pixeltable 0.4.12__py3-none-any.whl → 0.4.14__py3-none-any.whl

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Files changed (55) hide show
  1. pixeltable/__init__.py +11 -1
  2. pixeltable/catalog/__init__.py +2 -1
  3. pixeltable/catalog/catalog.py +179 -63
  4. pixeltable/catalog/column.py +24 -20
  5. pixeltable/catalog/table.py +96 -124
  6. pixeltable/catalog/table_metadata.py +96 -0
  7. pixeltable/catalog/table_version.py +15 -6
  8. pixeltable/catalog/view.py +22 -22
  9. pixeltable/config.py +2 -0
  10. pixeltable/dataframe.py +3 -2
  11. pixeltable/env.py +43 -21
  12. pixeltable/exec/__init__.py +1 -0
  13. pixeltable/exec/aggregation_node.py +0 -1
  14. pixeltable/exec/cache_prefetch_node.py +74 -98
  15. pixeltable/exec/data_row_batch.py +2 -18
  16. pixeltable/exec/in_memory_data_node.py +1 -1
  17. pixeltable/exec/object_store_save_node.py +299 -0
  18. pixeltable/exec/sql_node.py +28 -33
  19. pixeltable/exprs/data_row.py +31 -25
  20. pixeltable/exprs/json_path.py +6 -5
  21. pixeltable/exprs/row_builder.py +6 -12
  22. pixeltable/functions/gemini.py +1 -1
  23. pixeltable/functions/openai.py +1 -1
  24. pixeltable/functions/video.py +5 -6
  25. pixeltable/globals.py +6 -7
  26. pixeltable/index/embedding_index.py +5 -8
  27. pixeltable/io/__init__.py +2 -1
  28. pixeltable/io/fiftyone.py +1 -1
  29. pixeltable/io/label_studio.py +4 -5
  30. pixeltable/io/lancedb.py +3 -0
  31. pixeltable/io/parquet.py +9 -89
  32. pixeltable/io/table_data_conduit.py +2 -2
  33. pixeltable/iterators/audio.py +1 -1
  34. pixeltable/iterators/document.py +10 -12
  35. pixeltable/iterators/video.py +1 -1
  36. pixeltable/metadata/schema.py +7 -0
  37. pixeltable/plan.py +26 -1
  38. pixeltable/share/packager.py +8 -2
  39. pixeltable/share/publish.py +3 -9
  40. pixeltable/type_system.py +1 -3
  41. pixeltable/utils/arrow.py +97 -2
  42. pixeltable/utils/dbms.py +31 -5
  43. pixeltable/utils/gcs_store.py +283 -0
  44. pixeltable/utils/lancedb.py +88 -0
  45. pixeltable/utils/local_store.py +316 -0
  46. pixeltable/utils/object_stores.py +497 -0
  47. pixeltable/utils/pytorch.py +5 -6
  48. pixeltable/utils/s3_store.py +354 -0
  49. {pixeltable-0.4.12.dist-info → pixeltable-0.4.14.dist-info}/METADATA +162 -127
  50. {pixeltable-0.4.12.dist-info → pixeltable-0.4.14.dist-info}/RECORD +53 -47
  51. pixeltable/utils/media_store.py +0 -248
  52. pixeltable/utils/s3.py +0 -17
  53. {pixeltable-0.4.12.dist-info → pixeltable-0.4.14.dist-info}/WHEEL +0 -0
  54. {pixeltable-0.4.12.dist-info → pixeltable-0.4.14.dist-info}/entry_points.txt +0 -0
  55. {pixeltable-0.4.12.dist-info → pixeltable-0.4.14.dist-info}/licenses/LICENSE +0 -0
@@ -0,0 +1,316 @@
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+ from __future__ import annotations
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+
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+ import glob
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+ import logging
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+ import os
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+ import re
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+ import shutil
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+ import urllib.parse
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+ import urllib.request
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+ import uuid
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+ from collections import defaultdict
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+ from pathlib import Path
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+ from typing import TYPE_CHECKING, Optional
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+ from uuid import UUID
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+
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+ import PIL.Image
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+
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+ from pixeltable import env, exceptions as excs
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+ from pixeltable.utils.object_stores import ObjectPath, ObjectStoreBase, StorageObjectAddress
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+
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+ if TYPE_CHECKING:
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+ from pixeltable.catalog import Column
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+
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+ _logger = logging.getLogger('pixeltable')
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+
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+
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+ class LocalStore(ObjectStoreBase):
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+ """
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+ Utilities to manage files stored in a local filesystem directory.
