
+
}
|
|
3148
|
+
}
|
|
3149
|
+
else
|
|
3150
|
+
{
|
|
3151
|
+
if (!current_selected_output->Get_high_precision())
|
|
3152
|
+
{
|
|
3153
|
+
fpunchf("reaction", "%12d\t", -99);
|
|
3154
|
+
}
|
|
3155
|
+
else
|
|
3156
|
+
{
|
|
3157
|
+
fpunchf("reaction", "%20d\t", -99);
|
|
3158
|
+
}
|
|
3159
|
+
}
|
|
3160
|
+
}
|
|
3161
|
+
if (current_selected_output->Get_temp())
|
|
3162
|
+
{
|
|
3163
|
+
if (!current_selected_output->Get_high_precision())
|
|
3164
|
+
{
|
|
3165
|
+
fpunchf("temp(C)", "%12.3f\t", (double) tc_x);
|
|
3166
|
+
}
|
|
3167
|
+
else
|
|
3168
|
+
{
|
|
3169
|
+
fpunchf("temp(C)", "%20.12e\t", (double) tc_x);
|
|
3170
|
+
}
|
|
3171
|
+
}
|
|
3172
|
+
if (current_selected_output->Get_alk())
|
|
3173
|
+
{
|
|
3174
|
+
if (!current_selected_output->Get_high_precision())
|
|
3175
|
+
{
|
|
3176
|
+
fpunchf("Alk(eq/kgw)", "%12g\t",
|
|
3177
|
+
(double) (total_alkalinity / mass_water_aq_x));
|
|
3178
|
+
}
|
|
3179
|
+
else
|
|
3180
|
+
{
|
|
3181
|
+
fpunchf("Alk(eq/kgw)", "%20.12e\t",
|
|
3182
|
+
(double) (total_alkalinity / mass_water_aq_x));
|
|
3183
|
+
}
|
|
3184
|
+
}
|
|
3185
|
+
if (current_selected_output->Get_mu())
|
|
3186
|
+
{
|
|
3187
|
+
if (!current_selected_output->Get_high_precision())
|
|
3188
|
+
{
|
|
3189
|
+
fpunchf("mu", "%12g\t", (double) mu_x);
|
|
3190
|
+
}
|
|
3191
|
+
else
|
|
3192
|
+
{
|
|
3193
|
+
fpunchf("mu", "%20.12e\t", (double) mu_x);
|
|
3194
|
+
}
|
|
3195
|
+
}
|
|
3196
|
+
if (current_selected_output->Get_water())
|
|
3197
|
+
{
|
|
3198
|
+
if (!current_selected_output->Get_high_precision())
|
|
3199
|
+
{
|
|
3200
|
+
fpunchf("mass_H2O", "%12g\t", (double) mass_water_aq_x);
|
|
3201
|
+
}
|
|
3202
|
+
else
|
|
3203
|
+
{
|
|
3204
|
+
fpunchf("mass_H2O", "%20.12e\t", (double) mass_water_aq_x);
|
|
3205
|
+
}
|
|
3206
|
+
}
|
|
3207
|
+
if (current_selected_output->Get_charge_balance())
|
|
3208
|
+
{
|
|
3209
|
+
if (!current_selected_output->Get_high_precision())
|
|
3210
|
+
{
|
|
3211
|
+
fpunchf("charge(eq)", "%12g\t", (double) cb_x);
|
|
3212
|
+
}
|
|
3213
|
+
else
|
|
3214
|
+
{
|
|
3215
|
+
fpunchf("charge(eq)", "%20.12e\t", (double) cb_x);
|
|
3216
|
+
}
|
|
3217
|
+
}
|
|
3218
|
+
if (current_selected_output->Get_percent_error())
|
|
3219
|
+
{
|
|
3220
|
+
if (!current_selected_output->Get_high_precision())
|
|
3221
|
+
{
|
|
3222
|
+
fpunchf("pct_err", "%12g\t",
|
|
3223
|
+
(double) (100 * cb_x / total_ions_x));
|
|
3224
|
+
}
|
|
3225
|
+
else
|
|
3226
|
+
{
|
|
3227
|
+
fpunchf("pct_err", "%20.12e\t",
|
|
3228
|
+
(double) (100 * cb_x / total_ions_x));
|
|
3229
|
+
}
|
|
3230
|
+
}
|
|
3231
|
+
punch_flush();
|
|
3232
|
+
return (OK);
|
|
3233
|
+
}
|
|
3234
|
+
|
|
3235
|
+
#undef PHAST_NULL
|
|
3236
|
+
