proteus-python 2026.7.0__py3-none-any.whl

proteus/__init__.py

@@ -0,0 +1,83 @@
+from __future__ import annotations
+
+from importlib import import_module
+from importlib.metadata import PackageNotFoundError, version as _dist_version
+from pathlib import Path
+from subprocess import DEVNULL, CalledProcessError, check_output
+
+from ._backend import available_backend_variants, available_backends
+
+_METADATA_EXPORTS = ["available_backends", "available_backend_variants"]
+
+
+def _fallback_version():
+    repo_root = Path(__file__).resolve().parents[2]
+    try:
+        sha = check_output(
+            ["git", "rev-parse", "--short", "HEAD"],
+            cwd=repo_root,
+            stderr=DEVNULL,
+            text=True,
+        ).strip()
+    except (CalledProcessError, FileNotFoundError):
+        return "dev"
+
+    return f"g{sha}" if sha else "dev"
+
+
+def _backend_loader():
+    from . import _backend
+
+    return _backend
+
+
+def _native_module():
+    return import_module(f"{__name__}._proteus")
+
+
+def _export_native_api() -> list[str]:
+    if not available_backends():
+        return []
+
+    native = _native_module()
+    globals()["__doc__"] = native.__doc__
+    globals()["__file__"] = getattr(native, "__file__", __file__)
+
+    exports: list[str] = []
+    for name in dir(native):
+        if name.startswith("__") and name not in {"__doc__", "__file__"}:
+            continue
+        globals()[name] = getattr(native, name)
+        exports.append(name)
+    return exports
+
+
+try:
+    __version__ = _dist_version("proteus-python")
+except PackageNotFoundError:
+    __version__ = _fallback_version()
+
+
+_HAS_BACKENDS = bool(available_backends())
+__all__ = sorted(
+    set(_METADATA_EXPORTS)
+    | set(_export_native_api())
+    | ({"active_backend", "active_backend_variant"} if _HAS_BACKENDS else set())
+)
+
+
+def __getattr__(name: str):
+    if name == "active_backend":
+        return _backend_loader().active_backend()
+    if name == "active_backend_variant":
+        return _backend_loader().active_backend_variant()
+    return getattr(_native_module(), name)
+
+
+def __dir__():
+    exported = set(globals()) | {"active_backend", "active_backend_variant"}
+    try:
+        exported.update(dir(_native_module()))
+    except ImportError:
+        pass
+    return sorted(exported)

