pthelma 1.1.0__cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

evaporation/cli.py

@@ -0,0 +1,729 @@
+import configparser
+import datetime as dt
+import logging
+import os
+import sys
+import traceback
+from glob import glob
+from io import StringIO
+
+import click
+import iso8601
+import numpy as np
+from osgeo import gdal, ogr, osr
+
+from evaporation import PenmanMonteith
+from hspatial import NODATAVALUE
+from htimeseries import HTimeseries, TzinfoFromString
+from pthelma._version import __version__
+
+gdal.UseExceptions()
+
+
+class WrongValueError(configparser.Error):
+    pass
+
+
+class App:
+    def __init__(self, configfilename):
+        self.configfilename = configfilename
+
+    def run(self):
+        self.config = AppConfig(self.configfilename)
+        self.config.read()
+        self._setup_logger()
+        self._execute_with_error_handling()
+
+    def _execute_with_error_handling(self):
+        self.logger.info("Starting evaporation, " + dt.datetime.today().isoformat())
+        try:
+            self._execute()
+        except Exception as e:
+            self.logger.error(str(e))
+            self.logger.debug(traceback.format_exc())
+            self.logger.info(
+                "evaporation terminated with error, " + dt.datetime.today().isoformat()
+            )
+            raise click.ClickException(str(e))
+        else:
+            self.logger.info("Finished evaporation, " + dt.datetime.today().isoformat())
+
+    def _setup_logger(self):
+        self.logger = logging.getLogger("evaporation")
+        self._set_logger_handler()
+        self.logger.setLevel(self.config.loglevel.upper())
+
+    def _set_logger_handler(self):
+        if getattr(self.config, "logfile", None):
+            self.logger.addHandler(logging.FileHandler(self.config.logfile))
+        else:
+            self.logger.addHandler(logging.StreamHandler())
+
+    def _execute(self):
+        if self.config.is_spatial:
+            ProcessSpatial(self.config).execute()
+        else:
+            ProcessAtPoint(self.config).execute()
+
+
+class AppConfig:
+    config_file_options = {
+        "logfile": {"fallback": ""},
+        "loglevel": {"fallback": "warning"},
+        "base_dir": {"fallback": ""},
+        "time_step": {},
+        "elevation": {"fallback": ""},
+        "albedo": {},
+        "nighttime_solar_radiation_ratio": {"fallback": 0.6},
+        "unit_converter_temperature": {"fallback": "x"},
+        "unit_converter_humidity": {"fallback": "x"},
+        "unit_converter_wind_speed": {"fallback": "x"},
+        "unit_converter_pressure": {"fallback": "x"},
+        "unit_converter_solar_radiation": {"fallback": "x"},
+        "temperature_min_prefix": {"fallback": "temperature_min"},
+        "temperature_max_prefix": {"fallback": "temperature_max"},
+        "temperature_prefix": {"fallback": "temperature"},
+        "humidity_prefix": {"fallback": "humidity"},
+        "humidity_min_prefix": {"fallback": "humidity_min"},
+        "humidity_max_prefix": {"fallback": "humidity_max"},
+        "wind_speed_prefix": {"fallback": "wind_speed"},
+        "pressure_prefix": {"fallback": "pressure"},
+        "solar_radiation_prefix": {"fallback": "solar_radiation"},
+        "sunshine_duration_prefix": {"fallback": "sunshine_duration"},
+        "evaporation_prefix": {"fallback": "evaporation"},
+    }
+
+    def __init__(self, configfilename):
+        self.configfilename = configfilename
+
+    def read(self):
+        try:
+            self._parse_config()
+        except (OSError, configparser.Error) as e:
+            sys.stderr.write(str(e))
+            raise click.ClickException(str(e))
+
+    def _parse_config(self):
+        self._read_config_file()
+        self._get_config_options()
+        self._parse_config_options()
+        self._parse_unit_converters()
+        self._parse_elevation()
+
+    def _read_config_file(self):
+        self.config = configparser.ConfigParser(interpolation=None)
+        try:
+            self._read_config_file_assuming_it_has_section_headers()
+        except configparser.MissingSectionHeaderError:
+            self._read_config_file_without_sections()
+
+    def _read_config_file_assuming_it_has_section_headers(self):
+        with open(self.configfilename) as f:
+            self.config.read_file(f)
+
+    def _read_config_file_without_sections(self):
+        with open(self.configfilename) as f:
+            configuration = "[General]\n" + f.read()
+        self.config.read_file(StringIO(configuration))
+
+    def _get_config_options(self):
