py-gbcms 2.0.0__py3-none-any.whl
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- gbcms/__init__.py +13 -0
- gbcms/cli.py +745 -0
- gbcms/config.py +98 -0
- gbcms/counter.py +1074 -0
- gbcms/models.py +295 -0
- gbcms/numba_counter.py +394 -0
- gbcms/output.py +573 -0
- gbcms/parallel.py +129 -0
- gbcms/processor.py +293 -0
- gbcms/reference.py +86 -0
- gbcms/variant.py +390 -0
- py_gbcms-2.0.0.dist-info/METADATA +506 -0
- py_gbcms-2.0.0.dist-info/RECORD +16 -0
- py_gbcms-2.0.0.dist-info/WHEEL +4 -0
- py_gbcms-2.0.0.dist-info/entry_points.txt +2 -0
- py_gbcms-2.0.0.dist-info/licenses/LICENSE +664 -0
gbcms/__init__.py
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"""
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GetBaseCounts - Calculate base counts in multiple BAM files for variants
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A high-performance Python reimplementation of GetBaseCountsMultiSample.
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"""
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__version__ = "2.0.0"
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__author__ = "MSK-ACCESS Team"
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from .config import Config, CountType
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from .variant import VariantEntry
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__all__ = ["Config", "CountType", "VariantEntry", "__version__"]
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