proteus/_backend.py

@@ -0,0 +1,181 @@
+from __future__ import annotations
+
+import os
+from dataclasses import dataclass
+from importlib import import_module
+from importlib.metadata import entry_points
+from types import ModuleType
+from typing import Iterable
+
+
+_BACKEND_ENTRYPOINT_GROUP = "proteus.backends"
+_BACKEND_KIND_ENV = "PROTEUS_BACKEND_KIND"
+_BACKEND_VARIANT_ENV = "PROTEUS_BACKEND_VARIANT"
+_LOCKED_BACKEND: tuple[str, str] | None = None
+
+
+@dataclass(frozen=True)
+class BackendPackageSpec:
+    kind: str
+    module_name: str
+    priority: int
+
+
+def _entry_points_for_group(group: str):
+    discovered = entry_points()
+    if hasattr(discovered, "select"):
+        return list(discovered.select(group=group))
+    return list(discovered.get(group, []))
+
+
+def _normalize_backend_spec(raw_spec: object) -> BackendPackageSpec:
+    if not isinstance(raw_spec, dict):
+        raise ImportError(
+            "Proteus backend entry point must return a dict with backend metadata"
+        )
+
+    try:
+        kind = str(raw_spec["kind"])
+        module_name = str(raw_spec["module"])
+        priority = int(raw_spec["priority"])
+    except KeyError as exc:
+        raise ImportError(
+            f"Proteus backend metadata is missing required key {exc.args[0]!r}"
+        ) from exc
+
+    return BackendPackageSpec(kind=kind, module_name=module_name, priority=priority)
+
+
+def _discover_backend_specs() -> list[BackendPackageSpec]:
+    specs = []
+    for ep in _entry_points_for_group(_BACKEND_ENTRYPOINT_GROUP):
+        raw_spec = ep.load()()
+        specs.append(_normalize_backend_spec(raw_spec))
+    return specs
+
+
+def _sorted_specs(specs: Iterable[BackendPackageSpec]) -> list[BackendPackageSpec]:
+    return sorted(specs, key=lambda spec: (spec.priority, spec.kind), reverse=True)
+
+
+def _backend_module(spec: BackendPackageSpec) -> ModuleType:
+    return import_module(spec.module_name)
+
+
+def available_backends() -> list[str]:
+    return [spec.kind for spec in _sorted_specs(_discover_backend_specs())]
+
+
+def available_backend_variants() -> list[str]:
+    variants: list[str] = []
+    for spec in _sorted_specs(_discover_backend_specs()):
+        module = _backend_module(spec)
+        variants.extend(str(item["id"]) for item in module.available_variant_specs())
+    return variants
+
+
+def _raise_no_backend() -> None:
+    raise ImportError(
+        "No Proteus backend is installed. Install one of "
+        "proteus-python-backend-host-llvm22, "
+        "proteus-python-backend-cuda12-llvm22, or "
+        "proteus-python-backend-rocm72 from "
+        "https://olympus-hpc.github.io/proteus/wheels/simple/."
+    )
+
+
+def _spec_by_kind(kind: str) -> BackendPackageSpec:
+    for spec in _sorted_specs(_discover_backend_specs()):
+        if spec.kind == kind:
+            return spec
+    raise ImportError(
+        f"Requested Proteus backend kind {kind!r} is not installed. "
+        f"Available backends: {available_backends() or 'none'}"
+    )
+
+
+def _spec_for_variant(variant_id: str) -> BackendPackageSpec:
+    for spec in _sorted_specs(_discover_backend_specs()):
+        module = _backend_module(spec)
+        if any(str(item["id"]) == variant_id for item in module.available_variant_specs()):
+            return spec
+    raise ImportError(
+        f"Requested Proteus backend variant {variant_id!r} is not installed. "
+        f"Available variants: {available_backend_variants() or 'none'}"
+    )
+
+
+def _selected_backend_spec() -> BackendPackageSpec:
+    specs = _sorted_specs(_discover_backend_specs())
+    if not specs:
+        _raise_no_backend()
+
+    variant_override = os.environ.get(_BACKEND_VARIANT_ENV, "").strip()
+    if variant_override:
+        return _spec_for_variant(variant_override)
+
+    kind_override = os.environ.get(_BACKEND_KIND_ENV, "").strip()
+    if kind_override:
+        return _spec_by_kind(kind_override)
+
+    compatible: list[BackendPackageSpec] = []
+    host_spec: BackendPackageSpec | None = None
+    for spec in specs:
+        module = _backend_module(spec)
+        if spec.kind == "host":
+            host_spec = spec
+        if module.is_runtime_compatible():
+            compatible.append(spec)
+
+    if compatible:
+        return _sorted_specs(compatible)[0]
+    if host_spec is not None:
+        return host_spec
+    return specs[0]
+
+
+def _selected_variant_spec() -> dict[str, object]:
+    spec = _selected_backend_spec()
+    module = _backend_module(spec)
+    variant_spec = module.active_variant_spec()
+    if str(variant_spec["kind"]) != spec.kind:
+        raise ImportError(
+            f"Proteus backend {spec.kind!r} returned mismatched variant "
+            f"kind {variant_spec['kind']!r}"
+        )
+    return variant_spec
+
+
+def _ensure_process_lock() -> dict[str, object]:
+    global _LOCKED_BACKEND
+
+    variant = _selected_variant_spec()
+    selection = (str(variant["kind"]), str(variant["id"]))
+    if _LOCKED_BACKEND is None:
+        _LOCKED_BACKEND = selection
+        return variant
+    if _LOCKED_BACKEND != selection:
+        raise RuntimeError(
+            "Proteus backend selection is locked for this process. "
+            f"Already loaded {_LOCKED_BACKEND[0]!r}/{_LOCKED_BACKEND[1]!r}, "
+            f"requested {selection[0]!r}/{selection[1]!r}."
+        )
+    return variant
+
+
+def active_backend() -> str:
+    return str(_selected_variant_spec()["kind"])
+
+
+def active_backend_variant() -> str:
+    return str(_selected_variant_spec()["id"])
+
+
+def load_backend_module():
+    variant = _ensure_process_lock()
+    return _backend_module(_spec_by_kind(str(variant["kind"])))
+
+
+def load_native_module():
+    module = load_backend_module()
+    return module.load_native_module()

