proteomics-core 0.3.8__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- LICENSE +192 -0
- NOTICE +3 -0
- proteomics_core/__init__.py +36 -0
- proteomics_core/__main__.py +8 -0
- proteomics_core/cli.py +19 -0
- proteomics_core/py.typed +1 -0
- proteomics_core-0.3.8.dist-info/METADATA +192 -0
- proteomics_core-0.3.8.dist-info/RECORD +12 -0
- proteomics_core-0.3.8.dist-info/WHEEL +4 -0
- proteomics_core-0.3.8.dist-info/entry_points.txt +2 -0
- proteomics_core-0.3.8.dist-info/licenses/LICENSE +192 -0
- proteomics_core-0.3.8.dist-info/licenses/NOTICE +3 -0
LICENSE
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Apache License
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END OF TERMS AND CONDITIONS
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APPENDIX: How to apply the Apache License to your work.
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Copyright 2026 Bijan Mousavi <bijan@bijux.io>
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Licensed under the Apache License, Version 2.0 (the "License");
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See the License for the specific language governing permissions and
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NOTICE
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"""Compatibility alias module for bijux-proteomics-core."""
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from __future__ import annotations
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from importlib import import_module
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from typing import Any
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from bijux_proteomics_foundation._package_aliases import (
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alias_package_version,
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canonical_module_dir,
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install_import_aliases,
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)
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_ALIAS_PACKAGE = "proteomics_core"
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_CANONICAL_PACKAGE = "bijux_proteomics"
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_LOCAL_SUBMODULES = frozenset({"__main__", "cli"})
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install_import_aliases(
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alias_package=_ALIAS_PACKAGE,
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canonical_package=_CANONICAL_PACKAGE,
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local_submodules=_LOCAL_SUBMODULES,
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)
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__version__ = alias_package_version("proteomics-core")
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__all__ = ["__version__"]
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def __getattr__(name: str) -> Any:
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"""Forward top-level compatibility lookups to the canonical core package."""
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return getattr(import_module(_CANONICAL_PACKAGE), name)
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def __dir__() -> list[str]:
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"""Expose canonical core attributes in interactive discovery."""
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return canonical_module_dir(globals(), _CANONICAL_PACKAGE)
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proteomics_core/cli.py
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"""Compatibility CLI entrypoint for the `proteomics-core` distribution."""
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from __future__ import annotations
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from collections.abc import Sequence
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from bijux_proteomics_foundation._package_aliases import dispatch_alias_entrypoint
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__all__ = ["main"]
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def main(argv: Sequence[str] | None = None) -> int:
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"""Run the canonical core CLI with the alias package name."""
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return dispatch_alias_entrypoint(
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canonical_module="bijux_proteomics.interfaces.cli",
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attribute_name="cli",
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prog_name="proteomics-core",
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argv=argv,
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)
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proteomics_core/py.typed
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Metadata-Version: 2.4
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Name: proteomics-core
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Version: 0.3.8
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Summary: Install and import alias package for bijux-proteomics-core.
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Project-URL: Homepage, https://bijux.io/bijux-proteomics/
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Project-URL: Documentation, https://bijux.io/bijux-proteomics/04-bijux-proteomics-core/
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Project-URL: Repository, https://github.com/bijux/bijux-proteomics
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Project-URL: Issues, https://github.com/bijux/bijux-proteomics/issues
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Project-URL: Changelog, https://github.com/bijux/bijux-proteomics/blob/main/packages/proteomics-core/CHANGELOG.md
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Project-URL: Security, https://github.com/bijux/bijux-proteomics/blob/main/SECURITY.md
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Author-email: Bijan Mousavi <bijan@bijux.io>
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Maintainer-email: Bijan Mousavi <bijan@bijux.io>
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License: Apache-2.0
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License-File: LICENSE
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License-File: NOTICE
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Keywords: bioinformatics,compatibility,packaging,proteomics
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Classifier: Development Status :: 3 - Alpha
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Classifier: Intended Audience :: Developers
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Classifier: Intended Audience :: Science/Research
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Classifier: License :: OSI Approved :: Apache Software License
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Classifier: Operating System :: OS Independent
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Classifier: Programming Language :: Python :: 3
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Classifier: Programming Language :: Python :: 3 :: Only
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Classifier: Programming Language :: Python :: 3.11
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Classifier: Programming Language :: Python :: 3.12
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Classifier: Programming Language :: Python :: 3.13
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Classifier: Programming Language :: Python :: 3.14
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Classifier: Typing :: Typed
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Requires-Python: <4,>=3.11
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Requires-Dist: bijux-proteomics-core<0.4.0,>=0.3.8
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Requires-Dist: bijux-proteomics-foundation<0.4.0,>=0.3.8
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Description-Content-Type: text/markdown
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# proteomics-core
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<!-- bijux-proteomics-badges:generated:start -->
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[](https://pypi.org/project/proteomics-core/)
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[-0A7BBB)](https://pypi.org/project/proteomics-core/)
