py2ls 0.2.4.9.7__py3-none-any.whl → 0.2.4.9.9__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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+ #### Nature Journal Matplotlib Template
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+ # Author: Tim Sit
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+ ## What is this?
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+ # This is matplotlib template for producing figures that imitate the plot style and colors
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+ # found in journals published by Nature Publishing Group.
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+
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+ ## Usage
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+
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+ # option (1): set all plots to have the same style
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+ # plt.style.use('nature.mplstyle')
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+ # option (2): specific usage for one plot:
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+ # with plt.style.context('nature.mplstyle'):
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+ # plt.plot([1, 2, 3])
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+
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+ # It is recommended to combine this style with the set_bounds function located
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+ # in the plot_utils folder, which automatically make spine bounds and tick marks more sensible
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+
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+ ## REFERENCES
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+ # Nature Color Palette: https://nanx.me/ggsci/reference/pal_npg.html
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+ # Note that this is based on the palette found in Nature Reviews Cancer.
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+
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+
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+ ##### CONFIGURATION BEGINS HERE
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+
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+ ## The default backend; one of GTK3Agg GTK3Cairo MacOSX Qt4Agg Qt5Agg TkAgg
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+ ## WX WXAgg Agg Cairo PS PDF SVG Template.
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+ ## You can also deploy your own backend outside of matplotlib by
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+ ## referring to the module name (which must be in the PYTHONPATH) as
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+ ## 'module://my_backend'.
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+ ##
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+ ## If you omit this parameter, the backend will be determined by fallback.
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+ #backend : Agg
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+
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+ ## Note that this can be overridden by the environment variable
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+ ## QT_API used by Enthought Tool Suite (ETS); valid values are
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+ ## "pyqt" and "pyside". The "pyqt" setting has the side effect of
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+ ## forcing the use of Version 2 API for QString and QVariant.
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+
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+ ## The port to use for the web server in the WebAgg backend.
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+ #webagg.port : 8988
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+
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+ ## The address on which the WebAgg web server should be reachable
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+ #webagg.address : 127.0.0.1
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+
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+ ## If webagg.port is unavailable, a number of other random ports will
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+ ## be tried until one that is available is found.
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+ #webagg.port_retries : 50
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+
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+ ## When True, open the webbrowser to the plot that is shown
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+ #webagg.open_in_browser : True
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+
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+ ## if you are running pyplot inside a GUI and your backend choice
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+ ## conflicts, we will automatically try to find a compatible one for
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+ ## you if backend_fallback is True
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+ #backend_fallback: True
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+
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+ #interactive : False
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+ #toolbar : toolbar2 ## None | toolbar2 ("classic" is deprecated)
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+ #timezone : UTC ## a pytz timezone string, e.g., US/Central or Europe/Paris
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+
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+ ## Where your matplotlib data lives if you installed to a non-default
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+ ## location. This is where the matplotlib fonts, bitmaps, etc reside
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+ #datapath : /home/jdhunter/mpldata
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+
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+
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+ #### LINES
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+ ## See http://matplotlib.org/api/artist_api.html#module-matplotlib.lines for more
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+ ## information on line properties.
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+ lines.linewidth : 2 ## line width in points
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+ lines.linestyle : - ## solid line
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+ #lines.color : C0 ## has no affect on plot(); see axes.prop_cycle
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+ #lines.marker : None ## the default marker
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+ lines.markerfacecolor : auto ## the default markerfacecolor
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+ lines.markeredgecolor : black ## the default markeredgecolor
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+ lines.markeredgewidth : 1 ## the line width around the marker symbol
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+ lines.markersize : 7 ## markersize, in points
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+ #lines.dash_joinstyle : round ## miter|round|bevel
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+ #lines.dash_capstyle : butt ## butt|round|projecting
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+ #lines.solid_joinstyle : round ## miter|round|bevel
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+ #lines.solid_capstyle : projecting ## butt|round|projecting
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+ #lines.antialiased : True ## render lines in antialiased (no jaggies)
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+
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+ ## The three standard dash patterns. These are scaled by the linewidth.
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+ #lines.dashed_pattern : 3.7, 1.6
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+ #lines.dashdot_pattern : 6.4, 1.6, 1, 1.6
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+ #lines.dotted_pattern : 1, 1.65
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+ #lines.scale_dashes : True
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+
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+ #markers.fillstyle: full ## full|left|right|bottom|top|none
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+
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+ #### PATCHES
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+ ## Patches are graphical objects that fill 2D space, like polygons or
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+ ## circles. See
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+ ## http://matplotlib.org/api/artist_api.html#module-matplotlib.patches
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+ ## information on patch properties
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+ patch.linewidth : 1 ## edge width in points.
