pigeon-tem-comms 1.1.0__py3-none-any.whl → 1.1.2__py3-none-any.whl

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Files changed (13) hide show
  1. TEM_comms/__init__.py +1 -2
  2. TEM_comms/camera.py +1 -0
  3. TEM_comms/montage.py +9 -11
  4. TEM_comms/scope.py +2 -0
  5. TEM_comms/stage/motion.py +3 -2
  6. TEM_comms/tile/statistics.py +1 -0
  7. {pigeon_tem_comms-1.1.0.dist-info → pigeon_tem_comms-1.1.2.dist-info}/METADATA +1 -1
  8. pigeon_tem_comms-1.1.2.dist-info/RECORD +21 -0
  9. {pigeon_tem_comms-1.1.0.dist-info → pigeon_tem_comms-1.1.2.dist-info}/WHEEL +1 -1
  10. pigeon_tem_comms-1.1.0.dist-info/RECORD +0 -21
  11. {pigeon_tem_comms-1.1.0.dist-info → pigeon_tem_comms-1.1.2.dist-info}/entry_points.txt +0 -0
  12. {pigeon_tem_comms-1.1.0.dist-info → pigeon_tem_comms-1.1.2.dist-info}/licenses/LICENSE +0 -0
  13. {pigeon_tem_comms-1.1.0.dist-info → pigeon_tem_comms-1.1.2.dist-info}/top_level.txt +0 -0
TEM_comms/__init__.py CHANGED
@@ -26,8 +26,7 @@ topics = {
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  "ui.edit": ui.Edit,
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  "ui.run": ui.Run,
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  "ui.setup": ui.Setup,
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- "montage.start": montage.Start,
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- "montage.finished": montage.Finished,
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+ "montage.complete": montage.Complete,
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  "qc.status": qc.Status,
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  "roi.load": roi.LoadROI,
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  "roi.create": roi.CreateROI,
TEM_comms/camera.py CHANGED
@@ -31,3 +31,4 @@ class Status(BaseMessage):
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  device_name: str
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  device_model_id: int
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  device_sn: str
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+ bit_depth: int
TEM_comms/montage.py CHANGED
@@ -1,18 +1,16 @@
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  from pigeon import BaseMessage
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- from typing import Mapping, List, Any, Optional
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+ from typing import Mapping, List, Any, Optional, Tuple
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+ from datetime import datetime
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- class Start(BaseMessage):
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+ class Complete(BaseMessage):
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  montage_id: str
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- num_tiles: int
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-
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-
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- class Finished(BaseMessage):
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- montage_id: str
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- num_tiles: int
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- roi: str
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- specimen: str
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- metadata: Mapping[str, Any] | List[Any]
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+ tile_ids: List[str]
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+ acquisition_id: str
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+ start_time: datetime
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+ pixel_size: float
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+ rotation_angle: float
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+ aperture_centroid: Tuple[int, int]
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  class Minimap(BaseMessage):
TEM_comms/scope.py CHANGED
@@ -9,6 +9,7 @@ class Command(BaseMessage):
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  mag: Optional[int] = None
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  brightness: Optional[int] = None
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  beam_offset: Optional[Tuple[int, int]] = None
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+ spot_size: Optional[int] = None
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  screen: Optional[Literal["up", "down"]] = None
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  @model_validator(mode="after")
@@ -25,4 +26,5 @@ class Status(BaseMessage):
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  tank_voltage: int
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  brightness: int
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  beam_offset: Tuple[int, int]
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+ spot_size: int
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  screen: Literal["up", "down"] | None
TEM_comms/stage/motion.py CHANGED
@@ -1,16 +1,17 @@
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+ from typing import Optional
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  from pigeon import BaseMessage
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  class Command(BaseMessage):
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  x: int | None = None
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  y: int | None = None
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- z: int | None = None
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+ z: Optional[int] = None
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  calibrate: bool = False
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  class Status(BaseMessage):
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  x: int | None
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  y: int | None
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- z: int | None
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+ z: Optional[int] = None
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  in_motion: bool
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  error: str = ""
TEM_comms/tile/statistics.py CHANGED
@@ -14,3 +14,4 @@ class MinMaxMean(TileMetadata):
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  min: int
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  max: int
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  mean: int
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+ std: int
{pigeon_tem_comms-1.1.0.dist-info → pigeon_tem_comms-1.1.2.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: pigeon-tem-comms
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- Version: 1.1.0
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+ Version: 1.1.2
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  Summary: Pigeon messages for the next generation TEM imaging system.