proteus/_proteus.py

@@ -0,0 +1,12 @@
+from ._backend import load_native_module
+
+
+_native = load_native_module()
+
+__doc__ = _native.__doc__
+__file__ = getattr(_native, "__file__", __file__)
+
+for _name in dir(_native):
+    if _name.startswith("__") and _name not in {"__doc__", "__file__"}:
+        continue
+    globals()[_name] = getattr(_native, _name)

proteus_python-2026.7.0.dist-info/METADATA

@@ -0,0 +1,287 @@
+Metadata-Version: 2.4
+Name: proteus-python
+Version: 2026.7.0
+Summary: Runtime specialization and JIT compilation built on LLVM
+Author: Giorgis Georgakoudis
+License: Apache-2.0 WITH LLVM-exception
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Developers
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3 :: Only
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
+Classifier: Programming Language :: C++
+Classifier: Topic :: Software Development :: Compilers
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+License-File: NOTICE
+Dynamic: author
+Dynamic: classifier
+Dynamic: description
+Dynamic: description-content-type
+Dynamic: license
+Dynamic: license-file
+Dynamic: requires-python
+Dynamic: summary
+
+[![docs (gh-pages)](https://github.com/Olympus-HPC/proteus/actions/workflows/gh-pages-docs.yml/badge.svg)](https://github.com/Olympus-HPC/proteus/actions/workflows/gh-pages-docs.yml)
+[![Build and test](https://github.com/Olympus-HPC/proteus/actions/workflows/ci-build-test.yml/badge.svg)](https://github.com/Olympus-HPC/proteus/actions/workflows/ci-build-test.yml)
+[![codecov](https://codecov.io/github/Olympus-HPC/proteus/graph/badge.svg?token=MEB0M2D0AC)](https://codecov.io/github/Olympus-HPC/proteus)
+[![pre-commit](https://img.shields.io/badge/pre--commit-enabled-brightgreen?logo=pre-commit)](https://github.com/pre-commit/pre-commit)
+![License: Apache 2.0 with LLVM exceptions](https://img.shields.io/badge/license-Apache%202.0%20with%20LLVM%20exceptions-blue.svg)
+
+# <img src="docs/assets/proteus-logo.png" width="128" align="middle" /> Proteus
+
+Proteus is a programmable runtime specialization and Just-In-Time (JIT) layer
+built on LLVM. It embeds into existing C++ codebases and accelerates host, CUDA,
+and HIP applications by using runtime context to specialize code and enable
+optimizations beyond static compilation.
+
+## Description
+Standard ahead-of-time (AOT) compilation can only optimize a program with the
+information available at build time. Proteus goes further by embedding
+optimizing JIT compilation directly into C/C++ applications.
+
+Runtime context, such as the actual values of variables during execution, lets
+it **specialize** code on the fly and apply advanced compiler optimizations that
+accelerate performance beyond what static compilation allows.
+
+Several frontends are available, depending on how you want to describe JIT code:
+
+| Interface | Input style | Best for | Specialization model | Requires Clang AOT? |
+| --- | --- | --- | --- | --- |
+| **Code annotations** | Existing C/C++/CUDA/HIP code | Incremental adoption in existing applications | Values, arrays, objects, and launch configuration | Yes |
+| **C++ frontend API** | C++ source strings | Runtime-generated C++ and templates | Values, arrays, objects, and launch configuration | No |
+| **LLVM IR frontend API** | LLVM IR text or bitcode | Reusing externally generated LLVM IR with Proteus caching and dispatch | Encoded in the provided LLVM IR | No |
+| **MLIR frontend API** | MLIR source strings | Direct access to MLIR lowering | Encoded in the provided MLIR source | No |