/* ---------------------------------------------------------------------- */
|
|
3237
|
+
int Phreeqc::
|
|
3238
|
+
punch_saturation_indices(void)
|
|
3239
|
+
/* ---------------------------------------------------------------------- */
|
|
3240
|
+
{
|
|
3241
|
+
/*
|
|
3242
|
+
* Prints saturation indices of selected phases
|
|
3243
|
+
*/
|
|
3244
|
+
//int i;
|
|
3245
|
+
LDBLE si, iap;
|
|
3246
|
+
class rxn_token *rxn_ptr;
|
|
3247
|
+
|
|
3248
|
+
for (size_t i = 0; i < current_selected_output->Get_si().size(); i++)
|
|
3249
|
+
{
|
|
3250
|
+
if (current_selected_output->Get_si()[i].second == NULL || ((class phase *) current_selected_output->Get_si()[i].second)->in == FALSE)
|
|
3251
|
+
{
|
|
3252
|
+
si = -999.999;
|
|
3253
|
+
}
|
|
3254
|
+
else
|
|
3255
|
+
{
|
|
3256
|
+
/*
|
|
3257
|
+
* Print saturation index
|
|
3258
|
+
*/
|
|
3259
|
+
iap = 0.0;
|
|
3260
|
+
for (rxn_ptr = &(((class phase *) current_selected_output->Get_si()[i].second)->rxn_x.token[0]) + 1;
|
|
3261
|
+
rxn_ptr->s != NULL; rxn_ptr++)
|
|
3262
|
+
{
|
|
3263
|
+
iap += rxn_ptr->s->la * rxn_ptr->coef;
|
|
3264
|
+
}
|
|
3265
|
+
si = -((class phase *) current_selected_output->Get_si()[i].second)->lk + iap;
|
|
3266
|
+
}
|
|
3267
|
+
if (!current_selected_output->Get_high_precision())
|
|
3268
|
+
{
|
|
3269
|
+
fpunchf(sformatf("si_%s", current_selected_output->Get_si()[i].first.c_str()), "%12.4f\t", (double) si);
|
|
3270
|
+
}
|
|
3271
|
+
else
|
|
3272
|
+
{
|
|
3273
|
+
fpunchf(sformatf("si_%s", current_selected_output->Get_si()[i].first.c_str()), "%20.12e\t", (double) si);
|
|
3274
|
+
}
|
|
3275
|
+
}
|
|
3276
|
+
return (OK);
|
|
3277
|
+
}
|
|
3278
|
+
/* ---------------------------------------------------------------------- */
|
|
3279
|
+
int Phreeqc::
|
|
3280
|
+
punch_kinetics(void)
|
|
3281
|
+
/* ---------------------------------------------------------------------- */
|
|
3282
|
+
{
|
|
3283
|
+
/*
|
|
3284
|
+
* prints kinetic reaction,
|
|
3285
|
+
* should be called only on final kinetic step
|
|
3286
|
+
*/
|
|
3287
|
+
cxxKinetics *kinetics_ptr;
|
|
3288
|
+
LDBLE moles, delta_moles;
|
|
3289
|
+
|
|
3290
|
+
kinetics_ptr = NULL;
|
|
3291
|
+
if (use.Get_kinetics_in() == TRUE)
|
|
3292
|
+
{
|
|
3293
|
+
if (state == TRANSPORT || state == PHAST || state == ADVECTION)
|
|
3294
|
+
{
|
|
3295
|
+
kinetics_ptr = Utilities::Rxn_find(Rxn_kinetics_map, use.Get_n_kinetics_user());
|
|
3296
|
+
}
|
|
3297
|
+
else
|
|
3298
|
+
{
|
|
3299
|
+
kinetics_ptr = Utilities::Rxn_find(Rxn_kinetics_map, -2);
|
|
3300
|
+
}
|
|
3301
|
+
}
|
|
3302
|
+
for (size_t i = 0; i < current_selected_output->Get_kinetics().size(); i++)
|
|
3303
|
+
{
|
|
3304
|
+
moles = 0.0;
|
|
3305
|
+
delta_moles = 0.0;
|
|
3306
|
+
if (kinetics_ptr != NULL)
|
|
3307
|
+
{
|
|
3308
|
