pigeon-tem-comms 0.1.1__py3-none-any.whl → 0.3.0__py3-none-any.whl

TEM_comms/__init__.py

@@ -3,6 +3,7 @@ from . import camera
 from . import scope
 from . import stage
 from . import tile
+from . import ui
 
 import importlib.metadata
 
@@ -31,7 +32,10 @@ topics = {
     "tile.statistics.histogram": tile.statistics.Histogram,
     "tile.statistics.min_max_mean": tile.statistics.MinMaxMean,
     "tile.transform": tile.Transform,
+    "ui.edit": ui.Edit,
+    "ui.run": ui.Run,
+    "ui.setup": ui.Setup,
 }
 
 
-msgs = (topics, __version__)
+msgs = (topics, __version__)

TEM_comms/camera.py

@@ -1,23 +1,30 @@
 from pigeon import BaseMessage
+from typing import Optional
+
 
 class Command(BaseMessage):
     tile_id: str
 
+
 class Image(BaseMessage):
     tile_id: str
     path: str
 
+
 class Settings(BaseMessage):
     exposure: float | None = None
+    gain: Optional[float] = None
     width: int | None = None
     height: int | None = None
 
+
 class Status(BaseMessage):
     exposure: float
+    gain: float
     width: int
     height: int
     temp: float
     target_temp: float
     device_name: str
     device_model_id: int
-    device_sn: str
+    device_sn: str

TEM_comms/scope.py

@@ -2,6 +2,7 @@ from pigeon import BaseMessage
 from typing import Literal
 from pydantic import model_validator
 
+
 class Command(BaseMessage):
     focus: int | None = None
     mag_mode: Literal["LM", "MAG1", "MAG2"] | None = None
@@ -18,4 +19,4 @@ class Status(BaseMessage):
     aperture: str | None
     mag_mode: str
     mag: int
-    tank_voltage: int
+    tank_voltage: int

TEM_comms/stage/__init__.py

@@ -1,3 +1,3 @@
 from . import aperture
 from . import motion
-from . import rotation
+from . import rotation

TEM_comms/stage/aperture.py

@@ -1,10 +1,12 @@
 from pigeon import BaseMessage
 
+
 class Command(BaseMessage):
     aperture_id: int | None = None
     calibrate: bool = False
 
+
 class Status(BaseMessage):
     current_aperture: int
     calibrated: bool
-    error: str = ""
+    error: str = ""

TEM_comms/stage/motion.py

@@ -1,12 +1,14 @@
 from pigeon import BaseMessage
 
+
 class Command(BaseMessage):
     x: int | None = None
     y: int | None = None
     calibrate: bool = False
 
+
 class Status(BaseMessage):
     x: int
     y: int
     in_motion: bool
-    error: str = ""
+    error: str = ""

TEM_comms/stage/rotation.py

@@ -1,12 +1,14 @@
 from pigeon import BaseMessage
 
+
 class Command(BaseMessage):
     angle_x: float | None = None
     angle_y: float | None = None
     calibrate: bool = False
 
+
 class Status(BaseMessage):
     angle_x: float
     angle_y: float
     in_motion: bool
-    error: str = ""
+    error: str = ""

TEM_comms/tile/statistics.py

@@ -1,15 +1,18 @@
 from pigeon import BaseMessage
 
+
 class Focus(BaseMessage):
     tile_id: str
     focus: float
 
+
 class Histogram(BaseMessage):
     tile_id: str
     path: str
 
+
 class MinMaxMean(BaseMessage):
     tile_id: str
     min: int
     max: int
-    mean: int
+    mean: int

TEM_comms/ui.py

@@ -0,0 +1,42 @@
+from pigeon import BaseMessage
+from typing import Optional
+from pydantic import model_validator
+
+
+class Edit(BaseMessage):
+    roi_id: str
+    roi_pos_x: int
+    roi_pox_y: int
+    roi_width: int
+    roi_height: int
+    roi_angle: float
+
+
+class Run(BaseMessage):
+    session_id: Optional[str] = None
+    grid_first: Optional[int] = None
+    grid_last: Optional[int] = None
+    montage: bool = False
+    abort_now: bool = False
+    abort_at_end: bool = False
+    resume: bool = False
+
+    @model_validator(mode="after")
+    def check_grid(self):
+        assert self.montage != (self.grid_first is None)
+        assert self.montage != (self.grid_last is None)
+        return self
+
+    @model_validator(mode="after")
+    def check_session(self):
+        assert self.montage != (self.session_id is None)
+        return self
+
+
+class Setup(BaseMessage):
+    conch_owner: Optional[str] = None
+    auto_focus: bool = False
+    auto_exposure: bool = False
+    lens_correction: bool = False
+    acquire_brightfield: bool = False
+    acquire_darkfield: bool = False