+| **Embedded DSL API** | Programmatic builders | Runtime code generation with high-level constructs | Values, arrays, and launch configuration | No |
+
+These frontends can target host, CUDA, and HIP execution paths, with backend
+support depending on how Proteus was configured:
+
+| Interface | Host | CUDA | HIP | Notes |
+| --- | --- | --- | --- | --- |
+| **Code annotations** | Yes | Yes | Yes | Requires compiling with Clang and uses the Proteus LLVM pass |
+| **C++ frontend API** | Yes | Yes | Yes | Uses Clang by default; CUDA paths can use NVCC |
+| **LLVM IR frontend API** | Yes | Yes | Yes | Accepts LLVM IR text or bitcode and compiles it directly through LLVM |
+| **MLIR frontend API** | Yes | Yes | Yes | Requires `PROTEUS_ENABLE_MLIR=ON` |
+| **Embedded DSL API** | Yes | Yes | Yes | Uses the LLVM backend by default; MLIR backend requires `PROTEUS_ENABLE_MLIR=ON` |
+
+CUDA, HIP, and MLIR support are available when Proteus is built with the
+corresponding configuration options enabled.
+
+Proteus includes both in-memory and persistent caching, ensuring that once code
+has been compiled and optimized, the cost of recompilation is avoided.
+
+Proteus consists of an LLVM pass and a runtime library that implements JIT
+compilation and optimization using LLVM as a library.
+
+* The **code annotation** interface requires compiling your application with Clang so the Proteus LLVM pass can parse annotations.
+* The **DSL**, **C++ frontend**, **LLVM IR frontend**, and **MLIR frontend** APIs don’t depend on which AOT compiler you use.
+
+In all cases, you link your application against the Proteus runtime library.
+Details are provided [later](#integrating-with-your-build-system).
+
+## Installation
+Python API users can install `proteus-python` from wheels. C++ users should
+install Proteus from source or via [spack](https://github.com/spack/spack).
+
+### Spack
+We provide a packaging recipe for Spack in the subdirectory `packaging/spack`.
+
+Assuming you have a Spack installation and preferably using an isolated Spack
+environment, you can add the spack repo by cloning Proteus and then install it
+by running:
+```bash
+git clone https://github.com/Olympus-HPC/proteus.git
+spack repo add proteus/packaging/spack
+spack install proteus
+```
+
+We provide several variants to match different configurations, including CUDA,
+ROCm, and MPI support.
+A complete list of variants and their descriptions is available in the Spack
+package file, or viewable through:
+```bash
+spack info proteus
+```
+
+Some typical examples:
+```bash
+# Install the latest version with CUDA support for sm_90 arch.
+spack install proteus +cuda cuda_arch=90
+
+# Install the latest version with ROCm support for gfx942 arch.
+spack install proteus +rocm amdgpu_target=gfx942
+
+# Install the latest version with MPI support.
+spack install proteus +mpi
+```
+
+### Building from source
+The project uses `cmake` and requires an LLVM installation.
+CI tests currently cover LLVM 19, 20, 22 with CUDA versions 12.2, and AMD
+ROCm versions 6.4.3 (based on LLVM 19), 7.1.1 (based on LLVM 20), 7.2.0 (based
+on LLVM 22).
+
+See the top-level `CMakeLists.txt` for the available build options.
+A typical build looks like this:
+```
+mkdir -p build && cd build
+cmake -DLLVM_INSTALL_DIR=<llvm_install_path> -DCMAKE_INSTALL_PREFIX=<install_path> ..
+make install
+```
+
+The `scripts` directory contains setup scripts for building on different targets
+(host-only, CUDA, ROCm) used on LLNL machines.
+They also serve as good starting points to adapt for other environments.