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+ patch.facecolor : 000000
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+ patch.edgecolor : black ## if forced, or patch is not filled
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+ patch.force_edgecolor : True ## True to always use edgecolor
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+ #patch.antialiased : True ## render patches in antialiased (no jaggies)
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+
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+ #### HATCHES (lines that surround points)
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+ hatch.color : black
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+ hatch.linewidth : 1
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+
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+ #### Boxplot
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+ boxplot.notch : False
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+ #boxplot.vertical : True
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+ #boxplot.whiskers : 1.5
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+ # boxplot.bootstrap : None
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+ boxplot.patchartist : True
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+ #boxplot.showmeans : False
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+ #boxplot.showcaps : True
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+ #boxplot.showbox : True
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+ #boxplot.showfliers : True
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+ #boxplot.meanline : False
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+
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+ boxplot.flierprops.color : C0
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+ boxplot.flierprops.marker : o
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+ boxplot.flierprops.markerfacecolor : auto
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+ boxplot.flierprops.markeredgecolor : white
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+ boxplot.flierprops.markersize : 7
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+ boxplot.flierprops.linestyle : none
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+ boxplot.flierprops.linewidth : 1.0
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+
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+ boxplot.boxprops.color : 9ae1f9
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+ boxplot.boxprops.linewidth : 0
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+ boxplot.boxprops.linestyle : -
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+
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+ boxplot.whiskerprops.color : C0
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+ boxplot.whiskerprops.linewidth : 1.0
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+ boxplot.whiskerprops.linestyle : -
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+
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+ boxplot.capprops.color : C0
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+ boxplot.capprops.linewidth : 1.0
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+ boxplot.capprops.linestyle : -
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+
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+ boxplot.medianprops.color : 9ae1f9
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+ boxplot.medianprops.linewidth : 1
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+ boxplot.medianprops.linestyle : -
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+
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+ boxplot.meanprops.color : C1
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+ boxplot.meanprops.marker : ^
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+ boxplot.meanprops.markerfacecolor : C1
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+ boxplot.meanprops.markeredgecolor : C1
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+ boxplot.meanprops.markersize : 7
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+ boxplot.meanprops.linestyle : --
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+ boxplot.meanprops.linewidth : 1.0
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+
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+
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+
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+ #### FONT
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+
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+ ## font properties used by text.Text. See
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+ ## http://matplotlib.org/api/font_manager_api.html for more
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+ ## information on font properties. The 6 font properties used for font
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+ ## matching are given below with their default values.
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+ ##
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+ ## The font.family property has five values: 'serif' (e.g., Times),
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+ ## 'sans-serif' (e.g., Helvetica), 'cursive' (e.g., Zapf-Chancery),
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+ ## 'fantasy' (e.g., Western), and 'monospace' (e.g., Courier). Each of
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+ ## these font families has a default list of font names in decreasing
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+ ## order of priority associated with them. When text.usetex is False,
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+ ## font.family may also be one or more concrete font names.
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+ ##
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+ ## The font.style property has three values: normal (or roman), italic
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+ ## or oblique. The oblique style will be used for italic, if it is not
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+ ## present.
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+ ##
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+ ## The font.variant property has two values: normal or small-caps. For
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+ ## TrueType fonts, which are scalable fonts, small-caps is equivalent
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+ ## to using a font size of 'smaller', or about 83%% of the current font
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+ ## size.
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+ ##
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+ ## The font.weight property has effectively 13 values: normal, bold,
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+ ## bolder, lighter, 100, 200, 300, ..., 900. Normal is the same as
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+ ## 400, and bold is 700. bolder and lighter are relative values with
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+ ## respect to the current weight.
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+ ##
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+ ## The font.stretch property has 11 values: ultra-condensed,
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+ ## extra-condensed, condensed, semi-condensed, normal, semi-expanded,
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+ ## expanded, extra-expanded, ultra-expanded, wider, and narrower. This
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+ ## property is not currently implemented.
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+ ##
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+ ## The font.size property is the default font size for text, given in pts.
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+ ## 10 pt is the standard value.
