py2ls 0.1.6.4__py3-none-any.whl → 0.1.6.7__py3-none-any.whl

py2ls/__init__.py

@@ -5,3 +5,4 @@ from .ips import *
 from .translator import *
 from .netfinder import *
 from .plot import *
+from .export_requirements import *

py2ls/export_requirements.py

@@ -0,0 +1,71 @@
+import os
+from datetime import datetime
+import subprocess
+import re
+
+def export_requirements(fpath="/Users/macjianfeng/Dropbox/github/python/py2ls/", exclude=["py2ls","jaraco"]):
+    """
+    Main function to generate a timestamped requirements file and convert it to Poetry dependencies.
+    """
+    if not fpath.endswith('/'):
+        fpath+='/'
+    with open(os.path.join(fpath,'pyproject.toml'),'r') as f:
+        txt=f.read()
+    txt_list = re.split('\n',txt)
+
+    idx_start=[i for i,item in enumerate(txt_list) if item.startswith('[tool.poetry.dependencies]')][0]+2
+    idx_stop=[i for i,item in enumerate(txt_list) if item.startswith('[build-system]')][0]
+
+    # keep the head info
+    txt_list_head=txt_list[:idx_start]
+    txt_list_tail=txt_list[idx_stop:]
+
+    # keep the tail info
+    txt_list_head=[i+"\n" for i in txt_list_head]
+    txt_list_tail=[i+"\n" for i in txt_list_tail]
+
+    # filename
+    current_time = datetime.now().strftime("%Y-%m-%d")
+    fpath_requirements = f"{fpath}requirements_{current_time}.txt"
+
+    os.makedirs(os.path.dirname(fpath_requirements), exist_ok=True)
+
+    # get the updated requirements.txt
+    try:
+        with open(fpath_requirements, 'w') as requirements_file:
+            subprocess.run(['pip', 'freeze'], stdout=requirements_file, check=True)
+        print(f"Requirements have been saved to {fpath_requirements}")
+    except subprocess.CalledProcessError as e:
+        print(f"An error occurred while creating the requirements file: {e}")
+        
+    # open the orgi toml file
+    try:
+        with open(fpath_requirements, 'r') as file:
+            txt = file.read()
+    except Exception as e:
+        print(f"An error occurred while reading the requirements file: {e}")
+
+    # convert to poetry
+    txt_corr=[]
+    for txt_ in re.split('\n', txt):
+        if len(txt_) <=40 and not txt_=='':
+            txt_corr.append(txt_.replace("==",' = "^')+'"\n')
+
+    # add a newline
+    txt_corr.append('\n')
+
+    # merge 
+    txt_corr_=[*txt_list_head, *txt_corr, *txt_list_tail]
+
+    # rm .txt
+    # os.remove(fpath_requirements)
+
+    # fsave
+    with open(f"{fpath}pyproject_{current_time}.toml", 'w') as f:
+        f.writelines(txt_corr_)
+
+def main():
+    export_requirements(fpath="/Users/macjianfeng/Dropbox/github/python/py2ls/")
+
+if __name__ == "__main__":
+    main()

py2ls/ips.py

@@ -71,7 +71,7 @@ def upgrade(module='py2ls'):
         subprocess.check_call([sys.executable, "-m", "pip", "install", "--upgrade", module])
     except subprocess.CalledProcessError as e:
         print(f"An error occurred while upgrading py2ls: {e}")
-upgrade()
+
 
 dir_save='/Users/macjianfeng/Dropbox/Downloads/'
 

py2ls/plot.py

@@ -3,6 +3,11 @@ import numpy as np
 from matplotlib.colors import to_rgba
 from scipy.stats import gaussian_kde
 
+import logging
+# Suppress INFO messages from fontTools
+logging.getLogger('fontTools').setLevel(logging.WARNING)
+
+
 def catplot(data, *args, **kwargs):
     """
     catplot(data, opt=None, ax=None)
@@ -19,7 +24,10 @@ def catplot(data, *args, **kwargs):
                     width=opt_b['x_width'], 
                     color=color,
                     edgecolor=opt_b['EdgeColor'], 
-                    alpha=opt_b['FaceAlpha'])
+                    alpha=opt_b['FaceAlpha'],
+                    linewidth=opt_b['LineWidth'],
+                    hatch=opt_b['hatch']
+                    )
 
