proteomics-foundation 0.3.8__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- LICENSE +192 -0
- NOTICE +3 -0
- proteomics_foundation/__init__.py +36 -0
- proteomics_foundation/py.typed +1 -0
- proteomics_foundation-0.3.8.dist-info/METADATA +205 -0
- proteomics_foundation-0.3.8.dist-info/RECORD +9 -0
- proteomics_foundation-0.3.8.dist-info/WHEEL +4 -0
- proteomics_foundation-0.3.8.dist-info/licenses/LICENSE +192 -0
- proteomics_foundation-0.3.8.dist-info/licenses/NOTICE +3 -0
LICENSE
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END OF TERMS AND CONDITIONS
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APPENDIX: How to apply the Apache License to your work.
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Copyright 2026 Bijan Mousavi <bijan@bijux.io>
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Licensed under the Apache License, Version 2.0 (the "License");
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Unless required by applicable law or agreed to in writing, software
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WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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See the License for the specific language governing permissions and
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limitations under the License.
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NOTICE
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"""Compatibility alias module for bijux-proteomics-foundation."""
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from __future__ import annotations
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from importlib import import_module
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from typing import Any
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from bijux_proteomics_foundation._package_aliases import (
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alias_package_version,
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canonical_module_dir,
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install_import_aliases,
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)
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_ALIAS_PACKAGE = "proteomics_foundation"
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_CANONICAL_PACKAGE = "bijux_proteomics_foundation"
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_LOCAL_SUBMODULES: frozenset[str] = frozenset()
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install_import_aliases(
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alias_package=_ALIAS_PACKAGE,
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canonical_package=_CANONICAL_PACKAGE,
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local_submodules=_LOCAL_SUBMODULES,
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)
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__version__ = alias_package_version("proteomics-foundation")
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__all__ = ["__version__"]
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def __getattr__(name: str) -> Any:
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"""Forward top-level compatibility lookups to the canonical foundation package."""
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return getattr(import_module(_CANONICAL_PACKAGE), name)
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def __dir__() -> list[str]:
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"""Expose canonical foundation attributes in interactive discovery."""
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return canonical_module_dir(globals(), _CANONICAL_PACKAGE)
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Metadata-Version: 2.4
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Name: proteomics-foundation
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Version: 0.3.8
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Summary: Install and import alias package for bijux-proteomics-foundation.
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Project-URL: Homepage, https://bijux.io/bijux-proteomics/
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Project-URL: Documentation, https://bijux.io/bijux-proteomics/03-bijux-proteomics-foundation/
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Project-URL: Repository, https://github.com/bijux/bijux-proteomics
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Project-URL: Issues, https://github.com/bijux/bijux-proteomics/issues
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Project-URL: Changelog, https://github.com/bijux/bijux-proteomics/blob/main/packages/proteomics-foundation/CHANGELOG.md
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Project-URL: Security, https://github.com/bijux/bijux-proteomics/blob/main/SECURITY.md
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Author-email: Bijan Mousavi <bijan@bijux.io>
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Maintainer-email: Bijan Mousavi <bijan@bijux.io>
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License: Apache-2.0
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License-File: LICENSE
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License-File: NOTICE
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Keywords: compatibility,foundation,packaging,proteomics
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Classifier: Development Status :: 3 - Alpha
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Classifier: Intended Audience :: Developers
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Classifier: Intended Audience :: Science/Research
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Classifier: License :: OSI Approved :: Apache Software License
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Classifier: Operating System :: OS Independent
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Classifier: Programming Language :: Python :: 3
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Classifier: Programming Language :: Python :: 3 :: Only
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Classifier: Programming Language :: Python :: 3.11
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Classifier: Programming Language :: Python :: 3.12
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Classifier: Programming Language :: Python :: 3.13
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Classifier: Programming Language :: Python :: 3.14
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Classifier: Typing :: Typed
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Requires-Python: <4,>=3.11
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Requires-Dist: bijux-proteomics-foundation<0.4.0,>=0.3.8
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Description-Content-Type: text/markdown
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# proteomics-foundation
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<!-- bijux-proteomics-badges:generated:start -->
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[](https://pypi.org/project/proteomics-foundation/)
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[-0A7BBB)](https://pypi.org/project/proteomics-foundation/)
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[](https://github.com/bijux/bijux-proteomics/blob/main/LICENSE)
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[](https://github.com/bijux/bijux-proteomics/actions/workflows/verify.yml?query=branch%3Amain)
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[](https://github.com/bijux/bijux-proteomics)
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[](https://pypi.org/project/proteomics-foundation/)
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[](https://pypi.org/project/agentic-proteins/)
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[](https://pypi.org/project/bijux-proteomics-foundation/)
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[](https://pypi.org/project/bijux-proteomics-core/)
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[](https://pypi.org/project/bijux-proteomics-runtime/)
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[](https://pypi.org/project/bijux-proteomics-intelligence/)
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[](https://pypi.org/project/bijux-proteomics-knowledge/)
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[](https://pypi.org/project/bijux-proteomics-lab/)
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[](https://github.com/bijux/bijux-proteomics/pkgs/container/bijux-proteomics%2Fagentic-proteins)
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[](https://github.com/bijux/bijux-proteomics/pkgs/container/bijux-proteomics%2Fbijux-proteomics-foundation)
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[](https://github.com/bijux/bijux-proteomics/pkgs/container/bijux-proteomics%2Fbijux-proteomics-core)
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[](https://github.com/bijux/bijux-proteomics/pkgs/container/bijux-proteomics%2Fbijux-proteomics-intelligence)
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[](https://github.com/bijux/bijux-proteomics/pkgs/container/bijux-proteomics%2Fbijux-proteomics-knowledge)
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[](https://github.com/bijux/bijux-proteomics/pkgs/container/bijux-proteomics%2Fbijux-proteomics-lab)
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[](https://bijux.io/bijux-proteomics/03-bijux-proteomics-foundation/)
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[](https://bijux.io/bijux-proteomics/02-agentic-proteins/)
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[](https://bijux.io/bijux-proteomics/03-bijux-proteomics-foundation/)
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[](https://bijux.io/bijux-proteomics/04-bijux-proteomics-core/)
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[](https://bijux.io/bijux-proteomics/09-bijux-proteomics-runtime/)
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[](https://bijux.io/bijux-proteomics/05-bijux-proteomics-intelligence/)
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[](https://bijux.io/bijux-proteomics/06-bijux-proteomics-knowledge/)
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[](https://bijux.io/bijux-proteomics/07-bijux-proteomics-lab/)
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<!-- bijux-proteomics-badges:generated:end -->
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`proteomics-foundation` is the compatibility alias for the canonical foundation
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owner `bijux-proteomics-foundation`.
