py2ls 0.2.5.10__py3-none-any.whl → 0.2.5.14__py3-none-any.whl

py2ls/im2.py

@@ -0,0 +1,67 @@
+from .ips import *
+
+
+
+# to quick look at the patient info
+def get_patient(kw=None,type_=None,thr=5,columns=["sampleid","patientid","birth","experimentator","consent form","first","res","type"]):
+    def _get_patient(kw=None,type_=None):
+        if "aml" in type_.lower():
+            fpath=local_path(r'Q:\\IM\\AGLengerke\\Jeff\\Cell Bank\\AML Cells\\AML Data Collection Form.xlsx')
+            sheet_name=1
+            dir_aml=local_path(r"Q:\IM\AGLengerke\Lab\1_AML_Sample_Table\August_Updated_AML_Sample_Table.xlsx")
+            
+        else:
+            fpath=local_path(r"Q:\IM\Klinik_IM2\Car-T-cells\JW_Tabelle aller CAR-T-cell Patienten und Proben.xlsx")
+            sheet_name=0
+        try: 
+            df=fload(fpath=fpath,sheet_name=sheet_name,verbose=0)
+        except Exception as e:
+            print(e)
+        print()
+        if "aml" in type_.lower():
+            name_lists=df.iloc[:,0].tolist()
+            print("AML patients:")
+        else:
+            df["Name"]=df["Name"].apply(lambda x: str(x).strip().replace(" ",""))
+            df["Geb."]=df["Geb."].apply(lambda x: str2date(str(x),fmt="%d.%m.%y"))
+            name_lists=unique([n+"/"+d for n,d in zip(df["Name"], df["Geb."])], ascending=True )
+            print("Car-T patients:")
+            
+        list_=[]
+        for i  in name_lists: 
+            if kw.lower() in str(i).lower():
+                print(f"{i} => '{"A"+enpass(i,method="5d").upper()[:6]}'") 
+                list_.append(i) 
+        if "aml" in type_.lower(): 
+            pat_id_=["A"+enpass(i,method="5d").upper()[:6] for i in name_lists] 
+            pat_id_list=[] 
+            for i,j in zip(name_lists, pat_id_): 
+                if kw.upper() ==j:
+                    print(f"{i} => '{j}'")
+                    list_.append(f"{i} => '{j}'")
+                    pat_id_list.append(j)  
+        if 1 <= len(list_) <= thr: 
+            if "aml" in type_.lower(): 
+                print(f"\n\nfound {len(list_)}")
+                df_aml = fload(dir_aml, sheet_name=0, header=1)
+                idx_=1
+                for name_ in list_:
+                    if "=>" in name_:
+                        name_=ssplit(name_,by=" =>")[0].strip()
+                    print(f"{len(list_)}-{idx_}: {name_}")
+                    if columns is None: 
+                        display(df_aml.loc[df_aml["PatientID"]==("A"+enpass(name_,method="5d").upper()[:6])].iloc[:,:19])
+                    else:
+                        display(df_aml.loc[df_aml["PatientID"]==("A"+enpass(name_,method="5d").upper()[:6])].select(columns))
+                    idx_+=1 
+        return list_
+    res=[]
+    if kw is None:
+        kw=input("input any related keyword:   , dateformat: %")
+    kw=str(kw).replace(" ","").strip().lower()
+    if type_ is None:
+        for type_temp in ["aml","cart"]:
+           res.extend(_get_patient(kw=kw,type_=type_temp))
+    else:
+        res.extend(_get_patient(kw=kw,type_=type_))
+    return res