+
for (size_t j = 0; j < kinetics_ptr->Get_kinetics_comps().size(); j++)
|
|
3309
|
+
{
|
|
3310
|
+
cxxKineticsComp * kinetics_comp_ptr = &(kinetics_ptr->Get_kinetics_comps()[j]);
|
|
3311
|
+
if (strcmp_nocase
|
|
3312
|
+
(current_selected_output->Get_kinetics()[i].first.c_str(),
|
|
3313
|
+
kinetics_comp_ptr->Get_rate_name().c_str()) == 0)
|
|
3314
|
+
{
|
|
3315
|
+
if (state != TRANSPORT && state != PHAST)
|
|
3316
|
+
{
|
|
3317
|
+
moles = kinetics_comp_ptr->Get_m();
|
|
3318
|
+
delta_moles = - kinetics_comp_ptr->Get_moles();
|
|
3319
|
+
}
|
|
3320
|
+
else
|
|
3321
|
+
{
|
|
3322
|
+
moles = kinetics_comp_ptr->Get_m();
|
|
3323
|
+
delta_moles =
|
|
3324
|
+
kinetics_comp_ptr->Get_m() -
|
|
3325
|
+
kinetics_comp_ptr->Get_initial_moles();
|
|
3326
|
+
}
|
|
3327
|
+
break;
|
|
3328
|
+
}
|
|
3329
|
+
}
|
|
3330
|
+
}
|
|
3331
|
+
if (!current_selected_output->Get_high_precision())
|
|
3332
|
+
{
|
|
3333
|
+
fpunchf(sformatf("k_%s", current_selected_output->Get_kinetics()[i].first.c_str()), "%12.4e\t",
|
|
3334
|
+
(double) moles);
|
|
3335
|
+
fpunchf(sformatf("dk_%s", current_selected_output->Get_kinetics()[i].first.c_str()), "%12.4e\t",
|
|
3336
|
+
(double) delta_moles);
|
|
3337
|
+
}
|
|
3338
|
+
else
|
|
3339
|
+
{
|
|
3340
|
+
fpunchf(sformatf("k_%s", current_selected_output->Get_kinetics()[i].first.c_str()), "%20.12e\t",
|
|
3341
|
+
(double) moles);
|
|
3342
|
+
fpunchf(sformatf("dk_%s", current_selected_output->Get_kinetics()[i].first.c_str()), "%20.12e\t",
|
|
3343
|
+
(double) delta_moles);
|
|
3344
|
+
}
|
|
3345
|
+
}
|
|
3346
|
+
return (OK);
|
|
3347
|
+
}
|
|
3348
|
+
/* ---------------------------------------------------------------------- */
|
|
3349
|
+
int Phreeqc::
|
|
3350
|
+
punch_user_punch(void)
|
|
3351
|
+
/* ---------------------------------------------------------------------- */
|
|
3352
|
+
{
|
|
3353
|
+
/*
|
|
3354
|
+
* Punch with user defined BASIC print routine
|
|
3355
|
+
*/
|
|
3356
|
+
char l_command[] = "run";
|
|
3357
|
+
|
|
3358
|
+
n_user_punch_index = 0;
|
|
3359
|
+
//if (punch.user_punch == FALSE)
|
|
3360
|
+
// return (OK);
|
|
3361
|
+
if (current_user_punch == NULL || !current_selected_output->Get_user_punch())
|
|
3362
|
+
return OK;
|
|
3363
|
+
|
|
3364
|
+
class rate * user_punch = current_user_punch->Get_rate();
|
|
3365
|
+
|
|
3366
|
+
if (user_punch->commands.c_str() == 0)
|
|
3367
|
+
return (OK);
|
|
3368
|
+
if (user_punch->new_def == TRUE)
|
|
3369
|
+
{
|
|
3370
|
+
if (basic_compile
|
|
3371
|
+
(user_punch->commands.c_str(), &user_punch->linebase,
|
|
3372
|
+
&user_punch->varbase, &user_punch->loopbase) != 0)
|
|
3373
|
+
{
|
|
3374
|
+
error_msg("Fatal Basic error in USER_PUNCH.", STOP);
|
|
3375
|
+
}
|
|
3376
|
+
user_punch->new_def = FALSE;