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  Author-email: Cameron Devine <cameron.devine@alleninstitute.org>
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  License: BSD 3 Clause
pigeon_tem_comms-1.1.2.dist-info/RECORD ADDED
@@ -0,0 +1,21 @@
1
+ TEM_comms/__init__.py,sha256=lP9VixOSpFW0h0kPq-z-pUOpD53RBat6_G3ZrFyUuqI,1264
2
+ TEM_comms/buffer.py,sha256=Jr6fUIbUPreQSSGKWR7jkA1McyZZv3lVE8uQSER8VL4,123
3
+ TEM_comms/camera.py,sha256=xzym-PLP3SWHWVqNaDSDo4uYG8TvshBAugW7FdJEWEc,692
4
+ TEM_comms/montage.py,sha256=NmY8RGvArMwK-Qgmrc_IPzgOc3_m51YuNIUzntd62vc,541
5
+ TEM_comms/qc.py,sha256=sujy2i0wimMvrHDPEXKdaiO7xxvRcHiy83mVpATLyqA,141
6
+ TEM_comms/roi.py,sha256=37fKMT-KNJfWOwWvFAPTFHuBzkV1h6RS42kQsU00teQ,1145
7
+ TEM_comms/scope.py,sha256=EfsOaEWfzT_UhYLRAYE733RoRyQQmNQc1Kz90gYLiqs,816
8
+ TEM_comms/ui.py,sha256=Yxd0i4wjmddDl9sVzcFHHu5b6n0ICzaO0b_8SmAysxg,1459
9
+ TEM_comms/stage/__init__.py,sha256=UVtYKzMBI01FUADS24xSItNIjhqdZtlDeJdqsDJNVIc,67
10
+ TEM_comms/stage/aperture.py,sha256=lyJO34_K76MKrZ-o2izd5V7eEN55d3lGu__RvZq-NlA,227
11
+ TEM_comms/stage/motion.py,sha256=0QnMOgVB8THQEims4Nc5ZxonqIH-XRjrw9F7p30Ex9k,328
12
+ TEM_comms/stage/rotation.py,sha256=tUcf6IpQ2ooRDYb51Zb4pi7pQUrBuLPiLKSg8Ebb2DY,332
13
+ TEM_comms/tile/__init__.py,sha256=ID3b4VAHqVXAkxTYOZ7H2oTSrnVdUYt4Xb6gpQ0I3qo,316
14
+ TEM_comms/tile/metadata.py,sha256=pUxmi_C02e5nwTm51rIULkKaRz6ij5mlXylzAcDU-9c,149
15
+ TEM_comms/tile/statistics.py,sha256=C1pMEOjwVrhjGR6R7efKJE-pR_tw9ZAGrprLIHcXc_A,245
16
+ pigeon_tem_comms-1.1.2.dist-info/licenses/LICENSE,sha256=tZfQIUX7uNGacTb751ZWInVenJl6OwYQihcGbYrKSts,1463
17
+ pigeon_tem_comms-1.1.2.dist-info/METADATA,sha256=lUbcoZ-2bosXJ0h3WC-Rcrvhd8b3LYbx39IOzuRugdU,1575
18
+ pigeon_tem_comms-1.1.2.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
19
+ pigeon_tem_comms-1.1.2.dist-info/entry_points.txt,sha256=X2WfBCDgfH9XVVqiI4rLu7BLyMNuLW6WWckqXxfbrgk,38
20
+ pigeon_tem_comms-1.1.2.dist-info/top_level.txt,sha256=3_1RcQ7xvS2dJEYnPIigo9snoKcSXSNJzPqunY0qydI,10
21
+ pigeon_tem_comms-1.1.2.dist-info/RECORD,,
{pigeon_tem_comms-1.1.0.dist-info → pigeon_tem_comms-1.1.2.dist-info}/WHEEL RENAMED
@@ -1,5 +1,5 @@
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  Wheel-Version: 1.0