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+
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+ Media file names are a composite of: table id, column id, tbl_version, new uuid:
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+ the table id/column id/tbl_version are redundant but useful for identifying all files for a table
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+ or all files created for a particular version of a table
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+ """
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+
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+ __base_dir: Path
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+
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+ soa: Optional[StorageObjectAddress]
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+
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+ def __init__(self, location: Path | StorageObjectAddress):
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+ if isinstance(location, Path):
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+ self.__base_dir = location
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+ self.soa = None
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+ else:
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+ assert isinstance(location, StorageObjectAddress)
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+ self.__base_dir = location.to_path
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+ self.soa = location
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+
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+ def validate(self, error_col_name: str) -> str:
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+ """Convert a Column destination parameter to a URI, else raise errors."""
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+ dest_path = self.__base_dir
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+
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+ # Check if path exists and validate it's a directory
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+ if not dest_path.exists():
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+ raise excs.Error(f'{error_col_name}`destination` does not exist')
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+ if not dest_path.is_dir():
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+ raise excs.Error(f'{error_col_name}`destination` must be a directory, not a file')
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+
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+ # Check if path is absolute
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+ if dest_path.is_absolute():
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+ # Convert to file URI
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+ return dest_path.as_uri()
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+
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+ # For relative paths, convert to absolute first
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+ try:
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+ absolute_path = dest_path.resolve()
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+ return absolute_path.as_uri()
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+ except (OSError, ValueError) as e:
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+ raise excs.Error(f'{error_col_name}`destination` must be a valid path. Error: {e}') from None
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+
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+ @staticmethod
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+ def file_url_to_path(url: str) -> Optional[Path]:
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+ """Convert a file:// URI to a Path object with support for Windows UNC paths."""
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+ assert isinstance(url, str), type(url)
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+ parsed = urllib.parse.urlparse(url)
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+
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+ # Verify it's a file scheme
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+ # We should never be passed a local file path here. The "len > 1" ensures that Windows
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+ # file paths aren't mistaken for URLs with a single-character scheme.
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+ assert len(parsed.scheme) > 1, url
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+ if parsed.scheme.lower() != 'file':
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+ return None
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+
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+ pth = parsed.path
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+ if parsed.netloc:
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+ # This is a UNC path, ie, file://host/share/path/to/file
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+ pth = f'//{parsed.netloc}{pth}'
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+
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+ path_str = urllib.parse.unquote(urllib.request.url2pathname(pth))
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+ return Path(path_str)
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+
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+ @classmethod
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+ def _save_binary_media_file(cls, file_data: bytes, dest_path: Path, format: Optional[str]) -> Path:
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+ """Save binary data to a file in a LocalStore. format is ignored for binary data."""
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+ assert isinstance(file_data, bytes)
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+ with open(dest_path, 'wb') as f:
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+ f.write(file_data)
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+ f.flush() # Ensures Python buffers are written to OS
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+ os.fsync(f.fileno()) # Forces OS to write to physical storage
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+ return dest_path
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+
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+ @classmethod
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+ def _save_pil_image_file(cls, image: PIL.Image.Image, dest_path: Path, format: Optional[str]) -> Path:
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+ """Save a PIL Image to a file in a LocalStore with the specified format."""
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+ if dest_path.suffix != f'.{format}':
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+ dest_path = dest_path.with_name(f'{dest_path.name}.{format}')
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+
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+ with open(dest_path, 'wb') as f:
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+ image.save(f, format=format)
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+ f.flush() # Ensures Python buffers are written to OS
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+ os.fsync(f.fileno()) # Forces OS to write to physical storage
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+ return dest_path
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+
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+ def _prepare_path_raw(self, tbl_id: UUID, col_id: int, tbl_version: int, ext: Optional[str] = None) -> Path:
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+ """
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+ Construct a new, unique Path name in the __base_dir for a persisted file.
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+ Create the parent directory for the new Path if it does not already exist.
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+ """
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+ prefix, filename = ObjectPath.create_prefix_raw(tbl_id, col_id, tbl_version, ext)
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+ parent = self.__base_dir / Path(prefix)
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+ parent.mkdir(parents=True, exist_ok=True)
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+ return parent / filename
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+
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+ def _prepare_path(self, col: Column, ext: Optional[str] = None) -> Path:
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+ """
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+ Construct a new, unique Path name in the __base_dir for a persisted file.
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+ Create the parent directory for the new Path if it does not already exist.
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+ """
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+ assert col.tbl is not None, 'Column must be associated with a table'
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+ return self._prepare_path_raw(col.tbl.id, col.id, col.tbl.version, ext)
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+
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+ def contains_path(self, file_path: Path) -> bool:
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+ """Return True if the given path refers to a file managed by this LocalStore, else False."""