|
|
3377
|
+
}
|
|
3378
|
+
if (basic_run
|
|
3379
|
+
(l_command, user_punch->linebase, user_punch->varbase,
|
|
3380
|
+
user_punch->loopbase) != 0)
|
|
3381
|
+
{
|
|
3382
|
+
error_msg("Fatal Basic error in USER_PUNCH.", STOP);
|
|
3383
|
+
}
|
|
3384
|
+
return (OK);
|
|
3385
|
+
}
|
|
3386
|
+
|
|
3387
|
+
#if defined PHREEQ98
|
|
3388
|
+
/* ---------------------------------------------------------------------- */
|
|
3389
|
+
int Phreeqc::
|
|
3390
|
+
punch_user_graph(void)
|
|
3391
|
+
/* ---------------------------------------------------------------------- */
|
|
3392
|
+
{
|
|
3393
|
+
/*
|
|
3394
|
+
* Graph with user defined BASIC print routine
|
|
3395
|
+
*/
|
|
3396
|
+
char command[] = "run";
|
|
3397
|
+
|
|
3398
|
+
colnr = 0;
|
|
3399
|
+
/* if (pr.user_graph == FALSE || pr.all == FALSE) return(OK); */
|
|
3400
|
+
/* if (punch.user_punch == FALSE) return(OK); */
|
|
3401
|
+
/* if (punch.in == FALSE) return(OK); */
|
|
3402
|
+
if (user_graph->commands == NULL)
|
|
3403
|
+
return (OK);
|
|
3404
|
+
if (((state == INITIAL_SOLUTION) || (state == INITIAL_EXCHANGE)
|
|
3405
|
+
|| (state == INITIAL_SURFACE) || (state == INITIAL_GAS_PHASE))
|
|
3406
|
+
&& (graph_initial_solutions == FALSE))
|
|
3407
|
+
return (OK);
|
|
3408
|
+
if (FirstCallToUSER_GRAPH)
|
|
3409
|
+
AddSeries = TRUE;
|
|
3410
|
+
if (state == REACTION)
|
|
3411
|
+
{
|
|
3412
|
+
/*if (reaction_step == 1) AddSeries = TRUE;
|
|
3413
|
+
else AddSeries = FALSE; */
|
|
3414
|
+
if (reaction_step == 1 && !connect_simulations)
|
|
3415
|
+
AddSeries = TRUE;
|
|
3416
|
+
if (reaction_step > 1)
|
|
3417
|
+
AddSeries = FALSE;
|
|
3418
|
+
}
|
|
3419
|
+
if (state == ADVECTION)
|
|
3420
|
+
{
|
|
3421
|
+
if (advection_step == 0 && graph_initial_solutions == FALSE)
|
|
3422
|
+
return (OK);
|
|
3423
|
+
if (((chart_type == 1) && (advection_step == punch_ad_modulus)) ||
|
|
3424
|
+
((chart_type == 0) && (advection_step != prev_advection_step)))
|
|
3425
|
+
AddSeries = TRUE;
|
|
3426
|
+
else
|
|
3427
|
+
AddSeries = FALSE;
|
|
3428
|
+
}
|
|
3429
|
+
if (state == TRANSPORT)
|
|
3430
|
+
{
|
|
3431
|
+
if (transport_step == 0 && graph_initial_solutions == FALSE)
|
|
3432
|
+
return (OK);
|
|
3433
|
+
if (((chart_type == 1) && (transport_step == punch_modulus)) ||
|
|
3434
|
+
((chart_type == 0) && (transport_step != prev_transport_step)))
|
|
3435
|
+
AddSeries = TRUE;
|
|
3436
|
+
else
|
|
3437
|
+
AddSeries = FALSE;
|
|
3438
|
+
}
|
|
3439
|
+
if (user_graph->new_def == TRUE)
|
|
3440
|
+
{
|
|
3441
|
+
if (basic_compile
|
|
3442
|
+
(user_graph->commands, &user_graph->linebase,
|
|
3443
|
+
&user_graph->varbase, &user_graph->loopbase) != 0)
|
|
3444
|
+
{
|
|
3445
|
+
error_msg("Fatal Basic error in USER_GRAPH.", STOP);
|
|