     def plot_errors(data, data_m, opt_e, xloc, ax):
         error_positions = get_positions(xloc, opt_e['loc'], opt_e['x_width'], data.shape[0])
@@ -273,13 +281,15 @@ def catplot(data, *args, **kwargs):
     opt.setdefault('b', {})
     opt['b'].setdefault('go', 1) 
     opt['b'].setdefault('loc', 'c')
-    opt['b'].setdefault('EdgeColor', 'k')
+    opt['b'].setdefault('FaceColor', opt['c'])
     opt['b'].setdefault('FaceAlpha', 0.65)
+    opt['b'].setdefault('EdgeColor', 'k')
     opt['b'].setdefault('EdgeAlpha', 1)
     opt['b'].setdefault('LineStyle', '-')
+    opt['b'].setdefault('LineWidth', 0.8)
     opt['b'].setdefault('x_width', 0.5)
     opt['b'].setdefault('ShowBaseLine', 'off')
-    opt['b'].setdefault('FaceColor', opt['c'])
+    opt['b'].setdefault('hatch', None)
 
     opt.setdefault('e', {})
     opt['e'].setdefault('go', 1) 

{py2ls-0.1.6.4.dist-info → py2ls-0.1.6.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: py2ls
-Version: 0.1.6.4
+Version: 0.1.6.7
 Summary: py(thon)2(too)ls
 Author: Jianfeng
 Author-email: Jianfeng.Liu0413@gmail.com
@@ -9,39 +9,65 @@ Classifier: Programming Language :: Python :: 3
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
+Requires-Dist: CacheControl (>=0.13.1,<0.14.0)
+Requires-Dist: CairoSVG (>=2.7.1,<3.0.0)
 Requires-Dist: Deprecated (>=1.2.14,<2.0.0)
 Requires-Dist: Jinja2 (>=3.1.4,<4.0.0)
+Requires-Dist: Levenshtein (>=0.25.1,<0.26.0)
 Requires-Dist: MarkupSafe (>=2.1.5,<3.0.0)
+Requires-Dist: MechanicalSoup (>=1.3.0,<2.0.0)
 Requires-Dist: PyMatting (>=1.1.12,<2.0.0)
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 Requires-Dist: Pygments (>=2.18.0,<3.0.0)
 Requires-Dist: SciencePlots (>=2.1.1,<3.0.0)
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+Requires-Dist: XlsxWriter (>=3.2.0,<4.0.0)
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+Requires-Dist: auto-editor (>=24.24.1,<25.0.0)
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+Requires-Dist: bleach (>=6.1.0,<7.0.0)
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 Requires-Dist: chardet (>=3.0.4,<4.0.0)
 Requires-Dist: charset-normalizer (>=3.3.2,<4.0.0)
+Requires-Dist: cleo (>=2.1.0,<3.0.0)
 Requires-Dist: click (>=8.1.7,<9.0.0)
 Requires-Dist: colorcet (>=3.1.0,<4.0.0)
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 Requires-Dist: comm (>=0.2.2,<0.3.0)
 Requires-Dist: contourpy (>=1.2.1,<2.0.0)
+Requires-Dist: crashtest (>=0.4.1,<0.5.0)
+Requires-Dist: cssselect2 (>=0.7.0,<0.8.0)
 Requires-Dist: cycler (>=0.12.1,<0.13.0)
+Requires-Dist: db2ls (>=0.1.3,<0.2.0)
 Requires-Dist: debugpy (>=1.8.1,<2.0.0)
 Requires-Dist: decorator (>=5.1.1,<6.0.0)
 Requires-Dist: defusedxml (>=0.7.1,<0.8.0)
+Requires-Dist: distlib (>=0.3.8,<0.4.0)
 Requires-Dist: docx (>=0.2.4,<0.3.0)
 Requires-Dist: docx2pdf (>=0.1.8,<0.2.0)
+Requires-Dist: duckduckgo_search (>=6.1.12,<7.0.0)
+Requires-Dist: dulwich (>=0.21.7,<0.22.0)
+Requires-Dist: et-xmlfile (>=1.1.0,<2.0.0)
 Requires-Dist: executing (>=2.0.1,<3.0.0)
 Requires-Dist: fake-useragent (>=1.5.1,<2.0.0)
+Requires-Dist: fasteners (>=0.19,<0.20)
+Requires-Dist: fastjsonschema (>=2.20.0,<3.0.0)
+Requires-Dist: filelock (>=3.15.4,<4.0.0)
 Requires-Dist: flatbuffers (>=24.3.25,<25.0.0)
 Requires-Dist: fonttools (>=4.53.0,<5.0.0)
 Requires-Dist: fpdf (>=1.7.2,<2.0.0)
+Requires-Dist: fuzzywuzzy (>=0.18.0,<0.19.0)
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 Requires-Dist: h11 (>=0.9.0,<0.10.0)
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@@ -54,38 +80,56 @@ Requires-Dist: hyperframe (>=5.2.0,<6.0.0)
 Requires-Dist: idna (>=2.10,<3.0)
 Requires-Dist: imageio (>=2.34.1,<3.0.0)
 Requires-Dist: img2pdf (>=0.5.1,<0.6.0)
+Requires-Dist: installer (>=0.7.0,<0.8.0)
 Requires-Dist: ipykernel (>=6.29.4,<7.0.0)
-Requires-Dist: ipython (>=8.25.0,<9.0.0) ; python_version >= "3.9" and python_version < "4.0"
+Requires-Dist: ipython (>=8.25.0,<9.0.0)
+Requires-Dist: ipywidgets (>=8.1.3,<9.0.0)
 Requires-Dist: jedi (>=0.19.1,<0.20.0)
 Requires-Dist: joblib (>=1.3.2,<2.0.0)