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- Generator: setuptools (77.0.3)
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+ Generator: setuptools (78.1.0)
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  Root-Is-Purelib: true
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  Tag: py3-none-any
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5
 
pigeon_tem_comms-1.1.0.dist-info/RECORD DELETED
@@ -1,21 +0,0 @@
1
- TEM_comms/__init__.py,sha256=ujCgc64ihXYl3uvwxW6zfQGIAxiMBoV-betCiMMBuCQ,1300
2
- TEM_comms/buffer.py,sha256=Jr6fUIbUPreQSSGKWR7jkA1McyZZv3lVE8uQSER8VL4,123
3
- TEM_comms/camera.py,sha256=cqaMJBKMYZ6GI6EMk2_T7rXA9-nLAp2lon0nRnPeHRk,673
4
- TEM_comms/montage.py,sha256=H4bpqSfJLroR3WBoSY2KdPrE8A2WXrDgzp0wAA0M0oE,505
5
- TEM_comms/qc.py,sha256=sujy2i0wimMvrHDPEXKdaiO7xxvRcHiy83mVpATLyqA,141
6
- TEM_comms/roi.py,sha256=37fKMT-KNJfWOwWvFAPTFHuBzkV1h6RS42kQsU00teQ,1145
7
- TEM_comms/scope.py,sha256=lPEKzWT2raR6ailiAitvWXH-Xu6fxWwYBf3GPfVIizc,761
8
- TEM_comms/ui.py,sha256=Yxd0i4wjmddDl9sVzcFHHu5b6n0ICzaO0b_8SmAysxg,1459
9
- TEM_comms/stage/__init__.py,sha256=UVtYKzMBI01FUADS24xSItNIjhqdZtlDeJdqsDJNVIc,67
10
- TEM_comms/stage/aperture.py,sha256=lyJO34_K76MKrZ-o2izd5V7eEN55d3lGu__RvZq-NlA,227
11
- TEM_comms/stage/motion.py,sha256=CqP-BS7mRP5Z9VkFT9-ePiICg6HQiviUubaO1qSioxo,287
12
- TEM_comms/stage/rotation.py,sha256=tUcf6IpQ2ooRDYb51Zb4pi7pQUrBuLPiLKSg8Ebb2DY,332
13
- TEM_comms/tile/__init__.py,sha256=ID3b4VAHqVXAkxTYOZ7H2oTSrnVdUYt4Xb6gpQ0I3qo,316
14
- TEM_comms/tile/metadata.py,sha256=pUxmi_C02e5nwTm51rIULkKaRz6ij5mlXylzAcDU-9c,149
15
- TEM_comms/tile/statistics.py,sha256=ij0ggk15J_jikIkuSDmhvY96yjliofFRN5SNdsGA0lA,232
16
- pigeon_tem_comms-1.1.0.dist-info/licenses/LICENSE,sha256=tZfQIUX7uNGacTb751ZWInVenJl6OwYQihcGbYrKSts,1463
17
- pigeon_tem_comms-1.1.0.dist-info/METADATA,sha256=5cQ5-0s4L3PcSpbbam7D3m1ks-6lFFoL37G_V8ZlgWU,1575
18
- pigeon_tem_comms-1.1.0.dist-info/WHEEL,sha256=1tXe9gY0PYatrMPMDd6jXqjfpz_B-Wqm32CPfRC58XU,91
19
- pigeon_tem_comms-1.1.0.dist-info/entry_points.txt,sha256=X2WfBCDgfH9XVVqiI4rLu7BLyMNuLW6WWckqXxfbrgk,38
20
- pigeon_tem_comms-1.1.0.dist-info/top_level.txt,sha256=3_1RcQ7xvS2dJEYnPIigo9snoKcSXSNJzPqunY0qydI,10
21
- pigeon_tem_comms-1.1.0.dist-info/RECORD,,