3446
|
+
}
|
|
3447
|
+
user_graph->new_def = FALSE;
|
|
3448
|
+
}
|
|
3449
|
+
if (basic_run
|
|
3450
|
+
(command, user_graph->linebase, user_graph->varbase,
|
|
3451
|
+
user_graph->loopbase) != 0)
|
|
3452
|
+
{
|
|
3453
|
+
error_msg("Fatal Basic error in USER_GRAPH.", STOP);
|
|
3454
|
+
}
|
|
3455
|
+
if (state == ADVECTION)
|
|
3456
|
+
prev_advection_step = advection_step;
|
|
3457
|
+
if (state == TRANSPORT)
|
|
3458
|
+
prev_transport_step = transport_step;
|
|
3459
|
+
/*if (state == REACTION) prev_reaction_step = reaction_step; */
|
|
3460
|
+
|
|
3461
|
+
if (FirstCallToUSER_GRAPH)
|
|
3462
|
+
{
|
|
3463
|
+
start_chart(0);
|
|
3464
|
+
}
|
|
3465
|
+
|
|
3466
|
+
FirstCallToUSER_GRAPH = FALSE;
|
|
3467
|
+
|
|
3468
|
+
return (OK);
|
|
3469
|
+
}
|
|
3470
|
+
#endif
|
|
3471
|
+
#if defined(MULTICHART)
|
|
3472
|
+
/* ---------------------------------------------------------------------- */
|
|
3473
|
+
int Phreeqc::
|
|
3474
|
+
punch_user_graph(void)
|
|
3475
|
+
/* ---------------------------------------------------------------------- */
|
|
3476
|
+
{
|
|
3477
|
+
/*
|
|
3478
|
+
* Graph with user defined BASIC print routine
|
|
3479
|
+
*/
|
|
3480
|
+
char command[] = "run";
|
|
3481
|
+
ChartObject *chart = chart_handler.Get_current_chart();
|
|
3482
|
+
if (chart == NULL) return OK;
|
|
3483
|
+
|
|
3484
|
+
chart->Set_AddSeries(false);
|
|
3485
|
+
|
|
3486
|
+
if (chart->Get_rate_command_list().size() == 0)
|
|
3487
|
+
return (OK);
|
|
3488
|
+
|
|
3489
|
+
// Skip initial calculations if initial_solutions == false
|
|
3490
|
+
if (((state == INITIAL_SOLUTION) || (state == INITIAL_EXCHANGE)
|
|
3491
|
+
|| (state == INITIAL_SURFACE) || (state == INITIAL_GAS_PHASE))
|
|
3492
|
+
&& (chart->Get_graph_initial_solutions() == false))
|
|
3493
|
+
return (OK);
|
|
3494
|
+
|
|
3495
|
+
if (state == REACTION)
|
|
3496
|
+
{
|
|
3497
|
+
/*if (reaction_step == 1) AddSeries = TRUE;
|
|
3498
|
+
else AddSeries = FALSE; */
|
|
3499
|
+
if (reaction_step == 1)
|
|
3500
|
+
chart->Set_AddSeries(true);
|
|
3501
|
+
if (reaction_step > 1)
|
|
3502
|
+
chart->Set_AddSeries(false);
|
|
3503
|
+
}
|
|
3504
|
+
|
|
3505
|
+
if (state == ADVECTION)
|
|
3506
|
+
{
|
|
3507
|
+
|
|
3508
|
+
if (advection_step == 0 && chart->Get_graph_initial_solutions() == false)
|
|
3509
|
+
return (OK);
|
|
3510
|
+
if (
|
|
3511
|
+
((chart->Get_chart_type() == 1) && (advection_step == punch_ad_modulus)) ||
|
|
3512
|
+
((chart->Get_chart_type() == 0) && (advection_step != chart->Get_prev_advection_step()))
|
|
3513
|
+
)
|
|
3514
|
+
{
|
|
3515
|
+
chart->Set_AddSeries(true);
|
|
3516
|
+
}
|
|
3517
|
+
else
|
|
3518
|
+
chart->Set_AddSeries(false);
|
|
3519
|
+
}
|
|
3520
|
+
if (state == TRANSPORT)
|
|
3521
|
+
{
|
|
3522