+        self.options = {
+            opt: self.config.get("General", opt, **kwargs)
+            for opt, kwargs in self.config_file_options.items()
+        }
+        for key, value in self.options.items():
+            setattr(self, key, value)
+
+    def _parse_config_options(self):
+        self._parse_log_level()
+        self._parse_time_step()
+        self._parse_unit_converters()
+        self._set_is_spatial()
+        self._parse_elevation()
+        self._parse_albedo()
+        self._parse_nighttime_solar_radiation_ratio()
+
+    def _parse_log_level(self):
+        log_levels = ("ERROR", "WARNING", "INFO", "DEBUG")
+        self.loglevel = self.options["loglevel"].upper()
+        if self.loglevel not in log_levels:
+            raise WrongValueError("loglevel must be one of " + ", ".join(log_levels))
+
+    def _parse_time_step(self):
+        s = self.options["time_step"]
+        self._check_time_step(s)
+        self.time_step = s
+
+    def _check_time_step(self, s):
+        if s not in ("D", "H"):
+            raise WrongValueError(
+                '"{}" is not an appropriate time step; in this version of '
+                "vaporize, the step must be either D or H.".format(s)
+            )
+
+    def _parse_unit_converters(self):
+        vars = {"temperature", "humidity", "wind_speed", "pressure", "solar_radiation"}
+        self.unit_converters = {}
+        for var in vars:
+            config_item = "unit_converter_" + var
+            config_value = self.options[config_item]
+            lambda_defn = "lambda x: " + config_value
+            self._set_unit_converter(var, config_item, config_value, lambda_defn)
+
+    def _set_unit_converter(self, var, config_item, config_value, lambda_defn):
+        try:
+            self.unit_converters[var] = eval(lambda_defn)
+        except Exception as e:
+            raise WrongValueError(
+                "{} while parsing {} ({}): {}".format(
+                    e.__class__.__name__, config_item, config_value, str(e)
+                )
+            )
+
+    def _parse_elevation(self):
+        s = self.options["elevation"]
+        if s == "":
+            self.elevation = None
+        else:
+            self.elevation = self._get_number_or_grid(s)
+        self._check_elevation()
+
+    def _check_elevation(self):
+        if self.is_spatial:
+            self._check_elevation_for_spatial()
+        else:
+            self._check_elevation_for_point()
+
+    def _check_elevation_for_spatial(self):
+        if self.elevation is None:
+            raise WrongValueError(
+                "elevation needs to be specified in the configuration file"
+            )
+        elif np.any(self.elevation < -427) or np.any(self.elevation > 8848):
+            raise WrongValueError("The elevation must be between -427 and 8848")
+
+    def _check_elevation_for_point(self):
+        if self.elevation is not None:
+            raise WrongValueError(
+                "elevation should only be specified in the configuration file "
+                "in spatial calculation (otherwise we get it from the hts files)"
+            )
+
+    def _parse_albedo(self):
+        s = self.options["albedo"].split()
+        self._check_albedo_is_one_or_twelve_items(s)
+        albedo = []
+        for item in s:
+            albedo.append(self._get_number_or_grid(item))
+            self._check_albedo_domain(albedo[-1])
+        self.albedo = albedo[0] if len(s) == 1 else albedo
+
+    def _check_albedo_is_one_or_twelve_items(self, s):
+        if len(s) not in (1, 12):
+            raise ValueError(
+                "Albedo must be either one item or 12 space-separated items"
+            )
+
+    def _check_albedo_domain(self, albedo):
+        value_to_test = albedo if isinstance(albedo, float) else albedo.all()
+        if value_to_test < 0.0 or value_to_test > 1.0:
+            raise ValueError("Albedo must be between 0.0 and 1.0")
+
+    def _parse_nighttime_solar_radiation_ratio(self):
+        s = self.options["nighttime_solar_radiation_ratio"]
+        self.nighttime_solar_radiation_ratio = self._get_number_or_grid(s)
+        self._check_nighttime_solar_radiation_ratio()
+
+    def _check_nighttime_solar_radiation_ratio(self):
+        a = self.nighttime_solar_radiation_ratio
+        if a < 0.4 or a > 0.8:
+            raise WrongValueError(
+                "The nighttime solar radiation ratio must " "be between 0.4 and 0.8"
+            )
+
+    def _get_number_or_grid(self, s):
+        """Return either a number or a grid from s, depending on its contents.
