pninexus 3.2.1__cp37-cp37m-manylinux_2_27_x86_64.whl → 3.3.0__cp37-cp37m-manylinux_2_27_x86_64.whl

pninexus/__init__.py

@@ -1 +1,6 @@
 __path__ = __import__('pkgutil').extend_path(__path__, __name__)
+
+try:
+    from . import filters
+except ImportError:
+    pass

pninexus/filters/__init__.py

@@ -0,0 +1,7 @@
+"""
+:py:mod:`pninexus.filters` is a path setter for HDF5_PLUGIN_PATH
+"""
+import os
+from pathlib import Path
+
+os.environ["HDF5_PLUGIN_PATH"] = os.path.split(Path(__file__))[0]

pninexus/h5cpp/attribute/__init__.py

@@ -1,5 +1,6 @@
 from __future__ import print_function
 import numpy
+import sys
 
 from pninexus.h5cpp import property
 from pninexus.h5cpp._attribute import AttributeManager
@@ -8,6 +9,10 @@ from pninexus.h5cpp._attribute import Attribute
 __all__ = ["property", "AttributeManager", "Attribute"]
 
 
+if sys.version_info > (3,):
+    unicode = str
+
+
 def attribute__getitem__(self, index):
 
     data = self.read()
@@ -20,15 +25,28 @@ def attribute_write(self, data):
     write_data = data
     if not isinstance(write_data, numpy.ndarray):
         write_data = numpy.array(write_data)
-
     if write_data.dtype.kind == 'U':
-        write_data = write_data.astype("S")
+        try:
+            write_data = write_data.astype("S")
+        except Exception:
+            if isinstance(data, numpy.ndarray) and data.shape:
+                shape = data.shape
+                if len(shape) > 1:
+                    data = data.flatten()
+                write_data = numpy.array(
+                    [bytes(unicode(dt).encode('utf-8')) for dt in data])
+                if len(shape) > 1:
+                    write_data = write_data.reshape(shape)
+            else:
+                write_data = numpy.array(unicode(data).encode('utf-8'))
     elif write_data.dtype == 'bool':
         write_data = write_data.astype("int8")
 
+    #  print("DATA", data, write_data)
     try:
         self._write(write_data)
-    except RuntimeError:
+    except RuntimeError as e:
+        print(str(e))
         print(write_data, write_data.dtype)
 
 

pninexus/h5cpp/node/__init__.py

@@ -5,6 +5,7 @@ from pninexus.h5cpp import dataspace
 from pninexus.h5cpp import datatype
 from pninexus.h5cpp.filter import ExternalFilters
 import numpy
+import sys
 # from collections import OrderedDict
 
 #
@@ -45,6 +46,10 @@ except Exception:
     VDSAvailable = False
 
 
+if sys.version_info > (3,):
+    unicode = str
+
+
 def copy(node, base, path=None, link_creation_list=property.LinkCreationList(),
          object_copy_list=property.ObjectCopyList()):
     """Copy an object within the HDF5 tree
@@ -275,8 +280,19 @@ def dataset_write(self, data, selection=None):
     # if the data is a unicode numpy array we have to convert it to a
     # simple string array
     if data.dtype.kind == 'U':
-        data = data.astype('S')
-
+        try:
+            data = data.astype('S')
+        except Exception:
+            if isinstance(data, numpy.ndarray) and data.shape:
+                shape = data.shape
+                if len(shape) > 1:
+                    data = data.flatten()
+                data = numpy.array(
+                    [bytes(unicode(dt).encode('utf-8')) for dt in data])
+                if len(shape) > 1:
+                    data = data.reshape(shape)
+            else:
+                data = numpy.array(unicode(data).encode('utf-8'))
     #
     # determine memory datatype and dataspace
     # - if the file type is a variable length string we have to adjust the
@@ -286,7 +302,7 @@ def dataset_write(self, data, selection=None):
 
     if isinstance(self.datatype, datatype.String):
         if self.datatype.is_variable_length:
-            memory_type = datatype.String.variable()
+            memory_type = self.datatype
 
     # if the data is bool numpy array we have to convert it to a
     # int array

{pninexus-3.2.1.dist-info → pninexus-3.3.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pninexus
-Version: 3.2.1
+Version: 3.3.0
 Summary: Python wrapper for the H5CPP and PNI libraries
 Home-page: https://github.com/pni-libraries/python-pninexus
 Author: Eugen Wintersberger
@@ -21,6 +21,7 @@ Classifier: Programming Language :: Python :: 3.8
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
 Requires-Dist: numpy
 
 Python bindings for PNI/NeXus and h5cpp
@@ -103,8 +104,8 @@ For Python3 just replace python with python3 in the above instructions.
 Debian and Ubuntu packages
 ~~~~~~~~~~~~~~~~~~~~~~~~~~
 
-Debian ``bookworm``, ``bullseye``, ``buster`` or Ubuntu ``lunar``,
-``jammy``, ``focal`` packages can be found in the HDRI repository.
+Debian ``bookworm``, ``bullseye``, ``buster`` or Ubuntu ``oracular``,
+``noble``, ``jammy`` packages can be found in the HDRI repository.
 
 To install the debian packages, add the PGP repository key
 
@@ -114,19 +115,19 @@ To install the debian packages, add the PGP repository key
        $ curl -s http://repos.pni-hdri.de/debian_repo.pub.gpg  | gpg --no-default-keyring --keyring gnupg-ring:/etc/apt/trusted.gpg.d/debian-hdri-repo.gpg --import
        $ chmod 644 /etc/apt/trusted.gpg.d/debian-hdri-repo.gpg
 
-and then download the corresponding source list, e.g. for ``bullseye``
+and then download the corresponding source list, e.g. for ``bookworm``
 
 ::
 
        $ cd /etc/apt/sources.list.d
-       $ wget http://repos.pni-hdri.de/bullseye-pni-hdri.list
+       $ wget http://repos.pni-hdri.de/bookworm-pni-hdri.list
 
-or ``jammy``
+or ``noble``
 
 ::
 
        $ cd /etc/apt/sources.list.d
-       $ wget http://repos.pni-hdri.de/jammy-pni-hdri.list
+       $ wget http://repos.pni-hdri.de/noble-pni-hdri.list
 
 respectively.
 
@@ -135,16 +136,16 @@ Finally,
 ::
 
        $ apt-get update
-       $ apt-get install python-pninexus
+       $ apt-get install python3-pninexus
 
 or
 
 ::
 
        $ apt-get update
-       $ apt-get install python3-pninexus
+       $ apt-get install python-pninexus
 
-for python3.
+for python2.
 
 
 Manylinux wheels from PyPI
@@ -164,6 +165,12 @@ To install pninexus in a conda or python virtual environment manylinux pip wheel
 
 For some versions of wheels numpy needs to be installed in advance.
 
+Starting from v3.2.2 the pninexus wheel contains the most important external filters.
+In order to use them one needs to set HDF5_PLUGIN_PATH e.g. by
+
+.. code-block:: python
+
+   import pninexus
 
 
 More information can be found at `online

pninexus-3.3.0.dist-info/RECORD

@@ -0,0 +1,51 @@
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{pninexus-3.2.1.dist-info → pninexus-3.3.0.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.41.2)
+Generator: bdist_wheel (0.42.0)
 Root-Is-Purelib: false
 Tag: cp37-cp37m-manylinux_2_27_x86_64
 

pninexus-3.2.1.dist-info/RECORD

@@ -1,36 +0,0 @@
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