plot-io 0.12.0__py3-none-macosx_13_0_arm64.whl

plot_io/__init__.py

@@ -0,0 +1,73 @@
+"""plot_io: plots for PDF, EPS, SVG, PNG, JPEG, JPEG XL and AVIF, drawn with vec_io.
+
+Basic usage::
+
+    import plot_io as plt
+
+    s = plt.Scatter([1, 2, 3], [2, 4, 3], color="C1")
+    s.plot.x_axis(label="Time (s)")
+    s.plot.save("scatter.pdf")
+
+The names below are the public API; the submodules (``plot_io.genome``,
+``plot_io.styles``, …) are documented in docs/api.md, and the others are internal.
+"""
+
+from vec_io import Simplify, Span
+
+from . import registry
+from .axis import Axis
+from .color.maps import ColorMap
+from .colorbar import Colorbar
+from .defaults import DEFAULTS
+from .density import Density
+from .facets import facet
+from .figure import Figure
+# the plot types register before the genome series (the order of the generated methods)
+from .presets import (Area, Bar, Box, Contour, Dots, Ecdf, Errorbar, Errors, Fill, Heatmap,
+                      Hexbin, Hist, Hist2d, Kde, Kde2d, Line, Pie, Regression, Scatter, Stem,
+                      Strip, Swarm, Violin, group_summary)
+from .genome import (Bed, BigWig, Genes, Gtf, HiC, Links, SignalMatrix, SiteHeatmap,
+                     SiteProfile, Track, Tracks)
+from .layers import Series
+from .mapped import ColorAxis, SizeAxis
+from .plot import Legend, Plot, Title
+from .sizemaps import SizeMap
+from .styles import set_style, use_style
+from .ticks import every
+from .units import Expr, SettingError, calc, var
+# the helpers register after every built-in type
+from .helpers import (QQ, Dendrogram, Ma, Manhattan, Raincloud, Tree, Volcano, clustermap,
+                      joint, linkage, pairs)
+
+__all__ = [
+    # figures and plots
+    "Figure", "Plot", "Tracks", "Track", "SignalMatrix", "facet", "joint", "pairs",
+    "clustermap",
+    # plot types
+    "Scatter", "Line", "Fill", "Area", "Bar", "Hist", "Kde", "Kde2d", "Ecdf", "Box",
+    "Violin", "Strip", "Swarm", "Errorbar", "Stem", "Regression", "Heatmap", "Hist2d",
+    "Hexbin", "Contour", "Pie", "Dots", "BigWig", "Bed", "Genes", "Gtf", "HiC", "Links",
+    "SiteHeatmap", "SiteProfile",
+    # guides, for annotations and isinstance: made by their plots and figures
+    "Axis", "Legend", "Colorbar", "Title",
+    # helpers: clustering trees, dendrograms, QQ plots, rainclouds, volcano, MA, Manhattan
+    "linkage", "Tree", "Dendrogram", "QQ", "Raincloud", "Volcano", "Ma", "Manhattan",
+    # values: axes of mapped values, color maps, densities, errors, rich text
+    "ColorAxis", "SizeAxis", "ColorMap", "SizeMap", "Density", "Errors",
+    "Span", "Simplify", "group_summary", "every",
+    # values written with var() and calc(): typed as Expr
+    "Expr", "var", "calc",
+    # extension: the registries and the base of plot types
+    "registry", "Series",
+    # styles and defaults
+    "set_style", "use_style", "DEFAULTS",
+    # errors
+    "SettingError",
+    "__version__",
+]
+
+__version__ = "0.12.0"
+
+
+def __dir__() -> list[str]:
+    return list(__all__)