+
+        If string s holds a valid number, return it; otherwise try to open the
+        geotiff file whose filename is s and read its first band into the
+        returned numpy array.
+        """
+        try:
+            return float(s)
+        except ValueError:
+            return self._get_grid(s)
+
+    def _get_grid(self, s):
+        input_file = gdal.Open(os.path.join(self.options["base_dir"], s))
+        result = input_file.GetRasterBand(1).ReadAsArray()
+        nodata = input_file.GetRasterBand(1).GetNoDataValue()
+        if nodata is not None:
+            result = np.ma.masked_values(result, nodata, copy=False)
+        return result
+
+    def _set_is_spatial(self):
+        base_dir = self.options["base_dir"]
+        base_dir_has_tif_files = bool(glob(os.path.join(base_dir, "*.tif")))
+        base_dir_has_hts_files = bool(glob(os.path.join(base_dir, "*.hts")))
+        self._check_tif_hts_consistency(base_dir_has_tif_files, base_dir_has_hts_files)
+        self.is_spatial = base_dir_has_tif_files
+
+    def _check_tif_hts_consistency(self, has_tif, has_hts):
+        if has_tif and has_hts:
+            raise WrongValueError(
+                "Base directory {} contains both tif files and hts files; "
+                "this is not allowed.".format(self.options["base_dir"])
+            )
+        elif not has_tif and not has_hts:
+            raise WrongValueError(
+                "Base directory {} contains neither tif files nor hts files.".format(
+                    self.options["base_dir"]
+                )
+            )
+
+
+class ProcessAtPoint:
+    def __init__(self, config):
+        self.config = config
+
+    def execute(self):
+        self._read_input_timeseries()
+        self._setup_attrs()
+        self._check_all_timeseries_are_in_same_location_and_timezone()
+        self._get_location_in_wgs84()
+        self._prepare_penman_monteith_parameters()
+        self._prepare_resulting_htimeseries_object()
+        self._determine_variables_to_use_in_calculation()
+        self._calculate_evaporation()
+        self._save_result()
+
+    def _setup_attrs(self):
+        atimeseries = self.input_timeseries["wind_speed"]
+        self.location = atimeseries.location
+        self.timezone = getattr(atimeseries, "timezone", None)
+
+    def _read_input_timeseries(self):
+        vars = {
+            "temperature_min",
+            "temperature_max",
+            "temperature",
+            "humidity",
+            "humidity_min",
+            "humidity_max",
+            "wind_speed",
+            "pressure",
+            "solar_radiation",
+            "sunshine_duration",
+        }
+        self.input_timeseries = {}
+        for var in vars:
+            self._get_input_timeseries_for_var(var)
+
+    def _get_input_timeseries_for_var(self, var):
+        filename = os.path.join(
+            self.config.base_dir, getattr(self.config, var + "_prefix") + ".hts"
+        )
+        if not os.path.exists(filename):
+            return
+        with open(filename, "r", newline="\n") as f:
+            self.input_timeseries[var] = HTimeseries(f)
+
+    def _check_all_timeseries_are_in_same_location_and_timezone(self):
+        for i, (name, hts) in enumerate(self.input_timeseries.items()):
+            if i == 0:
+                reference_hts = hts
+            else:
+                self._compare_location_and_timezone_of(hts, reference_hts)
+