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 Requires-Dist: jupyter_core (>=5.7.2,<6.0.0)
+Requires-Dist: jupyterlab_pygments (>=0.3.0,<0.4.0)
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 Requires-Dist: llvmlite (>=0.42.0,<0.43.0)
 Requires-Dist: lxml (>=4.9.4,<5.0.0)
+Requires-Dist: macholib (>=1.16.3,<2.0.0)
 Requires-Dist: matplotlib (>=3.8.4,<4.0.0)
 Requires-Dist: matplotlib-inline (>=0.1.7,<0.2.0)
+Requires-Dist: mistune (>=3.0.2,<4.0.0)
 Requires-Dist: mne (>=1.6.0,<2.0.0)
+Requires-Dist: modulegraph (>=0.19.6,<0.20.0)
+Requires-Dist: more-itertools (>=10.3.0,<11.0.0)
 Requires-Dist: mpmath (>=1.3.0,<2.0.0)
+Requires-Dist: msgpack (>=1.0.8,<2.0.0)
+Requires-Dist: nbclient (>=0.10.0,<0.11.0)
+Requires-Dist: nbconvert (>=7.16.4,<8.0.0)
+Requires-Dist: nbformat (>=5.10.4,<6.0.0)
+Requires-Dist: neo (>=0.13.1,<0.14.0)
 Requires-Dist: nest-asyncio (>=1.6.0,<2.0.0)
-Requires-Dist: networkx (>=3.3,<4.0) ; python_version >= "3.10" and python_version < "4.0"
+Requires-Dist: networkx (>=3.3,<4.0)
 Requires-Dist: nltk (>=3.8.1,<4.0.0)
 Requires-Dist: numba (>=0.59.1,<0.60.0)
+Requires-Dist: numcodecs (>=0.12.1,<0.13.0)
 Requires-Dist: numerizer (>=0.2.3,<0.3.0)
 Requires-Dist: numpy (>=1.26.4,<2.0.0)
 Requires-Dist: onnxruntime (>=1.18.0,<2.0.0)
 Requires-Dist: opencv-contrib-python (>=4.9.0.80,<5.0.0.0)
 Requires-Dist: opencv-python (>=4.9.0.80,<5.0.0.0)
 Requires-Dist: opencv-python-headless (>=4.9.0.80,<5.0.0.0)
+Requires-Dist: openpyxl (>=3.1.5,<4.0.0)
+Requires-Dist: orjson (>=3.10.6,<4.0.0)
 Requires-Dist: outcome (>=1.3.0.post0,<2.0.0)
 Requires-Dist: packaging (>=24.1,<25.0)
 Requires-Dist: pandas (>=2.2.2,<3.0.0)
 Requires-Dist: pandas-flavor (>=0.6.0,<0.7.0)
+Requires-Dist: pandocfilters (>=1.5.1,<2.0.0)
 Requires-Dist: parso (>=0.8.4,<0.9.0)
 Requires-Dist: patsy (>=0.5.6,<0.6.0)
 Requires-Dist: pdf2image (>=1.17.0,<2.0.0)
@@ -94,56 +138,87 @@ Requires-Dist: pexpect (>=4.9.0,<5.0.0)
 Requires-Dist: pikepdf (>=9.0.0,<10.0.0)
 Requires-Dist: pillow (>=10.3.0,<11.0.0)
 Requires-Dist: pingouin (>=0.5.4,<0.6.0)
+Requires-Dist: pkginfo (>=1.11.1,<2.0.0)
 Requires-Dist: platformdirs (>=4.2.2,<5.0.0)
+Requires-Dist: poetry (>=1.7.0,<2.0.0)
+Requires-Dist: poetry-core (>=1.8.1,<2.0.0)
+Requires-Dist: poetry-plugin-export (>=1.6.0,<2.0.0)
 Requires-Dist: pooch (>=1.8.2,<2.0.0)
+Requires-Dist: probeinterface (>=0.2.21,<0.3.0)
 Requires-Dist: prompt_toolkit (>=3.0.47,<4.0.0)
 Requires-Dist: protobuf (>=5.27.1,<6.0.0)
 Requires-Dist: psutil (>=5.9.8,<6.0.0)
 Requires-Dist: ptyprocess (>=0.7.0,<0.8.0)
 Requires-Dist: pure-eval (>=0.2.2,<0.3.0)
+Requires-Dist: py2app (>=0.28.8,<0.29.0)
+Requires-Dist: pyav (>=12.1.0,<13.0.0)
+Requires-Dist: pycairo (>=1.26.0,<2.0.0)
+Requires-Dist: pycparser (>=2.22,<3.0)
+Requires-Dist: pypandoc (>=1.13,<2.0)
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+Requires-Dist: pyproject_hooks (>=1.1.0,<2.0.0)
+Requires-Dist: pyreqwest_impersonate (>=0.4.9,<0.5.0)
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 Requires-Dist: python-dotenv (>=1.0.1,<2.0.0)
+Requires-Dist: python-pptx (>=0.6.23,<0.7.0)
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+Requires-Dist: quantities (>=0.15.0,<0.16.0)
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-Requires-Dist: rembg (>=2.0.56,<3.0.0) ; python_version >= "3.9" and python_version < "3.13"
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+Requires-Dist: trove-classifiers (>=2024.5.22,<2025.0.0)
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-Requires-Dist: urllib3 (>=2.2.1,<3.0.0)
+Requires-Dist: urllib3 (>=2.2.2,<3.0.0)
+Requires-Dist: virtualenv (>=20.26.3,<21.0.0)
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 Requires-Dist: webdriver-manager (>=4.0.1,<5.0.0)
+Requires-Dist: webencodings (>=0.5.1,<0.6.0)
+Requires-Dist: widgetsnbextension (>=4.0.11,<5.0.0)
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 Requires-Dist: wsproto (>=1.2.0,<2.0.0)
 Requires-Dist: xarray (>=2024.6.0,<2025.0.0)
+Requires-Dist: xattr (>=0.10.1,<0.11.0)
+Requires-Dist: zarr (>=2.17.2,<3.0.0)
 Description-Content-Type: text/markdown
 