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+
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+ font.family : sans-serif
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+ font.style : normal
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+ #font.variant : normal
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+ #font.weight : normal
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+ #font.stretch : normal
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+ ## note that font.size controls default text sizes. To configure
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+ ## special text sizes tick labels, axes, labels, title, etc, see the rc
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+ ## settings for axes and ticks. Special text sizes can be defined
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+ ## relative to font.size, using the following values: xx-small, x-small,
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+ ## small, medium, large, x-large, xx-large, larger, or smaller
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+ font.size : 10.0
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+ #font.serif : DejaVu Serif, Bitstream Vera Serif, Computer Modern Roman, New Century Schoolbook, Century Schoolbook L, Utopia, ITC Bookman, Bookman, Nimbus Roman No9 L, Times New Roman, Times, Palatino, Charter, serif
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+ font.sans-serif : Helvetica, Computer Modern Sans Serif, DejaVu Sans, Bitstream Vera Sans, Lucida Grande, Verdana, Geneva, Lucid, Arial, Avant Garde, sans-serif
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+ #font.cursive : Apple Chancery, Textile, Zapf Chancery, Sand, Script MT, Felipa, cursive
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+ #font.fantasy : Comic Sans MS, Chicago, Charcoal, ImpactWestern, Humor Sans, xkcd, fantasy
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+ #font.monospace : DejaVu Sans Mono, Bitstream Vera Sans Mono, Computer Modern Typewriter, Andale Mono, Nimbus Mono L, Courier New, Courier, Fixed, Terminal, monospace
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+
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+ #### TEXT
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+ ## text properties used by text.Text. See
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+ ## http://matplotlib.org/api/artist_api.html#module-matplotlib.text for more
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+ ## information on text properties
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+ text.color : 000000
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+
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+ #### LaTeX customizations. See http://wiki.scipy.org/Cookbook/Matplotlib/UsingTex
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+ text.usetex : False ## use latex for all text handling. The following fonts
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+ ## are supported through the usual rc parameter settings:
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+ ## new century schoolbook, bookman, times, palatino,
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+ ## zapf chancery, charter, serif, sans-serif, helvetica,
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+ ## avant garde, courier, monospace, computer modern roman,
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+ ## computer modern sans serif, computer modern typewriter
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+ ## If another font is desired which can loaded using the
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+ ## LaTeX \usepackage command, please inquire at the
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+ ## matplotlib mailing list
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+ #text.latex.preamble : ## IMPROPER USE OF THIS FEATURE WILL LEAD TO LATEX FAILURES
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+ ## AND IS THEREFORE UNSUPPORTED. PLEASE DO NOT ASK FOR HELP
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+ ## IF THIS FEATURE DOES NOT DO WHAT YOU EXPECT IT TO.
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+ ## preamble is a comma separated list of LaTeX statements
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+ ## that are included in the LaTeX document preamble.
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+ ## An example:
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+ ## text.latex.preamble : \usepackage{bm},\usepackage{euler}
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+ ## The following packages are always loaded with usetex, so
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+ ## beware of package collisions: color, geometry, graphicx,
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+ ## type1cm, textcomp. Adobe Postscript (PSSNFS) font packages
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+ ## may also be loaded, depending on your font settings
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+ #text.latex.preview : False
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+
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+ #text.hinting : auto ## May be one of the following:
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+ ## none: Perform no hinting
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+ ## auto: Use FreeType's autohinter
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+ ## native: Use the hinting information in the
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+ # font file, if available, and if your
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+ # FreeType library supports it
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+ ## either: Use the native hinting information,
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+ # or the autohinter if none is available.
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+ ## For backward compatibility, this value may also be
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+ ## True === 'auto' or False === 'none'.
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+ #text.hinting_factor : 8 ## Specifies the amount of softness for hinting in the
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+ ## horizontal direction. A value of 1 will hint to full
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+ ## pixels. A value of 2 will hint to half pixels etc.
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+ #text.antialiased : True ## If True (default), the text will be antialiased.
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+ ## This only affects the Agg backend.
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+
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+ ## The following settings allow you to select the fonts in math mode.
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+ ## They map from a TeX font name to a fontconfig font pattern.
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+ ## These settings are only used if mathtext.fontset is 'custom'.
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+ ## Note that this "custom" mode is unsupported and may go away in the
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+ ## future.
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+ #mathtext.cal : cursive
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+ #mathtext.rm : sans
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+ #mathtext.tt : monospace
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+ #mathtext.it : sans:italic
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+ #mathtext.bf : sans:bold
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+ #mathtext.sf : sans
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+ #mathtext.fontset : dejavusans ## Should be 'dejavusans' (default),
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+ ## 'dejavuserif', 'cm' (Computer Modern), 'stix',
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+ ## 'stixsans' or 'custom'
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+ #mathtext.fallback_to_cm : True ## When True, use symbols from the Computer Modern
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+ ## fonts when a symbol can not be found in one of
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+ ## the custom math fonts.