+    def _compare_location_and_timezone_of(self, hts1, hts2):
+        self._compare_locations_of(hts1, hts2)
+        self._compare_altitudes_of(hts1, hts2)
+        self._compare_timezones_of(hts1, hts2)
+
+    def _compare_locations_of(self, hts1, hts2):
+        loc1 = hts1.location
+        loc2 = hts2.location
+
+        abscissas_differ = self._numbers_are_wrong_or_differ(
+            loc1.get("abscissa"), loc2.get("abscissa")
+        )
+        ordinates_differ = self._numbers_are_wrong_or_differ(
+            loc1.get("ordinate"), loc2.get("ordinate")
+        )
+        srids_differ = loc1.get("srid") != loc2.get("srid")
+
+        if abscissas_differ or ordinates_differ or srids_differ:
+            raise ValueError(
+                "Incorrect or unspecified or inconsistent locations in the time series "
+                "files."
+            )
+
+    def _numbers_are_wrong_or_differ(self, num1, num2, tolerance=1e7):
+        if num1 is None or num2 is None:
+            return True
+        return abs(num1 - num2) > tolerance
+
+    def _compare_altitudes_of(self, hts1, hts2):
+        altitude1 = hts1.location.get("altitude")
+        altitude2 = hts2.location.get("altitude")
+        if self._numbers_are_wrong_or_differ(altitude1, altitude2, 1e-2):
+            raise ValueError(
+                "Incorrect or unspecified or inconsistent altitudes in the time series "
+                "files."
+            )
+
+    def _compare_timezones_of(self, hts1, hts2):
+        timezone1 = getattr(hts1, "timezone", "")
+        timezone2 = getattr(hts2, "timezone", "")
+        if timezone1 != timezone2:
+            raise ValueError(
+                "Incorrect or unspecified or inconsistent time zones in the time "
+                "series files."
+            )
+
+    def _get_location_in_wgs84(self):
+        source_projection = osr.SpatialReference()
+        source_projection.ImportFromEPSG(self.location["srid"])
+        wgs84 = osr.SpatialReference()
+        wgs84.ImportFromEPSG(4326)
+        transform = osr.CoordinateTransformation(source_projection, wgs84)
+        apoint = ogr.Geometry(ogr.wkbPoint)
+        apoint.AddPoint(self.location["abscissa"], self.location["ordinate"])
+        apoint.Transform(transform)
+        self.location["latitude"] = apoint.GetY()
+        self.location["longitude"] = apoint.GetX()
+
+    def _prepare_penman_monteith_parameters(self):
+        nsrr = self.config.nighttime_solar_radiation_ratio
+        self.penman_monteith = PenmanMonteith(
+            albedo=self.config.albedo,
+            nighttime_solar_radiation_ratio=nsrr,
+            elevation=self.location["altitude"],
+            latitude=self.location["latitude"],
+            longitude=self.location["longitude"],
+            time_step=self.config.time_step,
+            unit_converters=self.config.unit_converters,
+        )
+
+    def _prepare_resulting_htimeseries_object(self):
+        tzinfo = self.input_timeseries["wind_speed"].data.index.tz
+        self.pet = HTimeseries(default_tzinfo=tzinfo)
+        self.pet.time_step = self.config.time_step
+        self.pet.unit = "mm"
+        self.pet.timezone = self.timezone
+        self.pet.variable = "Potential Evapotranspiration"
+        self.pet.precision = 2 if self.config.time_step == "H" else 1
+        self.pet.location = self.location
+
+    def _determine_variables_to_use_in_calculation(self):
+        if self.config.time_step == "H":
