py2ls 0.1.4.9__py3-none-any.whl → 0.1.5.1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- py2ls/.git/COMMIT_EDITMSG +1 -1
- py2ls/.git/FETCH_HEAD +1 -1
- py2ls/.git/index +0 -0
- py2ls/.git/logs/HEAD +1 -0
- py2ls/.git/logs/refs/heads/main +1 -0
- py2ls/.git/logs/refs/remotes/origin/HEAD +2 -0
- py2ls/.git/logs/refs/remotes/origin/main +1 -0
- py2ls/.git/objects/20/72c28e83f4347959d29f7b3a6c1fc3e4ee6b59 +0 -0
- py2ls/.git/objects/41/dcf4b3bf0460946b2da93776cf9e836d62178f +0 -0
- py2ls/.git/objects/5a/192565abf89c9d765af846ce6d53a92b1ce7ad +0 -0
- py2ls/.git/objects/63/100154b27846e8010e55b6bf4b3d7762c14c5f +0 -0
- py2ls/.git/objects/68/6df3072c8b025fb18106ed2df505994ad062a9 +0 -0
- py2ls/.git/objects/94/74152b4b463d70ae5ad07f0c658be3e296026b +0 -0
- py2ls/.git/objects/97/1aef09ea939f46b60b9646f8d524c78a9220f4 +0 -0
- py2ls/.git/objects/bf/67907e337021ebff434e02b19b30a741c144af +0 -0
- py2ls/.git/objects/f9/045a08e96eb76848fc4d68e3e3e687cca39a2d +0 -0
- py2ls/.git/refs/heads/main +1 -1
- py2ls/.git/refs/remotes/origin/main +1 -1
- py2ls/__init__.py +2 -12
- py2ls/ips.py +17 -959
- py2ls/stats.py +810 -0
- py2ls/stdshade.py +184 -0
- {py2ls-0.1.4.9.dist-info → py2ls-0.1.5.1.dist-info}/METADATA +1 -1
- {py2ls-0.1.4.9.dist-info → py2ls-0.1.5.1.dist-info}/RECORD +25 -14
- {py2ls-0.1.4.9.dist-info → py2ls-0.1.5.1.dist-info}/WHEEL +0 -0
py2ls/stdshade.py
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from scipy.signal import savgol_filter
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import numpy as np
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import matplotlib.pyplot as plt
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def stdshade(ax=None,*args, **kwargs):
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def hue2rgb(hex_colors):
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def hex_to_rgb(hex_color):
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"""Converts a hexadecimal color code to RGB values."""
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if hex_colors.startswith("#"):
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hex_color = hex_color.lstrip("#")
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return tuple(int(hex_color[i : i + 2], 16) / 255.0 for i in (0, 2, 4))
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if isinstance(hex_colors, str):
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return hex_to_rgb(hex_colors)
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elif isinstance(hex_colors, (list)):
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"""Converts a list of hexadecimal color codes to a list of RGB values."""
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rgb_values = [hex_to_rgb(hex_color) for hex_color in hex_colors]
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return rgb_values
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if (
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isinstance(ax, np.ndarray)
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and ax.ndim == 2
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and min(ax.shape) > 1
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and max(ax.shape) > 1
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):
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y = ax
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ax = plt.gca()
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if ax is None:
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ax = plt.gca()
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alpha = 0.5
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acolor = "k"
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paraStdSem = "sem"
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plotStyle = "-"
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plotMarker = "none"
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smth = 1
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l_c_one = ["r", "g", "b", "m", "c", "y", "k", "w"]
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l_style2 = ["--", "-."]
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l_style1 = ["-", ":"]
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l_mark = ["o", "+", "*", ".", "x", "_", "|", "s", "d", "^", "v", ">", "<", "p", "h"]
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# Check each argument
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for iarg in range(len(args)):
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if (
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isinstance(args[iarg], np.ndarray)
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and args[iarg].ndim == 2
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and min(args[iarg].shape) > 1
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and max(args[iarg].shape) > 1
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):
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y = args[iarg]
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# Except y, continuous data is 'F'
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if (isinstance(args[iarg], np.ndarray) and args[iarg].ndim == 1) or isinstance(
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args[iarg], range
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):
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x = args[iarg]
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if isinstance(x, range):
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x = np.arange(start=x.start, stop=x.stop, step=x.step)
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# Only one number( 0~1), 'alpha' / color
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if isinstance(args[iarg], (int, float)):
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if np.size(args[iarg]) == 1 and 0 <= args[iarg] <= 1:
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alpha = args[iarg]
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if isinstance(args[iarg], (list, tuple)) and np.size(args[iarg]) == 3:
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acolor = args[iarg]
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acolor = tuple(acolor) if isinstance(acolor, list) else acolor
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# Color / plotStyle /
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if (
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isinstance(args[iarg], str)
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and len(args[iarg]) == 1
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and args[iarg] in l_c_one
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):
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acolor = args[iarg]
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else:
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if isinstance(args[iarg], str):
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if args[iarg] in ["sem", "std"]:
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paraStdSem = args[iarg]
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if args[iarg].startswith("#"):
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acolor=hue2rgb(args[iarg])
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if str2list(args[iarg])[0] in l_c_one:
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if len(args[iarg]) == 3:
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k = [i for i in str2list(args[iarg]) if i in l_c_one]
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if k != []:
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acolor = k[0]
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st = [i for i in l_style2 if i in args[iarg]]
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if st != []:
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plotStyle = st[0]
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elif len(args[iarg]) == 2:
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k = [i for i in str2list(args[iarg]) if i in l_c_one]
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if k != []:
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acolor = k[0]
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mk = [i for i in str2list(args[iarg]) if i in l_mark]
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if mk != []:
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plotMarker = mk[0]
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st = [i for i in l_style1 if i in args[iarg]]
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if st != []:
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plotStyle = st[0]
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if len(args[iarg]) == 1:
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k = [i for i in str2list(args[iarg]) if i in l_c_one]
