pipen-cli-gbatch 0.0.6__py3-none-any.whl → 0.0.7__py3-none-any.whl

pipen_cli_gbatch/__init__.py

@@ -79,7 +79,7 @@ from pipen.cli import CLIPlugin
 from pipen.scheduler import GbatchScheduler
 from pipen_poplog import LogsPopulator
 
-__version__ = "0.0.6"
+__version__ = "0.0.7"
 __all__ = ("CliGbatchPlugin", "CliGbatchDaemon")
 MOUNTED_CWD = "/mnt/disks/.cwd"
 
@@ -247,8 +247,16 @@ class CliGbatchDaemon:
         command_outdir = self._get_arg_from_command("outdir")
 
         if command_outdir:
-            self._add_mount(command_outdir, GbatchScheduler.MOUNTED_OUTDIR)
-            self._replace_arg_in_command("outdir", GbatchScheduler.MOUNTED_OUTDIR)
+            coudir = AnyPath(command_outdir)
+            if (
+                not isinstance(coudir, GSPath)
+                and not coudir.is_absolute()
+                and self.mount_as_cwd
+            ):
+                self._replace_arg_in_command("outdir", f"{MOUNTED_CWD}/{coudir}")
+            else:
+                self._add_mount(command_outdir, GbatchScheduler.MOUNTED_OUTDIR)
+                self._replace_arg_in_command("outdir", GbatchScheduler.MOUNTED_OUTDIR)
         elif self.mount_as_cwd:
             command_name = self._get_arg_from_command("name") or self.config.name
             self._replace_arg_in_command(
@@ -516,6 +524,12 @@ class CliGbatchDaemon:
             self._handle_outdir()
             self._infer_jobname_prefix()
         else:
+            if "name" not in self.config or not self.config.name:
+                self.config["name"] = "PipenCliGbatchDaemon"
+
+            if not self.config.workdir and self.mount_as_cwd:
+                self.config.workdir = f"{self.mount_as_cwd}/.pipen"
+
             if not self.config.workdir or not isinstance(
                 AnyPath(self.config.workdir),
                 GSPath,
@@ -526,8 +540,6 @@ class CliGbatchDaemon:
                 )
                 sys.exit(1)
 
-            if "name" not in self.config or not self.config.name:
-                self.config["name"] = "PipenCliGbatchDaemon"
 
     async def run(self):  # pragma: no cover
         """Execute the daemon pipeline based on configuration.

{pipen_cli_gbatch-0.0.6.dist-info → pipen_cli_gbatch-0.0.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pipen-cli-gbatch
-Version: 0.0.6
+Version: 0.0.7
 Summary: A pipen cli plugin to run command via Google Cloud Batch
 License: MIT
 Author: pwwang

pipen_cli_gbatch-0.0.7.dist-info/RECORD

@@ -0,0 +1,6 @@
+pipen_cli_gbatch/__init__.py,sha256=xiYBNz3z3Eu8vmFECPFpOt1EE501T_gZx_iPUDajCd4,31309
+pipen_cli_gbatch/daemon_args.toml,sha256=XrCDwTaJ7xPgGLtZev4qikjrZWqixdE8tqSsFnIvmjc,7381
+pipen_cli_gbatch-0.0.7.dist-info/METADATA,sha256=pxmFaIpwMG6GU4wZF_1EBqtWa9l44KI-m1Lhi3TI1Dw,11301
+pipen_cli_gbatch-0.0.7.dist-info/WHEEL,sha256=zp0Cn7JsFoX2ATtOhtaFYIiE2rmFAD4OcMhtUki8W3U,88
+pipen_cli_gbatch-0.0.7.dist-info/entry_points.txt,sha256=Z9NLeCpRo-rb8wss5mB5TBcG-_RbdlPA49b8Ma5pvQA,57
+pipen_cli_gbatch-0.0.7.dist-info/RECORD,,

pipen_cli_gbatch-0.0.6.dist-info/RECORD

@@ -1,6 +0,0 @@
-pipen_cli_gbatch/__init__.py,sha256=5ChKkEGzq1S2irrwHpNts2oqezfB1zKs5IA2i3YJd-c,30862
-pipen_cli_gbatch/daemon_args.toml,sha256=XrCDwTaJ7xPgGLtZev4qikjrZWqixdE8tqSsFnIvmjc,7381
-pipen_cli_gbatch-0.0.6.dist-info/METADATA,sha256=ZvlRbQNOG6k2EIe2UeE4f469VP8AZM_IcLDlkuw91wg,11301
-pipen_cli_gbatch-0.0.6.dist-info/WHEEL,sha256=zp0Cn7JsFoX2ATtOhtaFYIiE2rmFAD4OcMhtUki8W3U,88
-pipen_cli_gbatch-0.0.6.dist-info/entry_points.txt,sha256=Z9NLeCpRo-rb8wss5mB5TBcG-_RbdlPA49b8Ma5pvQA,57
-pipen_cli_gbatch-0.0.6.dist-info/RECORD,,