|
+
if (transport_step == 0 && chart->Get_graph_initial_solutions() == FALSE)
|
|
3523
|
+
return (OK);
|
|
3524
|
+
if (
|
|
3525
|
+
((chart->Get_chart_type() == 1) && (transport_step == punch_modulus)) ||
|
|
3526
|
+
((chart->Get_chart_type() == 0) && (transport_step != chart->Get_prev_transport_step()))
|
|
3527
|
+
)
|
|
3528
|
+
{
|
|
3529
|
+
chart->Set_AddSeries(true);
|
|
3530
|
+
}
|
|
3531
|
+
else
|
|
3532
|
+
{
|
|
3533
|
+
chart->Set_AddSeries(false);
|
|
3534
|
+
}
|
|
3535
|
+
}
|
|
3536
|
+
|
|
3537
|
+
// From cmdplot_xy merged into transport and advection above
|
|
3538
|
+
|
|
3539
|
+
// From plotXY
|
|
3540
|
+
if (chart->Get_FirstCallToUSER_GRAPH())
|
|
3541
|
+
chart->Set_prev_sim_no(simulation);
|
|
3542
|
+
else
|
|
3543
|
+
{
|
|
3544
|
+
if (simulation != chart->Get_prev_sim_no())
|
|
3545
|
+
{
|
|
3546
|
+
chart->Set_AddSeries(true);
|
|
3547
|
+
}
|
|
3548
|
+
}
|
|
3549
|
+
chart->Set_prev_sim_no(simulation);
|
|
3550
|
+
if (chart->Get_AddSeries() && !chart->Get_connect_simulations())
|
|
3551
|
+
{
|
|
3552
|
+
chart->Add_new_series();
|
|
3553
|
+
}
|
|
3554
|
+
|
|
3555
|
+
chart->Set_colnr(chart->Get_ColumnOffset());
|
|
3556
|
+
chart->Initialize_graph_pts();
|
|
3557
|
+
if (chart->Get_rate_new_def())
|
|
3558
|
+
{
|
|
3559
|
+
if (basic_compile
|
|
3560
|
+
(chart->Get_user_graph()->commands.c_str(), &chart->Get_user_graph()->linebase,
|
|
3561
|
+
&chart->Get_user_graph()->varbase, &chart->Get_user_graph()->loopbase) != 0)
|
|
3562
|
+
{
|
|
3563
|
+
error_msg("Fatal Basic error in USER_GRAPH.", STOP);
|
|
3564
|
+
}
|
|
3565
|
+
chart->Set_rate_new_def(false);
|
|
3566
|
+
}
|
|
3567
|
+
|
|
3568
|
+
// basic_run calculates points for all graph and plotxy curves
|
|
3569
|
+
// colnr identifies the curve and is incremented as each Y/Y2 curve point is added
|
|
3570
|
+
if (basic_run
|
|
3571
|
+
(command, chart->Get_user_graph()->linebase,
|
|
3572
|
+
chart->Get_user_graph()->varbase, chart->Get_user_graph()->loopbase) != 0)
|
|
3573
|
+
{
|
|
3574
|
+
error_msg("Fatal Basic error in USER_GRAPH.", STOP);
|
|
3575
|
+
}
|
|
3576
|
+
chart->Finalize_graph_pts();
|
|
3577
|
+
|
|
3578
|
+
if (state == ADVECTION)
|
|
3579
|
+
chart->Set_prev_advection_step(advection_step);
|
|
3580
|
+
if (state == TRANSPORT)
|
|
3581
|
+
chart->Set_prev_transport_step(transport_step);
|
|
3582
|
+
|
|
3583
|
+
if (chart->Get_FirstCallToUSER_GRAPH())
|
|
3584
|
+
{
|
|
3585
|
+
chart->start_chart();
|
|
3586
|
+
}
|
|
3587
|
+
chart->Set_new_ug(false);
|
|
3588
|
+
|
|
3589
|
+
chart->Set_FirstCallToUSER_GRAPH(false);
|
|
3590
|
+
|
|
3591
|
+
return (OK);
|
|
3592
|
+
}
|
|
3593
|
+
#endif // MULTICHART
|
|
3594
|
+
|
|
3595
|
+
char * Phreeqc::
|
|
3596
|
+
sformatf(const char *format, ...)