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+ #mathtext.default : it ## The default font to use for math.
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+ ## Can be any of the LaTeX font names, including
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+ ## the special name "regular" for the same font
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+ ## used in regular text.
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+
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+ #### AXES
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+ ## default face and edge color, default tick sizes,
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+ ## default fontsizes for ticklabels, and so on. See
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+ ## http://matplotlib.org/api/axes_api.html#module-matplotlib.axes
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+ axes.facecolor : white ## axes background color
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+ axes.edgecolor : 000000 ## axes edge color
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+ axes.linewidth : 1.2 ## edge linewidth
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+ axes.grid : False ## display grid or not
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+ axes.grid.axis : both ## which axis the grid should apply to
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+ axes.grid.which : major ## gridlines at major, minor or both ticks
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+ axes.titlesize : 18 ## fontsize of the axes title
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+ axes.titleweight : normal ## font weight of title
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+ #axes.titlepad : 6.0 ## pad between axes and title in points
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+ axes.labelsize : 14 ## fontsize of the x any y labels
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+ axes.labelpad : 4.0 ## space between label and axis
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+ #axes.labelweight : normal ## weight of the x and y labels
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+ axes.labelcolor : 000000
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+ axes.axisbelow : line ## draw axis gridlines and ticks below
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+ ## patches (True); above patches but below
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+ ## lines ('line'); or above all (False)
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+ #axes.formatter.limits : -7, 7 ## use scientific notation if log10
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+ ## of the axis range is smaller than the
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+ ## first or larger than the second
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+ axes.formatter.use_locale : False ## When True, format tick labels
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+ ## according to the user's locale.
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+ ## For example, use ',' as a decimal
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+ ## separator in the fr_FR locale.
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+ #axes.formatter.use_mathtext : False ## When True, use mathtext for scientific
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+ ## notation.
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+ #axes.formatter.min_exponent: 0 ## minimum exponent to format in scientific notation
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+ axes.formatter.useoffset : True ## If True, the tick label formatter
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+ ## will default to labeling ticks relative
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+ ## to an offset when the data range is
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+ ## small compared to the minimum absolute
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+ ## value of the data.
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+ #axes.formatter.offset_threshold : 4 ## When useoffset is True, the offset
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+ ## will be used when it can remove
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+ ## at least this number of significant
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+ ## digits from tick labels.
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+ # AXES SPINE
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+ # TODO: need to limit axis spine to the last tick mark
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+ # TODO: the above can be done by setting ax.spines['left'].set_bounds(lower_limit, upper_limit),
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+ # but needs to be some automated way to do this
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+ axes.spines.left : True ## display axis spines
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+ axes.spines.bottom : True
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+ axes.spines.top : False
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+ axes.spines.right : False
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+ #axes.unicode_minus : True ## use unicode for the minus symbol
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+ ## rather than hyphen. See
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+ ## http://en.wikipedia.org/wiki/Plus_and_minus_signs#Character_codes
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+ axes.prop_cycle : cycler('color', ['E64B35', '4DBBD5', '00A087', '3C5488', 'F39B7F', '8491B4', '91D1C2FF', 'DC0000', '7E6148', 'B09C85'])
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+ ## color cycle for plot lines as list of string
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+ ## colorspecs: single letter, long name, or web-style hex
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+ ## Note the use of string escapes here ('1f77b4', instead of 1f77b4)
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+ ## as opposed to the rest of this file.
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+ axes.autolimit_mode : data ## How to scale axes limits to the data.
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+ ## Use "data" to use data limits, plus some margin
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+ ## Use "round_numbers" move to the nearest "round" number
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+ #axes.xmargin : .05 ## x margin. See `axes.Axes.margins`
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+ #axes.ymargin : .05 ## y margin See `axes.Axes.margins`
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+ #polaraxes.grid : True ## display grid on polar axes
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+ #axes3d.grid : True ## display grid on 3d axes
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+
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+ #### DATES
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+ ## These control the default format strings used in AutoDateFormatter.
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+ ## Any valid format datetime format string can be used (see the python
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+ ## `datetime` for details). For example using '%%x' will use the locale date representation
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+ ## '%%X' will use the locale time representation and '%%c' will use the full locale datetime
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+ ## representation.