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+ return str(file_path).startswith(str(self.__base_dir))
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+
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+ def resolve_url(self, file_url: Optional[str]) -> Optional[Path]:
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+ """Return path if the given url refers to a file managed by this LocalStore, else None.
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+
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+ Args:
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+ file_url: URL to check
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+
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+ Returns:
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+ If the url is a managed file, return a Path() to the file, None, otherwise
144
+ """
145
+ if file_url is None:
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+ return None
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+ file_path = self.file_url_to_path(file_url)
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+ if file_path is None:
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+ return None
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+ if not str(file_path).startswith(str(self.__base_dir)):
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+ # not a tmp file
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+ return None
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+ return file_path
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+
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+ def move_local_file(self, col: Column, src_path: Path) -> str:
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+ """Move a local file to this store, and return its new URL"""
157
+ dest_path = self._prepare_path(col, ext=src_path.suffix)
158
+ src_path.rename(dest_path)
159
+ new_file_url = urllib.parse.urljoin('file:', urllib.request.pathname2url(str(dest_path)))
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+ _logger.debug(f'Media Storage: moved {src_path} to {new_file_url}')
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+ return new_file_url
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+
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+ def copy_local_file(self, col: Column, src_path: Path) -> str:
164
+ """Copy a local file to a this store, and return its new URL"""
165
+ dest_path = self._prepare_path(col, ext=src_path.suffix)
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+ shutil.copy2(src_path, dest_path)
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+ new_file_url = urllib.parse.urljoin('file:', urllib.request.pathname2url(str(dest_path)))
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+ _logger.debug(f'Media Storage: copied {src_path} to {new_file_url}')
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+ return new_file_url
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+
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+ def save_media_object(self, data: bytes | PIL.Image.Image, col: Column, format: Optional[str]) -> tuple[Path, str]:
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+ """Save a data object to a file in a LocalStore
173
+ Returns:
174
+ dest_path: Path to the saved file
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+ url: URL of the saved file
176
+ """
177
+ assert col.col_type.is_media_type(), f'LocalStore: request to store non media_type Column {col.name}'
178
+ dest_path = self._prepare_path(col)
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+ if isinstance(data, bytes):
180
+ dest_path = self._save_binary_media_file(data, dest_path, format)
181
+ elif isinstance(data, PIL.Image.Image):
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+ dest_path = self._save_pil_image_file(data, dest_path, format)
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+ else:
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+ raise ValueError(f'Unsupported object type: {type(data)}')
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+ new_file_url = urllib.parse.urljoin('file:', urllib.request.pathname2url(str(dest_path)))
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+ return dest_path, new_file_url
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+
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+ def delete(self, tbl_id: UUID, tbl_version: Optional[int] = None) -> Optional[int]:
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+ """Delete all files belonging to tbl_id. If tbl_version is not None, delete
190
+ only those files belonging to the specified tbl_version.
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+
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+ Return:
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+ Number of files deleted or None
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+ """
195
+ assert tbl_id is not None
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+ table_prefix = ObjectPath.table_prefix(tbl_id)
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+ if tbl_version is None:
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+ # Remove the entire folder for this table id.
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+ path = self.__base_dir / table_prefix
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+ if path.exists():
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+ shutil.rmtree(path)
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+ return None
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+ else:
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+ # Remove only the elements for the specified tbl_version.
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+ paths = glob.glob(
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+ str(self.__base_dir / table_prefix) + f'/**/{table_prefix}_*_{tbl_version}_*', recursive=True
207
+ )
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+ for p in paths:
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+ os.remove(p)
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+ return len(paths)
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+
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+ def count(self, tbl_id: Optional[UUID], tbl_version: Optional[int] = None) -> int:
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+ """
214
+ Return number of files for given tbl_id.