{pigeon_tem_comms-0.1.1.dist-info → pigeon_tem_comms-0.3.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pigeon-tem-comms
-Version: 0.1.1
+Version: 0.3.0
 Summary: Pigeon messages for the next generation TEM imaging system.
 Author-email: Cameron Devine <cameron.devine@alleninstitute.org>
 License: BSD 3 Clause

pigeon_tem_comms-0.3.0.dist-info/RECORD

@@ -0,0 +1,17 @@
+TEM_comms/__init__.py,sha256=0FngFKym-Yl33wkqr68k6YglJCbVs1fV63uHFTmzJwk,1229
+TEM_comms/buffer.py,sha256=Jr6fUIbUPreQSSGKWR7jkA1McyZZv3lVE8uQSER8VL4,123
+TEM_comms/camera.py,sha256=L9ebaZra-M3g571PUzQCAuC92Auw4ox3gRceJ2uKRhs,522
+TEM_comms/scope.py,sha256=CxpmTTBm6YMevPr3LeK9A7e8v5lGU6taG4e647asvak,503
+TEM_comms/ui.py,sha256=8a3GxCjw7E52WcAgDZLlQ7S4L92w5GuhJK2V_tEdSSA,1055
+TEM_comms/stage/__init__.py,sha256=UVtYKzMBI01FUADS24xSItNIjhqdZtlDeJdqsDJNVIc,67
+TEM_comms/stage/aperture.py,sha256=LEIlUUbkUMAI-OYQnO4tqJTblCNPitwjcxSzZLFaliM,220
+TEM_comms/stage/motion.py,sha256=hhTXTX-ED8o76oDtjluGJOzLcWfDmG0LEAt44Pfk4gI,230
+TEM_comms/stage/rotation.py,sha256=J7tAIP2nskjInhZmdIbqwrvxTFXihEynVOAyxbDDfjU,262
+TEM_comms/tile/__init__.py,sha256=kK9thh69UavYZ3toRzc_BLwjR3_Yif1tTdRAGLncrzY,458
+TEM_comms/tile/statistics.py,sha256=8l1a8Qq0F2Jt1VV5ecoG5HSfZRa7njds1wo64n8CS3g,246
+pigeon_tem_comms-0.3.0.dist-info/LICENSE,sha256=tZfQIUX7uNGacTb751ZWInVenJl6OwYQihcGbYrKSts,1463
+pigeon_tem_comms-0.3.0.dist-info/METADATA,sha256=RuJGaL1qYm_x9TGFukRuSkuahXgwvgi2nwfi946f8ag,1553
+pigeon_tem_comms-0.3.0.dist-info/WHEEL,sha256=y4mX-SOX4fYIkonsAGA5N0Oy-8_gI4FXw5HNI1xqvWg,91
+pigeon_tem_comms-0.3.0.dist-info/entry_points.txt,sha256=KFi0hPNwGY3gEmJF_8_smglVpfbU24lcCy0t_TJPgtg,36
+pigeon_tem_comms-0.3.0.dist-info/top_level.txt,sha256=3_1RcQ7xvS2dJEYnPIigo9snoKcSXSNJzPqunY0qydI,10
+pigeon_tem_comms-0.3.0.dist-info/RECORD,,

{pigeon_tem_comms-0.1.1.dist-info → pigeon_tem_comms-0.3.0.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.43.0)
+Generator: setuptools (70.2.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

pigeon_tem_comms-0.1.1.dist-info/RECORD

@@ -1,16 +0,0 @@
-TEM_comms/__init__.py,sha256=Ermd4vQJ4DYQeknsWSfbh4Bxa7fJGlRDCqL28cIoXRs,1139
-TEM_comms/buffer.py,sha256=Jr6fUIbUPreQSSGKWR7jkA1McyZZv3lVE8uQSER8VL4,123
-TEM_comms/camera.py,sha256=uBp9N00k4x_eYC_W8zUrTjFrmCpb6Tu2GQOG0WIGKwc,440
-TEM_comms/scope.py,sha256=cj8S0BqR7RozFNh2TsiT-DnuRKCIdMKol5PdIxG65JU,501
-TEM_comms/stage/__init__.py,sha256=xeB18s-MGkc83BsfWkUc0W3YwxoHVK-QfLAPfRelcFQ,66
-TEM_comms/stage/aperture.py,sha256=hnd9HB6jYywHRQ1fB7suKEUvXZDT2VkE5cFJ3zKctPg,217
-TEM_comms/stage/motion.py,sha256=NQPufhxRKB3ySEyPksDFi6srBlBGKxaqF5k2YAAfa9s,227
-TEM_comms/stage/rotation.py,sha256=3khQqRCBDXNDQ5uArzhQ4kL0JP58wVMEbW3rG8hrZ_s,259
-TEM_comms/tile/__init__.py,sha256=kK9thh69UavYZ3toRzc_BLwjR3_Yif1tTdRAGLncrzY,458
-TEM_comms/tile/statistics.py,sha256=sQHeXtO3UB9k6lKtDEeO3e142aaAKelp-A8A_Bf5XJ8,242
-pigeon_tem_comms-0.1.1.dist-info/LICENSE,sha256=tZfQIUX7uNGacTb751ZWInVenJl6OwYQihcGbYrKSts,1463
-pigeon_tem_comms-0.1.1.dist-info/METADATA,sha256=oEfpKGp64ngQAs_cITXtf9Pw9xc8ZsVQtXb7ETmQWh0,1553
-pigeon_tem_comms-0.1.1.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
-pigeon_tem_comms-0.1.1.dist-info/entry_points.txt,sha256=KFi0hPNwGY3gEmJF_8_smglVpfbU24lcCy0t_TJPgtg,36
-pigeon_tem_comms-0.1.1.dist-info/top_level.txt,sha256=3_1RcQ7xvS2dJEYnPIigo9snoKcSXSNJzPqunY0qydI,10
-pigeon_tem_comms-0.1.1.dist-info/RECORD,,