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+ ## These values map to the scales:
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+ ## {'year': 365, 'month': 30, 'day': 1, 'hour': 1/24, 'minute': 1 / (24 * 60)}
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+
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+ #date.autoformatter.year : %Y
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+ #date.autoformatter.month : %Y-%m
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+ #date.autoformatter.day : %Y-%m-%d
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+ #date.autoformatter.hour : %m-%d %H
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+ #date.autoformatter.minute : %d %H:%M
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+ #date.autoformatter.second : %H:%M:%S
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+ #date.autoformatter.microsecond : %M:%S.%f
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+
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+ #### TICKS
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+ ## see http://matplotlib.org/api/axis_api.html#matplotlib.axis.Tick
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+ xtick.top : False ## draw ticks on the top side
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+ xtick.bottom : True ## draw ticks on the bottom side
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+ xtick.labeltop : False ## draw label on the top
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+ xtick.labelbottom : True ## draw label on the bottom
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+ xtick.major.size : 8.25 ## major tick size in points
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+ xtick.minor.size : 2 ## minor tick size in points
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+ xtick.major.width : 1.4 ## major tick width in points
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+ xtick.minor.width : 0.6 ## minor tick width in points
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+ xtick.major.pad : 3.5 ## distance to major tick label in points
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+ xtick.minor.pad : 3.4 ## distance to the minor tick label in points
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+ xtick.color : 000000 ## color of the tick labels
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+ xtick.labelsize : 12 ## fontsize of the tick labels
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+ xtick.direction : out ## direction: in, out, or inout
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+ xtick.minor.visible : False ## visibility of minor ticks on x-axis
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+ xtick.major.top : False ## draw x axis top major ticks
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+ xtick.major.bottom : True ## draw x axis bottom major ticks
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+ xtick.minor.top : False ## draw x axis top minor ticks
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+ xtick.minor.bottom : False ## draw x axis bottom minor ticks
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+ xtick.alignment : center ## alignment of xticks
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+
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+ ytick.left : True ## draw ticks on the left side
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+ ytick.right : False ## draw ticks on the right side
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+ ytick.labelleft : True ## draw tick labels on the left side
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+ ytick.labelright : False ## draw tick labels on the right side
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+ ytick.major.size : 8.25 ## major tick size in points
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+ ytick.minor.size : 2 ## minor tick size in points
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+ ytick.major.width : 1.4 ## major tick width in points
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+ ytick.minor.width : 0.6 ## minor tick width in points
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+ ytick.major.pad : 3.5 ## distance to major tick label in points
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+ ytick.minor.pad : 3.4 ## distance to the minor tick label in points
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+ ytick.color : 000000 ## color of the tick labels
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+ ytick.labelsize : 12 ## fontsize of the tick labels
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+ ytick.direction : out ## direction: in, out, or inout
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+ ytick.minor.visible : False ## visibility of minor ticks on y-axis
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+ ytick.major.left : True ## draw y axis left major ticks
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+ ytick.major.right : False ## draw y axis right major ticks
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+ ytick.minor.left : True ## draw y axis left minor ticks
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+ ytick.minor.right : False ## draw y axis right minor ticks
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+ ytick.alignment : center_baseline ## alignment of yticks
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+
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+ #### GRIDS
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+ grid.color : 93939c ## grid color
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+ grid.linestyle : -- ## solid
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+ grid.linewidth : 0.8 ## in points
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+ grid.alpha : 0.2 ## transparency, between 0.0 and 1.0
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+
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+ #### Legend
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+ legend.loc : best
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+ legend.frameon : False ## if True, draw the legend on a background patch
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+ legend.framealpha : 0.8 ## legend patch transparency
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+ legend.facecolor : inherit ## inherit from axes.facecolor; or color spec, options: inherit
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+ legend.edgecolor : 0.8 ## background patch boundary color
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+ legend.fancybox : False ## if True, use a rounded box for the
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+ ## legend background, else a rectangle
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+ legend.shadow : False ## if True, give background a shadow effect
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+ #legend.numpoints : 1 ## the number of marker points in the legend line
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+ #legend.scatterpoints : 1 ## number of scatter points
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+ #legend.markerscale : 1.0 ## the relative size of legend markers vs. original
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+ #legend.fontsize : medium
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+ #legend.title_fontsize : None ## None sets to the same as the default axes.