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[](https://github.com/bijux/bijux-proteomics/blob/main/LICENSE)
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[](https://github.com/bijux/bijux-proteomics/actions/workflows/verify.yml?query=branch%3Amain)
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[](https://github.com/bijux/bijux-proteomics)
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[](https://pypi.org/project/proteomics-core/)
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[](https://pypi.org/project/agentic-proteins/)
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[](https://pypi.org/project/bijux-proteomics-foundation/)
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[](https://pypi.org/project/bijux-proteomics-core/)
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[](https://pypi.org/project/bijux-proteomics-runtime/)
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[](https://pypi.org/project/bijux-proteomics-intelligence/)
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[](https://pypi.org/project/bijux-proteomics-knowledge/)
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[](https://pypi.org/project/bijux-proteomics-lab/)
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[](https://github.com/bijux/bijux-proteomics/pkgs/container/bijux-proteomics%2Fagentic-proteins)
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[](https://github.com/bijux/bijux-proteomics/pkgs/container/bijux-proteomics%2Fbijux-proteomics-foundation)
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[](https://github.com/bijux/bijux-proteomics/pkgs/container/bijux-proteomics%2Fbijux-proteomics-core)
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[](https://github.com/bijux/bijux-proteomics/pkgs/container/bijux-proteomics%2Fbijux-proteomics-intelligence)
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[](https://github.com/bijux/bijux-proteomics/pkgs/container/bijux-proteomics%2Fbijux-proteomics-knowledge)
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[](https://github.com/bijux/bijux-proteomics/pkgs/container/bijux-proteomics%2Fbijux-proteomics-lab)
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[](https://bijux.io/bijux-proteomics/04-bijux-proteomics-core/)
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[](https://bijux.io/bijux-proteomics/02-agentic-proteins/)
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[](https://bijux.io/bijux-proteomics/03-bijux-proteomics-foundation/)
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[](https://bijux.io/bijux-proteomics/04-bijux-proteomics-core/)
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[](https://bijux.io/bijux-proteomics/09-bijux-proteomics-runtime/)
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[](https://bijux.io/bijux-proteomics/05-bijux-proteomics-intelligence/)
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[](https://bijux.io/bijux-proteomics/06-bijux-proteomics-knowledge/)
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<!-- bijux-proteomics-badges:generated:end -->
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`proteomics-core` is the compatibility alias for the canonical core owner
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`bijux-proteomics-core`.
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It is the install and import alias for bijux-proteomics-core.
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on compatibility naming and import forwarding.
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## Installation
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report = parse_fasta_document(">sp|P11111|PTM1 Protein 1\nMPEPTIDEK\n")
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## Package identity
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## Choose this package when
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## Verification route
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when alias claims or boundaries shift
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proposed
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## Review questions
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## Escalation route
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- route scientific behavior changes to `bijux-proteomics-core`
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- stop and review boundaries when the alias starts gaining package-local logic
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- escalate before release when package metadata or import routing could confuse
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core ownership
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## Consumer impact signals
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- import-path or package-name changes are high-impact because downstream code
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may import this alias directly
|
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- alias contract wording changes should still be reviewed against canonical core
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- documentation-only clarifications carry lower release risk than routing or
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metadata changes
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## Explicit non-goals
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- this package does not own assay-processing or workflow semantics
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- this package does not define runtime, intelligence, knowledge, or lab policy
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- this package does not replace the canonical core release surface
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## Documentation
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- Release guidance lives in this `README.md`, this package `CHANGELOG.md`, and
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package `docs/*.md` under the canonical core owner surface.
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- [Product architecture](https://bijux.io/bijux-proteomics/01-bijux-proteomics/foundation/product-architecture/)
|
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- [Cross-package ownership](https://bijux.io/bijux-proteomics/01-bijux-proteomics/foundation/cross-package-ownership/)
|
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- [Canonical core package docs](https://bijux.io/bijux-proteomics/04-bijux-proteomics-core/)
|
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- [Changelog](CHANGELOG.md)
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proteomics_core/__init__.py,sha256=xa5TtJNQR-19nTyiUwhDuwcj8bokcNAivzwJPMArIdo,992
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proteomics_core/__main__.py,sha256=w09Xx8you12VED5vOQKlJVfT4CYce0zfHoPRuXZQSxA,177
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proteomics_core/cli.py,sha256=xh5VOlMCKPkdHSXc3hjPsml4S6t6cRL986WMXdGCOE0,563
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proteomics_core/py.typed,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
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LICENSE,sha256=iajBAJ7hjmqKMNLH08a20tPiniMNzlLDKrDYSKCfbeI,10865
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NOTICE,sha256=wQxicjRQ_-O8q8-3cmGAZ8BTLQyw8Lsuho_SNrZ772A,114
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proteomics_core-0.3.8.dist-info/METADATA,sha256=cgMkMSO6BnlDStMEEeiMuSUX56BSquHrFWRPSBXgEjM,11051
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|
+
proteomics_core-0.3.8.dist-info/WHEEL,sha256=mffPy8wBnZQn2VnJUU5jE99KsxaSfiyMHV9Yt0aLVxs,87
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proteomics_core-0.3.8.dist-info/entry_points.txt,sha256=CgYS8qJjp2R7Y4AaiaTwefl3_Dc-pEpKbC_R_bAvLFA,61
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proteomics_core-0.3.8.dist-info/licenses/LICENSE,sha256=iajBAJ7hjmqKMNLH08a20tPiniMNzlLDKrDYSKCfbeI,10865
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proteomics_core-0.3.8.dist-info/licenses/NOTICE,sha256=wQxicjRQ_-O8q8-3cmGAZ8BTLQyw8Lsuho_SNrZ772A,114
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proteomics_core-0.3.8.dist-info/RECORD,,
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Apache License
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Version 2.0, January 2004
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TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
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