 # Install

{py2ls-0.1.6.4.dist-info → py2ls-0.1.6.7.dist-info}/RECORD

@@ -122,7 +122,7 @@ py2ls/.gitattributes,sha256=Gh2-F2vCM7SZ01pX23UT8pQcmauXWfF3gwyRSb6ZAFs,66
 py2ls/.gitignore,sha256=y7GvbD_zZkjPVVIue8AyiuFkDMuUbvMaV65Lgu89To8,2763
 py2ls/LICENSE,sha256=UOZ1F5fFDe3XXvG4oNnkL1-Ecun7zpHzRxjp-XsMeAo,11324
 py2ls/README.md,sha256=CwvJWAnSXnCnrVHlnEbrxxi6MbjbE_MT6DH2D53S818,11572
-py2ls/__init__.py,sha256=hwR-FIp8IUYKPrEv3zvFE07LbQ3FfeM29Ka25WZbQgY,130
+py2ls/__init__.py,sha256=Nn8jTIvySX7t7DMJ8VNRVctTStgXGjHldOIdZ35PdW8,165
 py2ls/brain_atlas.py,sha256=w1o5EelRjq89zuFJUNSz4Da8HnTCwAwDAZ4NU4a-bAY,5486
 py2ls/chat.py,sha256=Yr22GoIvoWhpV3m4fdwV_I0Mn77La346_ymSinR-ORA,3793
 py2ls/correlators.py,sha256=RbOaJIPLCHJtUm5SFi_4dCJ7VFUPWR0PErfK3K26ad4,18243
@@ -132,15 +132,16 @@ py2ls/data/docs_links.json,sha256=kXgbbWo0b8bfV4n6iuuUNLnZipIyLzokUO6Lzmf7nO4,10
 py2ls/data/lang_code_iso639.json,sha256=qZiU7H2RLJjDMXK22C-jhwzLJCI5vKmampjB1ys4ek4,2157
 py2ls/db2ls.py,sha256=MMfFX47aIPIyu7fU9aPvX9lbPRPYOpJ_VXwlnWk-8qo,13615
 py2ls/doc.py,sha256=xN3g1OWfoaGUhikbJ0NqbN5eKy1VZVvWwRlhHMgyVEc,4243
+py2ls/export_requirements.py,sha256=psZtSe-MOD9L_w3dVpA_VJEKfq3J914g3Y1OtRNAb4g,2324
 py2ls/freqanalysis.py,sha256=F4218VSPbgL5tnngh6xNCYuNnfR-F_QjECUUxrPYZss,32594
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 py2ls/sleep_events_detectors.py,sha256=36MCuRrpurn0Uvzpo3p3b3_JlVsRNHSWCXbJxCGM3mg,51546
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