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+ ## Dimensions as fraction of fontsize:
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+ legend.borderpad : 0.4 ## border whitespace
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+ #legend.labelspacing : 0.5 ## the vertical space between the legend entries
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+ #legend.handlelength : 2.0 ## the length of the legend lines
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+ #legend.handleheight : 0.7 ## the height of the legend handle
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+ #legend.handletextpad : 0.8 ## the space between the legend line and legend text
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+ #legend.borderaxespad : 0.5 ## the border between the axes and legend edge
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+ #legend.columnspacing : 2.0 ## column separation
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+
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+ #### FIGURE
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+ ## See http://matplotlib.org/api/figure_api.html#matplotlib.figure.Figure
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+ #figure.titlesize : large ## size of the figure title (Figure.suptitle())
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+ #figure.titleweight : normal ## weight of the figure title
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+ #figure.figsize : 6.4, 4.8 ## figure size in inches
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+ figure.dpi : 300 ## figure dots per inch
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+ figure.facecolor : white ## figure facecolor
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+ figure.edgecolor : white ## figure edgecolor
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+ figure.frameon : False ## enable figure frame
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+ #figure.max_open_warning : 20 ## The maximum number of figures to open through
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+ ## the pyplot interface before emitting a warning.
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+ ## If less than one this feature is disabled.
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+ ## The figure subplot parameters. All dimensions are a fraction of the
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+ #figure.subplot.left : 0.125 ## the left side of the subplots of the figure
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+ #figure.subplot.right : 0.9 ## the right side of the subplots of the figure
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+ #figure.subplot.bottom : 0.11 ## the bottom of the subplots of the figure
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+ #figure.subplot.top : 0.88 ## the top of the subplots of the figure
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+ #figure.subplot.wspace : 0.2 ## the amount of width reserved for space between subplots,
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+ ## expressed as a fraction of the average axis width
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+ #figure.subplot.hspace : 0.2 ## the amount of height reserved for space between subplots,
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+ ## expressed as a fraction of the average axis height
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+
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+ ## Figure layout
446
+ #figure.autolayout : False ## When True, automatically adjust subplot
447
+ ## parameters to make the plot fit the figure
448
+ ## using `tight_layout`
449
+ #figure.constrained_layout.use: False ## When True, automatically make plot
450
+ ## elements fit on the figure. (Not compatible
451
+ ## with `autolayout`, above).
452
+ #figure.constrained_layout.h_pad : 0.04167 ## Padding around axes objects. Float representing
453
+ #figure.constrained_layout.w_pad : 0.04167 ## inches. Default is 3./72. inches (3 pts)
454
+ #figure.constrained_layout.hspace : 0.02 ## Space between subplot groups. Float representing
455
+ #figure.constrained_layout.wspace : 0.02 ## a fraction of the subplot widths being separated.
456
+
457
+ #### IMAGES
458
+ #image.aspect : equal ## equal | auto | a number
459
+ #image.interpolation : nearest ## see help(imshow) for options
460
+ #image.cmap : viridis ## A colormap name, gray etc...
461
+ #image.lut : 256 ## the size of the colormap lookup table
462
+ #image.origin : upper ## lower | upper
463
+ #image.resample : True
464
+ #image.composite_image : True ## When True, all the images on a set of axes are
465
+ ## combined into a single composite image before
466
+ ## saving a figure as a vector graphics file,
467
+ ## such as a PDF.
468
+
469
+ #### CONTOUR PLOTS
470
+ #contour.negative_linestyle : dashed ## string or on-off ink sequence
471
+ #contour.corner_mask : True ## True | False | legacy
472
+
473
+ #### ERRORBAR PLOTS
474
+ #errorbar.capsize : 0 ## length of end cap on error bars in pixels
475
+
476
+ #### HISTOGRAM PLOTS
477
+ #hist.bins : 10 ## The default number of histogram bins.
478
+ ## If Numpy 1.11 or later is
479
+ ## installed, may also be `auto`
480
+
481
+ #### SCATTER PLOTS
482
+ scatter.marker : o ## The default marker type for scatter plots.
483
+ scatter.edgecolors : 000000 ## The default edge colors for scatter plots.
484
+ ## Keyword options: 'face'
485
+
486
+
487
+ #### Agg rendering
488
+ #### Warning: experimental, 2008/10/10
489
+ #agg.path.chunksize : 0 ## 0 to disable; values in the range
490
+ ## 10000 to 100000 can improve speed slightly
491
+ ## and prevent an Agg rendering failure
492
+ ## when plotting very large data sets,
493
+ ## especially if they are very gappy.
494
+ ## It may cause minor artifacts, though.
495
+ ## A value of 20000 is probably a good
496
+ ## starting point.