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It is the install and import alias for bijux-proteomics-foundation.
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Use this package when you want a shorter distribution and import name for the
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## Alias at a glance
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shared kernel without changing who owns the contracts.
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[canonical foundation package docs](https://bijux.io/bijux-proteomics/03-bijux-proteomics-foundation/)
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because this package only forwards into that owner surface.
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naming.
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## Installation
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## Public APIs
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`proteomics_foundation`:
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)
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payload = {
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}
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rendered = to_canonical_json(payload)
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digest = hash_payload(payload)
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assert '"readme_example"' in rendered
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assert digest
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```
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## Package identity
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- Distribution name: `proteomics-foundation`
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- Import root: `proteomics_foundation`
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- Canonical owner package: `bijux-proteomics-foundation`
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- Canonical owner import root: `bijux_proteomics_foundation`
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## Package boundaries
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## What this package must not do
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## Contract checkpoints
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## Choose this package when
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## Route elsewhere when
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- the change alters schema, serialization, compatibility, or outcome behavior
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- the alias would stop being forwarding-only
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## Verification route
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- run alias compatibility tests before changing imports or metadata
|
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- review `docs/ARCHITECTURE.md`, `docs/BOUNDARIES.md`, and `docs/CONTRACTS.md`
|
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when alias claims or routing language change
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- validate the canonical foundation README and tests when behavior changes are
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proposed
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## Review questions
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- does the change preserve this package as a naming alias only
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- is the canonical foundation owner still explicit in docs and behavior
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- would the same outcome remain correct if consumers imported the canonical
|
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package directly
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## Escalation route
|
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|
+
|
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- route kernel behavior changes to `bijux-proteomics-foundation`
|
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- stop and review alias boundaries when package-local semantics start appearing
|
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- escalate before release when import or metadata drift could confuse ownership
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|
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## Consumer impact signals
|
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+
|
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|
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- import-path or package-name changes are high-impact because downstream code
|
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|
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may depend on them directly
|
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|
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- alias documentation changes should still be reviewed against the canonical
|
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|
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foundation owner
|
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- wording-only clarifications carry lower release risk than routing or metadata
|
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|
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changes
|
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|
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|
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## Explicit non-goals
|
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|
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- this package does not own scientific workflow or evidence semantics
|
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- this package does not define runtime, intelligence, knowledge, or lab policy
|
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- this package does not replace the canonical foundation release surface
|
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|
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## Documentation
|
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- Release guidance lives in this `README.md`, this package `CHANGELOG.md`, and
|
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package `docs/*.md` under the canonical foundation owner surface.
|
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|
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- [Product architecture](https://bijux.io/bijux-proteomics/01-bijux-proteomics/foundation/product-architecture/)
|
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|
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- [Cross-package ownership](https://bijux.io/bijux-proteomics/01-bijux-proteomics/foundation/cross-package-ownership/)
|
|
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|
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- [Canonical foundation package docs](https://bijux.io/bijux-proteomics/03-bijux-proteomics-foundation/)
|
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- [Changelog](CHANGELOG.md)
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proteomics_foundation/__init__.py,sha256=wNZ_fDiUMuZSadPktJK8D0NM-sJxXvM-zEtWUxU-vDQ,1030
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proteomics_foundation/py.typed,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
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LICENSE,sha256=iajBAJ7hjmqKMNLH08a20tPiniMNzlLDKrDYSKCfbeI,10865
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NOTICE,sha256=wQxicjRQ_-O8q8-3cmGAZ8BTLQyw8Lsuho_SNrZ772A,114
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proteomics_foundation-0.3.8.dist-info/METADATA,sha256=LVkMIbbpYxLyPYyJOk-0SIE38PDJIVh2RpRxbaSp6I4,11458
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proteomics_foundation-0.3.8.dist-info/WHEEL,sha256=mffPy8wBnZQn2VnJUU5jE99KsxaSfiyMHV9Yt0aLVxs,87
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|
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proteomics_foundation-0.3.8.dist-info/licenses/LICENSE,sha256=iajBAJ7hjmqKMNLH08a20tPiniMNzlLDKrDYSKCfbeI,10865
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proteomics_foundation-0.3.8.dist-info/licenses/NOTICE,sha256=wQxicjRQ_-O8q8-3cmGAZ8BTLQyw8Lsuho_SNrZ772A,114
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proteomics_foundation-0.3.8.dist-info/RECORD,,
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|
@@ -0,0 +1,192 @@
|
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1
|
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Apache License
|
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2
|
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Version 2.0, January 2004
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http://www.apache.org/licenses/
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TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
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APPENDIX: How to apply the Apache License to your work.
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Copyright 2026 Bijan Mousavi <bijan@bijux.io>
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Licensed under the Apache License, Version 2.0 (the "License");
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