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if k != []:
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acolor = k[0]
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mk = [i for i in str2list(args[iarg]) if i in l_mark]
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if mk != []:
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plotMarker = mk[0]
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st = [i for i in l_style1 if i in args[iarg]]
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if st != []:
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plotStyle = st[0]
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if len(args[iarg]) == 2:
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st = [i for i in l_style2 if i in args[iarg]]
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if st != []:
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plotStyle = st[0]
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# smth
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if (
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isinstance(args[iarg], (int, float))
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and np.size(args[iarg]) == 1
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and args[iarg] >= 1
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):
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smth = args[iarg]
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if "x" not in locals() or x is None:
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x = np.arange(1, y.shape[1] + 1)
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elif len(x) < y.shape[1]:
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y = y[:, x]
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nRow = y.shape[0]
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nCol = y.shape[1]
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print(f"y was corrected, please confirm that {nRow} row, {nCol} col")
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else:
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x = np.arange(1, y.shape[1] + 1)
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if x.shape[0] != 1:
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x = x.T
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yMean = np.nanmean(y, axis=0)
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if smth > 1:
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yMean = savgol_filter(np.nanmean(y, axis=0), smth, 1)
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else:
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yMean = np.nanmean(y, axis=0)
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if paraStdSem == "sem":
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if smth > 1:
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wings = savgol_filter(np.nanstd(y, axis=0) / np.sqrt(y.shape[0]), smth, 1)
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else:
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wings = np.nanstd(y, axis=0) / np.sqrt(y.shape[0])
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elif paraStdSem == "std":
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if smth > 1:
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wings = savgol_filter(np.nanstd(y, axis=0), smth, 1)
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else:
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wings = np.nanstd(y, axis=0)
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# fill_kws = kwargs.get('fill_kws', {})
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# line_kws = kwargs.get('line_kws', {})
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# setting form kwargs
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lw = kwargs.get('lw', 1.5)
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ls= kwargs.get('ls', plotStyle)
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marker=kwargs.get("marker",plotMarker)
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label=kwargs.get("label",None)
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label_line = kwargs.get("label_line",None)
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label_fill = karges.get('label_fill',None)
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if not label_line:
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label_line = label
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fill = ax.fill_between(x, yMean + wings, yMean - wings, color=acolor, alpha=alpha, lw=0,**fill_kws)
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if line_kws != {} and not any(key.lower() in ['lw', 'linewidth'] for key in line_kws.keys()):
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line = ax.plot(x, yMean, color=acolor, lw=lw, ls=ls, marker=marker, label=label_line)
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else:
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line = ax.plot(x, yMean, color=acolor, ls=ls, marker=marker, label=label_fill)
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return line[0], fill
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# =============================================================================
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# # for plot figures {Qiu et al.2023}
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# =============================================================================
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# =============================================================================
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# plt.rcParams.update({'figure.max_open_warning': 0})
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# # Output matplotlib figure to SVG with text as text, not curves
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# plt.rcParams['svg.fonttype'] = 'none'
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# plt.rcParams['pdf.fonttype'] = 42
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#
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# plt.rc('text', usetex=False)
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# # plt.style.use('ggplot')
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# plt.style.use('science')
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# plt.rc('font', family='serif')
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# plt.rcParams.update({
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# "font.family": "serif", # specify font family here
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# "font.serif": ["Arial"], # specify font here
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# "font.size": 11})
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# # plt.tight_layout()
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# =============================================================================
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# =============================================================================
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# # axis spine
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# # use it like: adjust_spines(ax, ['left', 'bottom'])
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# =============================================================================
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py2ls/.DS_Store,sha256=1lFlJ5EFymdzGAUAaI30vcaaLHt3F1LwpG7xILf9jsM,6148
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py2ls/.git/COMMIT_EDITMSG,sha256=
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py2ls/.git/FETCH_HEAD,sha256
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py2ls/.git/COMMIT_EDITMSG,sha256=5xj-jWMbrdOc9m7gSn-UcsAQ9FMNvWSbLWSsrOUIO5w,7
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py2ls/.git/FETCH_HEAD,sha256=iKDo1cbTrzTN2m6HbS_OlwlUhaffAV-utWXGjXUlOnE,100
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py2ls/.git/HEAD,sha256=KNJb-Cr0wOK3L1CVmyvrhZ4-YLljCl6MYD2tTdsrboA,21
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py2ls/.git/config,sha256=CL7WR7jU8VRchJwRooCBkXUMvuRoPdf3FWIBAOlap1c,378
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py2ls/.git/description,sha256=ZzMxc0Ca26m45Twn1DDnOHqin5VHEZ9uOTBrScIXSjE,16
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@@ -17,12 +17,12 @@ py2ls/.git/hooks/pre-receive.sample,sha256=pMPSuce7P9jRRBwxvU7nGlldZrRPz0ndsxAlI
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py2ls/.git/hooks/prepare-commit-msg.sample,sha256=6d3KpBif3dJe2X_Ix4nsp7bKFjkLI5KuMnbwyOGqRhk,1492
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py2ls/.git/hooks/push-to-checkout.sample,sha256=pT0HQXmLKHxt16-mSu5HPzBeZdP0lGO7nXQI7DsSv18,2783
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