protein-quest 0.5.0__py3-none-any.whl → 0.5.1__py3-none-any.whl

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Files changed (7) hide show
  1. protein_quest/__version__.py +1 -1
  2. protein_quest/uniprot.py +7 -3
  3. {protein_quest-0.5.0.dist-info → protein_quest-0.5.1.dist-info}/METADATA +1 -1
  4. {protein_quest-0.5.0.dist-info → protein_quest-0.5.1.dist-info}/RECORD +7 -7
  5. {protein_quest-0.5.0.dist-info → protein_quest-0.5.1.dist-info}/WHEEL +0 -0
  6. {protein_quest-0.5.0.dist-info → protein_quest-0.5.1.dist-info}/entry_points.txt +0 -0
  7. {protein_quest-0.5.0.dist-info → protein_quest-0.5.1.dist-info}/licenses/LICENSE +0 -0
protein_quest/__version__.py CHANGED
@@ -1,2 +1,2 @@
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- __version__ = "0.5.0"
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+ __version__ = "0.5.1"
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  """The version of the package."""
protein_quest/uniprot.py CHANGED
@@ -525,7 +525,9 @@ def _build_complex_sparql_query(uniprot_accs: Iterable[str], limit: int) -> str:
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  ?protein
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  ?cp_db
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  ?cp_comment
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- (GROUP_CONCAT(DISTINCT ?member; separator=",") AS ?complex_members)
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+ (GROUP_CONCAT(
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+ DISTINCT STRAFTER(STR(?member), "http://purl.uniprot.org/uniprot/"); separator=","
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+ ) AS ?complex_members)
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  (COUNT(DISTINCT ?member) AS ?member_count)
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  WHERE {
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  # Input UniProt accessions
@@ -550,7 +552,9 @@ def _build_complex_sparql_query(uniprot_accs: Iterable[str], limit: int) -> str:
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  """
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  select_clause = dedent("""\
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  ?protein ?cp_db ?cp_comment
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- (GROUP_CONCAT(DISTINCT ?member; separator=",") AS ?complex_members)
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+ (GROUP_CONCAT(
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+ DISTINCT STRAFTER(STR(?member), "http://purl.uniprot.org/uniprot/"); separator=","
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+ ) AS ?complex_members)
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  """)
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  where_clause = dedent("""
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  # --- Complex Info ---
@@ -596,7 +600,7 @@ def _flatten_results_complex(raw_results) -> list[ComplexPortalEntry]:
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  complex_id = raw_result["cp_db"]["value"].split("/")[-1]
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  complex_url = f"https://www.ebi.ac.uk/complexportal/complex/{complex_id}"
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  complex_title = raw_result.get("cp_comment", {}).get("value", "")
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- members = {m.split("/")[-1] for m in raw_result["complex_members"]["value"].split(",")}
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+ members = set(raw_result["complex_members"]["value"].split(","))
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  results.append(
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  ComplexPortalEntry(
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  query_protein=query_protein,
{protein_quest-0.5.0.dist-info → protein_quest-0.5.1.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: protein_quest
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- Version: 0.5.0
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+ Version: 0.5.1
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  Summary: Search/retrieve/filter proteins and protein structures
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  Project-URL: Homepage, https://github.com/haddocking/protein-quest
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  Project-URL: Issues, https://github.com/haddocking/protein-quest/issues
{protein_quest-0.5.0.dist-info → protein_quest-0.5.1.dist-info}/RECORD RENAMED
@@ -1,5 +1,5 @@
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  protein_quest/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- protein_quest/__version__.py,sha256=AyGZhrskazcQPC8spzJ45d4XNxgla5DnO1bmKuzRj_Q,56
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+ protein_quest/__version__.py,sha256=iRjDp09jO2JFmZdsWS3ikyYYQ8S33AzhMdrr00gEG9g,56
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  protein_quest/cli.py,sha256=xiXt_2l3MxbTbmxm2sz0w8_OdJr8gz_B68GBVv5wHjE,44182
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  protein_quest/converter.py,sha256=Y-Oxf7lDNbEicL6GS-IpNWDwaAiHgIgs5bFAcEHCKdQ,1441
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  protein_quest/emdb.py,sha256=641c6RwNYnu-0GBFyCFBiI58fNc0jMkd0ZZ9MW9-Jmc,1501
@@ -10,7 +10,7 @@ protein_quest/parallel.py,sha256=ZJrLO1t2HXs4EeNctytvBTyROPBq-4-gLf35PiolHf0,346
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  protein_quest/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  protein_quest/ss.py,sha256=qOr0aMycNAtZmXXvhCN-KZH3Qp4EejnBcE6fsFgCrmY,10343
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  protein_quest/taxonomy.py,sha256=4mKv8zll4mX02Ow8CTvyqMJE2KJZvcq3QlTjjjLOJJk,5072
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- protein_quest/uniprot.py,sha256=DIwQYzWZREZ7SGhkJT4Ozgl36pdz47FNfZ1QoEgEaXE,24239
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+ protein_quest/uniprot.py,sha256=92G5YiJAJwUBKJQHPrM6DZlaLe-XG4qBg0zy0BDGFYY,24354
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  protein_quest/utils.py,sha256=2lQ7jPHWtDySBTYnoL9VTKl5XUgQVYgp9Prb7qEnjtQ,17982
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  protein_quest/alphafold/__init__.py,sha256=Ktasi5BRp71wO7-PpOGDpIRRtBEefs8knIdlKQeLQpk,51
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  protein_quest/alphafold/confidence.py,sha256=pYIuwYdkuPuHLagcX1dSvSyZ_84xboRLfHUxkEoc4MY,6766
@@ -19,8 +19,8 @@ protein_quest/alphafold/fetch.py,sha256=wIsgPZmtnE5EoAL9G22Y6Ehx9d0md53Mw88-6LLG
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  protein_quest/pdbe/__init__.py,sha256=eNNHtN60NAGea7gvRkIzkoTXsYPK99s-ldIcKWYO6So,61
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  protein_quest/pdbe/fetch.py,sha256=e8CHWDX2QzWnVLmYXCfNrscw1UcN1lI9Uz6Z5HmEOEQ,2510
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  protein_quest/pdbe/io.py,sha256=iGLvmsD-eEYnrgZDYfkGWIDCzwDRRD5dwqB480talCs,10037
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- protein_quest-0.5.0.dist-info/METADATA,sha256=atoElM2xwPd9ubxXSQsFQYz2hjALJi-AegCRkrynEYc,9236
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- protein_quest-0.5.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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- protein_quest-0.5.0.dist-info/entry_points.txt,sha256=f1RtOxv9TFBO3w01EMEuFXBTMsqKsQcKlkxmj9zE-0g,57
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- protein_quest-0.5.0.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
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- protein_quest-0.5.0.dist-info/RECORD,,
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+ protein_quest-0.5.1.dist-info/METADATA,sha256=MPfZLLa8XC1tZ3okRYIT3Hs3pMvd8ShA17Yy2axKBe8,9236
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+ protein_quest-0.5.1.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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+ protein_quest-0.5.1.dist-info/entry_points.txt,sha256=f1RtOxv9TFBO3w01EMEuFXBTMsqKsQcKlkxmj9zE-0g,57
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+ protein_quest-0.5.1.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
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+ protein_quest-0.5.1.dist-info/RECORD,,