+            vars = ["temperature", "humidity", "wind_speed", "solar_radiation"]
+            if "pressure" in self.input_timeseries:
+                vars.append("pressure")
+        elif self.config.time_step == "D":
+            vars = (
+                "temperature_max",
+                "temperature_min",
+                "humidity_max",
+                "humidity_min",
+                "wind_speed",
+                (
+                    "solar_radiation"
+                    if "solar_radiation" in self.input_timeseries
+                    else "sunshine_duration"
+                ),
+            )
+        self.input_vars = vars
+
+    def _calculate_evaporation(self):
+        for adatetime in self.input_timeseries["wind_speed"].data.index:
+            self._calculate_evaporation_for(adatetime)
+
+    def _calculate_evaporation_for(self, adatetime):
+        try:
+            kwargs = {
+                v: self.input_timeseries[v].data.loc[adatetime, "value"]
+                for v in self.input_vars
+            }
+        except (IndexError, KeyError):
+            return
+        kwargs["adatetime"] = self._datetime64_to_aware_datetime(adatetime)
+        self.pet.data.loc[adatetime, "value"] = self.penman_monteith.calculate(**kwargs)
+
+    def _datetime64_to_aware_datetime(self, adatetime):
+        result = adatetime.to_pydatetime()
+        if self.timezone:
+            result = result.replace(tzinfo=TzinfoFromString(self.timezone))
+        return result
+
+    def _save_result(self):
+        outfilename = self.config.evaporation_prefix + ".hts"
+        outpathname = os.path.join(self.config.base_dir, outfilename)
+        with open(outpathname, "w") as f:
+            self.pet.write(f, format=HTimeseries.FILE)
+
+
+class ProcessSpatial:
+    def __init__(self, config):
+        self.config = config
+
+    def execute(self):
+        self._get_geographical_reference_file()
+        self._get_timestamps()
+        self._get_geodata()
+        self._prepare_penman_monteith_parameters()
+        self._calculate_evaporation_for_all_timestamps()
+        self._remove_stale_evaporation_files()
+
+    def _get_geographical_reference_file(self):
+        # Arbitrarily use the first temperature file to extract location and
+        # other geographical stuff. Elsewhere consistency of such data from all
+        # other files with this file will be checked.
+        pattern = os.path.join(
+            self.config.base_dir, self.config.wind_speed_prefix + "-*.tif"
+        )
+        wind_speed_files = glob(pattern)
+        self.geographical_reference_file = wind_speed_files[0]
+
+    def _get_timestamps(self):
+        pattern = self.config.wind_speed_prefix + "-*.tif"
+        saved_cwd = os.getcwd()
+        try:
+            os.chdir(self.config.base_dir)
+            wind_speed_files = glob(pattern)
+        finally:
+            os.chdir(saved_cwd)
+
+        # Remove the prefix from the start and the .tif from the end, leaving
+        # only the date.
+        prefix_len = len(self.config.wind_speed_prefix)
+        start = prefix_len + 1
+        self.timestamps = [item[start:-4] for item in wind_speed_files]
+
+    def _get_geodata(self):
+        """
+        Retrieve geographical stuff into self.latitude, self.longitude,
+        self.width, self.height, self.geo_transform, self.projection. We do
+        this by retrieving the data from self.geographical_reference_file.