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+ """
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+ if tbl_id is None:
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+ paths = glob.glob(str(self.__base_dir / '*'), recursive=True)
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+ elif tbl_version is None:
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+ table_prefix = ObjectPath.table_prefix(tbl_id)
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+ paths = glob.glob(str(self.__base_dir / table_prefix) + f'/**/{table_prefix}_*', recursive=True)
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+ else:
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+ table_prefix = ObjectPath.table_prefix(tbl_id)
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+ paths = glob.glob(
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+ str(self.__base_dir / table_prefix) + f'/**/{table_prefix}_*_{tbl_version}_*', recursive=True
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+ )
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+ # Filter out directories, only count files
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+ return len([p for p in paths if not os.path.isdir(p)])
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+
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+ def stats(self) -> list[tuple[UUID, int, int, int]]:
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+ paths = glob.glob(str(self.__base_dir) + '/**', recursive=True)
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+ # key: (tbl_id, col_id), value: (num_files, size)
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+ d: dict[tuple[UUID, int], list[int]] = defaultdict(lambda: [0, 0])
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+ for p in paths:
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+ if not os.path.isdir(p):
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+ matched = re.match(ObjectPath.PATTERN, Path(p).name)
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+ assert matched is not None
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+ tbl_id, col_id = UUID(hex=matched[1]), int(matched[2])
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+ file_info = os.stat(p)
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+ t = d[tbl_id, col_id]
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+ t[0] += 1
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+ t[1] += file_info.st_size
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+ result = [(tbl_id, col_id, num_files, size) for (tbl_id, col_id), (num_files, size) in d.items()]
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+ result.sort(key=lambda e: e[3], reverse=True)
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+ return result
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+
246
+ def list_objects(self, return_uri: bool, n_max: int = 10) -> list[str]:
247
+ """Return a list of objects found with the specified location
248
+ Each returned object includes the full set of prefixes.
249
+ if return_uri is True, the full GCS URI is returned; otherwise, just the object key.
250
+ """
251
+ r = []
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+ for root, _, files in os.walk(self.__base_dir):
253
+ for file in files:
254
+ r.append(Path(root, file).as_uri() if return_uri else os.path.join(root, file))
255
+ return r
256
+
257
+ def clear(self) -> None:
258
+ """Clear all files from the store."""
259
+ if self.__base_dir.exists():
260
+ shutil.rmtree(self.__base_dir)
261
+ self.__base_dir.mkdir()
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+
263
+
264
+ class TempStore:
265
+ """
266
+ A temporary store for files of data that are not yet persisted to their destination(s).
267
+ A destination is typically either a LocalStore (local persisted files) or a cloud object store.
268
+
269
+ The TempStore class has no internal state. It provides functionality to manage temporary files
270
+ in the env.Env.get().tmp_dir directory.
271
+ It reuses some of the LocalStore functionality to create unique file names and save objects.
272
+ """
273
+
274
+ @classmethod
275
+ def _tmp_dir(cls) -> Path:
276
+ """Returns the path to the temporary directory where files are stored."""
277
+ return env.Env.get().tmp_dir
278
+
279
+ @classmethod
280
+ def count(cls, tbl_id: Optional[UUID] = None, tbl_version: Optional[int] = None) -> int:
281
+ return LocalStore(cls._tmp_dir()).count(tbl_id, tbl_version)
282
+
283
+ @classmethod
284
+ def contains_path(cls, file_path: Path) -> bool:
285
+ return LocalStore(cls._tmp_dir()).contains_path(file_path)
286
+
287
+ @classmethod
288
+ def resolve_url(cls, file_url: Optional[str]) -> Optional[Path]:
289
+ return LocalStore(cls._tmp_dir()).resolve_url(file_url)
290
+
291
+ @classmethod
292
+ def save_media_object(cls, data: bytes | PIL.Image.Image, col: Column, format: Optional[str]) -> tuple[Path, str]:
293
+ return LocalStore(cls._tmp_dir()).save_media_object(data, col, format)
294
+
295
+ @classmethod
296
+ def delete_media_file(cls, file_path: Path) -> None:
297
+ """Delete an object from the temporary store."""
298
+ assert file_path is not None, 'Object path must be provided'
299
+ assert file_path.exists(), f'Object path does not exist: {file_path}'
300
+ assert cls.contains_path(file_path), f'Object path must be in the TempStore: {file_path}'
301
+ file_path.unlink()
302
+ _logger.debug(f'Media Storage: deleted {file_path}')
303
+
304
+ @classmethod
305
+ def create_path(cls, tbl_id: Optional[UUID] = None, extension: str = '') -> Path:
306
+ """Return a new, unique Path located in the temporary store.
307
+ If tbl_id is provided, the path name will be similar to a LocalStore path based on the tbl_id.
308
+ If tbl_id is None, a random UUID will be used to create the path."""
309
+ if tbl_id is not None:
310
+ return LocalStore(cls._tmp_dir())._prepare_path_raw(tbl_id, 0, 0, extension)
311
+ return cls._tmp_dir() / f'{uuid.uuid4()}{extension}'
312
+
313
+ @classmethod
314
+ def clear(cls) -> None:
315
+ """Clear all files from the temporary store."""
316
+ LocalStore(cls._tmp_dir()).clear()