+Run them from the repository root:
+```bash
+source scripts/setup-<target>.sh
+```
+These scripts load environment modules (specific to LLNL systems) and create a
+`build-<hostname>-<target>-<version>` directory with a
+working configuration.
+
+### Python wheels
+Proteus now publishes a thin `proteus-python` shim package plus backend wheels.
+The default install is shim-only from PyPI. Install an explicit backend from
+the Olympus-HPC wheel index.
+
+The shim package provides the Python import surface and backend discovery. The
+native payload lives in backend-specific wheels published outside PyPI.
+
+| Install | Backend | Target | Required compiler/toolchain |
+| --- | --- | --- | --- |
+| `pip install proteus-python` | shim only | Python API only | none |
+| `pip install --index-url https://olympus-hpc.github.io/proteus/wheels/simple/ proteus-python-backend-host-llvm22` | `proteus-python-backend-host-llvm22` | Host CPU | LLVM/Clang 22.x |
+| `pip install --index-url https://olympus-hpc.github.io/proteus/wheels/simple/ proteus-python-backend-cuda12-llvm22` | `proteus-python-backend-cuda12-llvm22` | Host CPU + NVIDIA CUDA GPU | CUDA 12.x plus LLVM/Clang 22.x |
+| `pip install --index-url https://olympus-hpc.github.io/proteus/wheels/simple/ proteus-python-backend-rocm72` | `proteus-python-backend-rocm72` | Host CPU + AMD ROCm GPU | ROCm 7.2.x |
+
+Typical stable installs:
+
+```bash
+python -m pip install proteus-python
+python -m pip install --index-url https://olympus-hpc.github.io/proteus/wheels/simple/ \
+  proteus-python-backend-host-llvm22
+```
+
+```bash
+python -m pip install proteus-python
+python -m pip install --index-url https://olympus-hpc.github.io/proteus/wheels/simple/ \
+  proteus-python-backend-cuda12-llvm22
+```
+
+```bash
+python -m pip install proteus-python
+python -m pip install --index-url https://olympus-hpc.github.io/proteus/wheels/simple/ \
+  proteus-python-backend-rocm72
+```
+
+See [docs/dev/python-wheel.md](docs/dev/python-wheel.md) for packaging and
+release details.
+
+## Integrating with your build system
+
+### CMake
+To integrate Proteus with CMake, add the install prefix to `CMAKE_PREFIX_PATH`,
+or pass it explicitly with
+`-Dproteus_DIR=<install_path>/<libdir>/cmake/proteus` during configuration
+where `<libdir>` is typically `lib` or `lib64`.
+Then, in your project's `CMakeLists.txt` add:
+```cmake
+find_package(proteus CONFIG REQUIRED)
+
+add_proteus(<target>)
+```
+
+If you only need the DSL, C++ frontend, LLVM IR frontend, or MLIR frontend APIs, you can link directly against
+`proteusFrontend`.
+In this case, you don’t need to compile your target with Clang:
+
+```cmake
+find_package(proteus CONFIG REQUIRED)
+
+target_link_libraries(<target> ... proteusFrontend ...)
+```
+
+### Make
+With `make`, annotation-based integration requires adding compilation and
+linking flags, for example:
+```bash
+CXXFLAGS += -I<install_path>/include -fpass-plugin=<install_path>/<libdir>/libProteusPass.so
+
+LDFLAGS += -L<install_path>/<libdir> -Wl,-rpath,<install_path>/<libdir> -lproteus $(llvm-config --libs) -lclang-cpp
+```
+If you don't use code annotations, you can omit the `-fpass-plugin` option,
+since the LLVM pass is only needed for processing annotations.
+
+## Using
+
+Proteus's core optimization technique is **runtime constant folding**.
+It replaces runtime values with constants during JIT compilation, which in turn
+turbo-charges classical compiler optimizations such as loop unrolling,
+control-flow simplification, and constant propagation.