497
+ #### PATHS
498
+ #path.simplify : True ## When True, simplify paths by removing "invisible"
499
+ ## points to reduce file size and increase rendering
500
+ ## speed
501
+ #path.simplify_threshold : 0.111111111111 ## The threshold of similarity below which
502
+ ## vertices will be removed in the
503
+ ## simplification process
504
+ #path.snap : True ## When True, rectilinear axis-aligned paths will be snapped to
505
+ ## the nearest pixel when certain criteria are met. When False,
506
+ ## paths will never be snapped.
507
+ #path.sketch : None ## May be none, or a 3-tuple of the form (scale, length,
508
+ ## randomness).
509
+ ## *scale* is the amplitude of the wiggle
510
+ ## perpendicular to the line (in pixels). *length*
511
+ ## is the length of the wiggle along the line (in
512
+ ## pixels). *randomness* is the factor by which
513
+ ## the length is randomly scaled.
514
+ #path.effects : [] ##
515
+
516
+ #### SAVING FIGURES
517
+ ## the default savefig params can be different from the display params
518
+ ## e.g., you may want a higher resolution, or to make the figure
519
+ ## background white
520
+ #savefig.dpi : figure ## figure dots per inch or 'figure'
521
+ #savefig.facecolor : white ## figure facecolor when saving
522
+ #savefig.edgecolor : white ## figure edgecolor when saving
523
+ #savefig.format : png ## png, ps, pdf, svg
524
+ #savefig.bbox : standard ## 'tight' or 'standard'.
525
+ ## 'tight' is incompatible with pipe-based animation
526
+ ## backends but will workd with temporary file based ones:
527
+ ## e.g. setting animation.writer to ffmpeg will not work,
528
+ ## use ffmpeg_file instead
529
+ #savefig.pad_inches : 0.1 ## Padding to be used when bbox is set to 'tight'
530
+ #savefig.jpeg_quality: 95 ## when a jpeg is saved, the default quality parameter.
531
+ #savefig.directory : ~ ## default directory in savefig dialog box,
532
+ ## leave empty to always use current working directory
533
+ #savefig.transparent : False ## setting that controls whether figures are saved with a
534
+ ## transparent background by default
535
+ #savefig.frameon : True ## enable frame of figure when saving
536
+ #savefig.orientation : portrait ## Orientation of saved figure
537
+
538
+ ### tk backend params
539
+ #tk.window_focus : False ## Maintain shell focus for TkAgg
540
+
541
+ ### ps backend params
542
+ #ps.papersize : letter ## auto, letter, legal, ledger, A0-A10, B0-B10
543
+ #ps.useafm : False ## use of afm fonts, results in small files
544
+ #ps.usedistiller : False ## can be: None, ghostscript or xpdf
545
+ ## Experimental: may produce smaller files.
546
+ ## xpdf intended for production of publication quality files,
547
+ ## but requires ghostscript, xpdf and ps2eps
548
+ #ps.distiller.res : 6000 ## dpi
549
+ #ps.fonttype : 3 ## Output Type 3 (Type3) or Type 42 (TrueType)
550
+
551
+ ### pdf backend params
552
+ #pdf.compression : 6 ## integer from 0 to 9
553
+ ## 0 disables compression (good for debugging)
554
+ #pdf.fonttype : 3 ## Output Type 3 (Type3) or Type 42 (TrueType)
555
+ #pdf.use14corefonts : False
556
+ #pdf.inheritcolor : False
557
+
558
+ ### svg backend params
559
+ #svg.image_inline : True ## write raster image data directly into the svg file
560
+ #svg.fonttype : path ## How to handle SVG fonts:
561
+ ## none: Assume fonts are installed on the machine where the SVG will be viewed.
562
+ ## path: Embed characters as paths -- supported by most SVG renderers
563
+ ## svgfont: Embed characters as SVG fonts -- supported only by Chrome,
564
+ ## Opera and Safari
565
+ #svg.hashsalt : None ## if not None, use this string as hash salt
566
+ ## instead of uuid4
567
+ ### pgf parameter
568
+ #pgf.rcfonts : True
569
+ #pgf.preamble :
570
+ #pgf.texsystem : xelatex
571
+
572
+ ### docstring params
573
+ ##docstring.hardcopy = False ## set this when you want to generate hardcopy docstring
574
+
575
+ ## Event keys to interact with figures/plots via keyboard.
576
+ ## Customize these settings according to your needs.