+        """
+        # Read data from GeoTIFF file
+        fp = gdal.Open(self.geographical_reference_file)
+        self.width, self.height = fp.RasterXSize, fp.RasterYSize
+        self.geo_transform = fp.GetGeoTransform()
+        self.projection = osr.SpatialReference()
+        self.projection.ImportFromWkt(fp.GetProjection())
+
+        # Find (x_left, y_top), (x_right, y_bottom)
+        x_left, x_step, d1, y_top, d2, y_step = self.geo_transform
+        x_right = x_left + self.width * x_step
+        y_bottom = y_top + self.height * y_step
+
+        # Transform into (long_left, lat_top), (long_right, lat_bottom)
+        wgs84 = osr.SpatialReference()
+        wgs84.ImportFromEPSG(4326)
+        transform = osr.CoordinateTransformation(self.projection, wgs84)
+        top_left = ogr.Geometry(ogr.wkbPoint)
+        top_left.AddPoint(x_left, y_top)
+        bottom_right = ogr.Geometry(ogr.wkbPoint)
+        bottom_right.AddPoint(x_right, y_bottom)
+        top_left.Transform(transform)
+        bottom_right.Transform(transform)
+        long_left, lat_top = top_left.GetX(), top_left.GetY()
+        long_right, lat_bottom = bottom_right.GetX(), bottom_right.GetY()
+
+        # Calculate self.latitude and self.longitude
+        long_step = (long_right - long_left) / self.width
+        longitudes = np.arange(
+            long_left + long_step / 2.0, long_left + long_step * self.width, long_step
+        )
+        lat_step = (lat_top - lat_bottom) / self.height
+        latitudes = np.arange(
+            lat_top + lat_step / 2.0, lat_top + lat_step * self.height, lat_step
+        )
+        self.longitude, self.latitude = np.meshgrid(longitudes, latitudes)
+
+    def _prepare_penman_monteith_parameters(self):
+        nsrr = self.config.nighttime_solar_radiation_ratio
+        self.penman_monteith = PenmanMonteith(
+            albedo=self.config.albedo,
+            nighttime_solar_radiation_ratio=nsrr,
+            elevation=self.config.elevation,
+            latitude=self.latitude,
+            longitude=self.longitude,
+            time_step=self.config.time_step,
+            unit_converters=self.config.unit_converters,
+        )
+
+    def _calculate_evaporation_for_all_timestamps(self):
+        for timestamp in self.timestamps:
+            self._calculate_evaporation_for(timestamp)
+
+    def _calculate_evaporation_for(self, timestamp):
+        self._read_input_geofiles(timestamp)
+        self._verify_that_solar_radiation_or_sunshine_duration_was_present(timestamp)
+        adatetime = self._get_adatetime_arg(timestamp)
+        result = self.penman_monteith.calculate(adatetime=adatetime, **self.input_data)
+        self._write_result_to_file(result, timestamp, adatetime)
+
+    def _read_input_geofiles(self, timestamp):
+        self.input_data = {v: None for v in self._get_variables()}
+        for var in self.input_data:
+            self._read_input_geofile(var, timestamp)
+
+    def _get_variables(self):
+        if self.config.time_step == "H":
+            return {
+                "temperature",
+                "humidity",
+                "wind_speed",
+                "pressure",
+                "solar_radiation",
+            }
+        else:
+            return {
+                "temperature_max",
+                "temperature_min",
+                "humidity_max",
+                "humidity_min",
+                "wind_speed",
+                "solar_radiation",
+                "sunshine_duration",
+            }
+
+    def _read_input_geofile(self, variable, timestamp):
+        fp = self._open_geofile(variable, timestamp)
+        if fp is None:
+            return
+        self._verify_consistency_of_geodata(fp)
+        self.input_data[variable] = self._read_array_from_geofile(fp)
+        fp = None
+
+    def _open_geofile(self, variable, timestamp):
+        filename_prefix = getattr(self.config, variable + "_prefix")
+        filename = filename_prefix + "-" + timestamp + ".tif"
+        self._filename = os.path.join(self.config.base_dir, filename)
+        if variable in ("solar_radiation", "sunshine_duration"):
+            if not os.path.exists(self._filename):
+                # Either solar_radiation or sunshine_duration may be absent; here we
+                # allow both to be absent and elsewhere we will check that one was
+                # present
+                return
+        try:
+            return gdal.Open(self._filename)
+        except RuntimeError:
+            if variable == "pressure":
+                return
+            raise
+
+    def _verify_consistency_of_geodata(self, fp):
+        consistent = all(
+            (
+                self.width == fp.RasterXSize,
+                self.height == fp.RasterYSize,
+                self.geo_transform == fp.GetGeoTransform(),
+                self.projection.ExportToWkt() == fp.GetProjection(),
+            )
+        )
+        if not consistent:
+            raise Exception(
+                "Not all input files have the same "
+                "width, height, geo_transform and projection "
+                "(offending items: {} and {})".format(
+                    self.geographical_reference_file, self._filename
+                )
+            )
+
+    def _read_array_from_geofile(self, fp):
+        array = fp.GetRasterBand(1).ReadAsArray()
+        nodata = fp.GetRasterBand(1).GetNoDataValue()
+        if nodata is not None:
+            array = np.ma.masked_values(array, nodata, copy=False)
+        return array
+
+    def _verify_that_solar_radiation_or_sunshine_duration_was_present(self, timestamp):
+        if self.input_data["solar_radiation"] is not None:
+            self.input_data.pop("sunshine_duration", None)
+        elif self.input_data.get("sunshine_duration", None) is not None:
+            self.input_data.pop("solar_radiation", None)
+        else:
+            raise RuntimeError(
+                "Neither sunshine_duration nor solar_radiation are available for "
+                + timestamp
+            )
+
+    def _get_adatetime_arg(self, timestamp):
+        adatetime = iso8601.parse_date(
+            self._timestamp_from_filename(timestamp), default_timezone=None
+        )
+        if self.config.time_step == "D":
+            adatetime = adatetime.date()
+        elif adatetime.tzinfo is None:
+            raise Exception(
+                "The time stamp in the input files does not have a time zone specified."
+            )
+        return adatetime
+
+    def _timestamp_from_filename(self, s):
+        """Convert a timestamp from its filename format  to its iso format
+
+        E.g. from 2014-10-01-15-00-0100 to 2014-10-01 15:00-0100).
+        """
+        first_hyphen = s.find("-")
+        if first_hyphen < 0:
+            return s
+        second_hyphen = s.find("-", first_hyphen + 1)
+        if second_hyphen < 0:
+            return s
+        third_hyphen = s.find("-", second_hyphen + 1)
+        if third_hyphen < 0:
+            return s
+        fourth_hyphen = s.find("-", third_hyphen + 1)
+        chars = list(s)
+        chars[third_hyphen] = " "
+        if fourth_hyphen > 0:
+            chars[fourth_hyphen] = ":"
+        return "".join(chars)
+
+    def _write_result_to_file(self, result, timestamp, adatetime):
+        output_filename = self.config.evaporation_prefix + "-" + timestamp + ".tif"
+        output_pathname = os.path.join(self.config.base_dir, output_filename)
+        output = gdal.GetDriverByName("GTiff").Create(
+            output_pathname, self.width, self.height, 1, gdal.GDT_Float32
+        )
+        try:
+            output.SetMetadataItem("TIMESTAMP", adatetime.isoformat())
+            output.SetGeoTransform(self.geo_transform)
+            output.SetProjection(self.projection.ExportToWkt())
+            result[result.mask] = NODATAVALUE
+            output.GetRasterBand(1).SetNoDataValue(NODATAVALUE)
+            output.GetRasterBand(1).WriteArray(result)
+        finally:
+            # Close the dataset
+            output = None
+
+    def _remove_stale_evaporation_files(self):
+        """Remove evaporation files for which no input files exist."""
+        pattern = self.config.evaporation_prefix + "-*.tif"
+        saved_cwd = os.getcwd()
+        try:
+            os.chdir(self.config.base_dir)
+            evaporation_files = glob(pattern)
+            prefix_len = len(self.config.evaporation_prefix)
+            for filename in evaporation_files:
+                start = prefix_len + 1
+                if filename[start:-4] not in self.timestamps:
+                    os.unlink(filename)
+        finally:
+            os.chdir(saved_cwd)
+
+
+@click.command()
+@click.argument("configfile")
+@click.version_option(
+    version=__version__, message="%(prog)s from pthelma v.%(version)s"
+)
+def main(configfile):
+    """Calculation of evaporation and transpiration"""
+
+    app = App(configfile)
+    app.run()