+Think of it as doing `constexpr`, but at runtime.
+
+Values that can be folded include function or kernel arguments, kernel launch
+dimensions, launch bounds, and other runtime variables.
+
+Choose the interface that matches how your application wants to describe JIT
+work:
+
+| Interface | Detailed guide |
+| --- | --- |
+| Code annotations | [Code Annotations](https://olympus-hpc.github.io/proteus/user/annotations/) |
+| C++ frontend API | [C++ Frontend API](https://olympus-hpc.github.io/proteus/user/cpp-frontend/) |
+| LLVM IR frontend API | [LLVM IR Frontend API](https://olympus-hpc.github.io/proteus/user/llvmir-frontend/) |
+| MLIR frontend API | [MLIR Frontend API](https://olympus-hpc.github.io/proteus/user/mlir-frontend/) |
+| DSL API | [DSL API](https://olympus-hpc.github.io/proteus/user/dsl/) |
+
+Proteus generates a unique specialization for each distinct set of runtime
+values and caches them in memory and on disk, so JIT overhead is minimized
+within and across runs.
+
+## Documentation
+
+The [Proteus documentation](https://olympus-hpc.github.io/proteus/) has more extensive information,
+including a user's guide and developer manual.
+
+## Contributing
+
+We welcome contributions to Proteus in the form of pull requests targeting the
+`main` branch of the repo, as well as questions, feature requests, or bug reports
+via issues.
+
+## Code of Conduct
+
+Please note that Proteus has a [Code of Conduct](CODE_OF_CONDUCT.md).
+By participating in the Proteus community, you agree to abide by its rules.
+
+## Authors
+Proteus was created by Giorgis Georgakoudis, georgakoudis1@llnl.gov.
+
+Key contributors are:
+- David Beckingsale, beckingsale1@llnl.gov
+- Konstantinos Parasyris, parasyris1@llnl.gov
+- John Bowen, bowen36@llnl.gov
+- Zane Fink, fink12@llnl.gov
+- Tal Ben Nun, bennun2@llnl.gov
+- Thomas Stitt, stitt4@llnl.gov
+
+## License
+
+Proteus is distributed under the terms of the Apache License (Version 2.0) with
+LLVM Exceptions.
+
+All new contributions must be made under the Apache-2.0 with LLVM Exceptions license.
+
+See [LICENSE](LICENSE), [COPYRIGHT](COPYRIGHT), and [NOTICE](NOTICE) for details.
+
+SPDX-License-Identifier: (Apache-2.0 WITH LLVM-exception)
+
+LLNL-CODE-2000857

proteus_python-2026.7.0.dist-info/RECORD

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proteus_python-2026.7.0.dist-info/WHEEL

@@ -0,0 +1,5 @@
+Wheel-Version: 1.0
+Generator: setuptools (82.0.1)
+Root-Is-Purelib: true
+Tag: py3-none-any
+

proteus_python-2026.7.0.dist-info/licenses/LICENSE

@@ -0,0 +1,218 @@
+                                 Apache License
+                           Version 2.0, January 2004
+                        http://www.apache.org/licenses/
+
+    TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
+    1. Definitions.
+
+      "License" shall mean the terms and conditions for use, reproduction,
+      and distribution as defined by Sections 1 through 9 of this document.
+
+      "Licensor" shall mean the copyright owner or entity authorized by
+      the copyright owner that is granting the License.
+
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proteus_python-2026.7.0.dist-info/licenses/NOTICE

@@ -0,0 +1,16 @@
+This work was produced under the auspices of the U.S. Department of Energy by
+Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.
+
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+and shall not be used for advertising or product endorsement purposes.

proteus_python-2026.7.0.dist-info/top_level.txt

@@ -0,0 +1 @@
+proteus