577
+ ## Leave the field(s) empty if you don't need a key-map. (i.e., fullscreen : '')
578
+ #keymap.fullscreen : f, ctrl+f ## toggling
579
+ #keymap.home : h, r, home ## home or reset mnemonic
580
+ #keymap.back : left, c, backspace ## forward / backward keys to enable
581
+ #keymap.forward : right, v ## left handed quick navigation
582
+ #keymap.pan : p ## pan mnemonic
583
+ #keymap.zoom : o ## zoom mnemonic
584
+ #keymap.save : s, ctrl+s ## saving current figure
585
+ #keymap.help : f1 ## display help about active tools
586
+ #keymap.quit : ctrl+w, cmd+w, q ## close the current figure
587
+ #keymap.quit_all : W, cmd+W, Q ## close all figures
588
+ #keymap.grid : g ## switching on/off major grids in current axes
589
+ #keymap.grid_minor : G ## switching on/off minor grids in current axes
590
+ #keymap.yscale : l ## toggle scaling of y-axes ('log'/'linear')
591
+ #keymap.xscale : k, L ## toggle scaling of x-axes ('log'/'linear')
592
+ #keymap.all_axes : a ## enable all axes
593
+ #keymap.copy : ctrl+c, cmd+c ## Copy figure to clipboard
594
+
595
+ ###ANIMATION settings
596
+ #animation.html : none ## How to display the animation as HTML in
597
+ ## the IPython notebook. 'html5' uses
598
+ ## HTML5 video tag; 'jshtml' creates a
599
+ ## Javascript animation
600
+ #animation.writer : ffmpeg ## MovieWriter 'backend' to use
601
+ #animation.codec : h264 ## Codec to use for writing movie
602
+ #animation.bitrate: -1 ## Controls size/quality tradeoff for movie.
603
+ ## -1 implies let utility auto-determine
604
+ #animation.frame_format: png ## Controls frame format used by temp files
605
+ #animation.html_args: ## Additional arguments to pass to html writer
606
+ #animation.ffmpeg_path: ffmpeg ## Path to ffmpeg binary. Without full path
607
+ ## $PATH is searched
608
+ #animation.ffmpeg_args: ## Additional arguments to pass to ffmpeg
609
+ #animation.avconv_path: avconv ## Path to avconv binary. Without full path
610
+ ## $PATH is searched
611
+ #animation.avconv_args: ## Additional arguments to pass to avconv
612
+ #animation.convert_path: convert ## Path to ImageMagick's convert binary.
613
+ ## On Windows use the full path since convert
614
+ ## is also the name of a system tool.
615
+ #animation.convert_args: ## Additional arguments to pass to convert
616
+ #animation.embed_limit : 20.0
@@ -0,0 +1,31 @@
1
+ # Matplotlib style for Nature journal figures.
2
+ # In general, they advocate for all fonts to be panel labels to be sans serif
3
+ # and all font sizes in a figure to be 7 pt and panel labels to be 8 pt bold.
4
+
5
+ # Figure size
6
+ figure.figsize : 3.3, 2.5 # max width is 3.5 for single column
7
+
8
+ # Font sizes
9
+ axes.labelsize: 7
10
+ xtick.labelsize: 7
11
+ ytick.labelsize: 7
12
+ legend.fontsize: 7
13
+ font.size: 7
14
+
15
+ # Font Family
16
+ font.family: sans-serif
17
+ font.sans-serif: DejaVu Sans, Arial, Helvetica, Lucida Grande, Verdana, Geneva, Lucid, Avant Garde, sans-serif
18
+ mathtext.fontset : dejavusans
19
+
20
+ # Set line widths
21
+ axes.linewidth : 0.5
22
+ grid.linewidth : 0.5
23
+ lines.linewidth : 1.
24
+ lines.markersize: 3
25
+
26
+ # Always save as 'tight'
27
+ # savefig.bbox : tight
28
+ # savefig.pad_inches : 0.01 # Use virtually all space when we specify figure dimensions
29
+
30
+ # LaTeX packages
31
+ text.latex.preamble : \usepackage{amsmath} \usepackage{amssymb} \usepackage{sfmath}
@@ -0,0 +1,10 @@
1
+ # Deactivate LaTeX
2
+ # and use mathtext
3
+
4
+ text.usetex : False
5
+
6
+ # Set fonts to be LaTeX defaults
7
+ font.serif : cmr10, Computer Modern Serif, DejaVu Serif
8
+ font.family : serif
9
+ axes.formatter.use_mathtext : True
10
+ mathtext.fontset : cm