|
|
3597
|
+
{
|
|
3598
|
+
bool success = false;
|
|
3599
|
+
do
|
|
3600
|
+
{
|
|
3601
|
+
va_list args;
|
|
3602
|
+
va_start(args, format);
|
|
3603
|
+
int j = vsnprintf(sformatf_buffer, sformatf_buffer_size, format, args);
|
|
3604
|
+
success = (j > 0 && j < (int) sformatf_buffer_size);
|
|
3605
|
+
va_end(args);
|
|
3606
|
+
if (!success)
|
|
3607
|
+
{
|
|
3608
|
+
sformatf_buffer_size *= 2;
|
|
3609
|
+
sformatf_buffer = (char *) PHRQ_realloc(sformatf_buffer, sformatf_buffer_size * sizeof(char));
|
|
3610
|
+
if (sformatf_buffer == NULL) malloc_error();
|
|
3611
|
+
}
|
|
3612
|
+
}
|
|
3613
|
+
while (!success);
|
|
3614
|
+
|
|
3615
|
+
return sformatf_buffer;
|
|
3616
|
+
}
|
|
3617
|
+
|
|
3618
|
+
/* ---------------------------------------------------------------------- */
|
|
3619
|
+
int Phreeqc::
|
|
3620
|
+
print_alkalinity(void)
|
|
3621
|
+
/* ---------------------------------------------------------------------- */
|
|
3622
|
+
{
|
|
3623
|
+
/*
|
|
3624
|
+
* Prints description of solution, uses array species_list for
|
|
3625
|
+
* order of aqueous species.
|
|
3626
|
+
*/
|
|
3627
|
+
int j;
|
|
3628
|
+
std::vector<class species_list> alk_list;
|
|
3629
|
+
LDBLE min;
|
|
3630
|
+
|
|
3631
|
+
if (pr.alkalinity == FALSE || pr.all == FALSE)
|
|
3632
|
+
return (OK);
|
|
3633
|
+
print_centered("Distribution of alkalinity");
|
|
3634
|
+
alk_list.clear();
|
|
3635
|
+
j = 0;
|
|
3636
|
+
for (size_t i = 0; i < this->s_x.size(); i++)
|
|
3637
|
+
{
|
|
3638
|
+
if (s_x[i]->alk == 0.0)
|
|
3639
|
+
continue;
|
|
3640
|
+
alk_list.resize(alk_list.size() + 1);
|
|
3641
|
+
alk_list[j].master_s = s_hplus;
|
|
3642
|
+
alk_list[j].s = s_x[i];
|
|
3643
|
+
alk_list[j].coef = s_x[i]->alk;
|
|
3644
|
+
j++;
|
|
3645
|
+
}
|
|
3646
|
+
min = fabs(censor * total_alkalinity / mass_water_aq_x);
|
|
3647
|
+
if (alk_list.size() > 0)
|
|
3648
|
+
{
|
|
3649
|
+
output_msg(sformatf("\t%26s%11.3e\n\n",
|
|
3650
|
+
"Total alkalinity (eq/kgw) = ",
|
|
3651
|
+
(double) (total_alkalinity / mass_water_aq_x)));
|
|
3652
|
+
output_msg(sformatf("\t%-15s%12s%12s%10s\n\n", "Species",
|
|
3653
|
+
"Alkalinity", "Molality", "Alk/Mol"));
|
|
3654
|
+
if (alk_list.size() > 1) qsort(&alk_list[0], alk_list.size(),
|
|
3655
|
+
(size_t) sizeof(class species_list), species_list_compare_alk);
|
|
3656
|
+
for (size_t i = 0; i < alk_list.size(); i++)
|
|
3657
|
+
{
|
|
3658
|
+
if (fabs(alk_list[i].s->alk * (alk_list[i].s->moles) /
|
|
3659
|
+
mass_water_aq_x) < min)
|
|
3660
|
+
continue;
|
|
3661
|
+
output_msg(sformatf("\t%-15s%12.3e%12.3e%10.2f\n",
|
|
3662
|
+
alk_list[i].s->name,
|
|
3663
|
+
(double) (alk_list[i].s->alk *
|
|
3664
|
+
(alk_list[i].s->moles) / mass_water_aq_x),
|
|
3665
|
+
(double) ((alk_list[i].s->moles) / mass_water_aq_x),
|
|
3666
|
+
(double) (alk_list[i].s->alk)));
|
|
3667
|
+
}
|
|
3668
|
+
}
|
|
3669
|
+
|
|
3670
|
+
output_msg(sformatf("\n"));
|
|
3671
|
+
return (OK);
|
|
3672
|
+
}
|
|
3673
|
+
|