pico-ml 2.0.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (52) hide show
  1. pico/__init__.py +3 -0
  2. pico/__main__.py +3 -0
  3. pico/cli/__init__.py +2 -0
  4. pico/cli/main.py +117 -0
  5. pico/conf/SupportedCV.py +17 -0
  6. pico/conf/SupportedModels.py +73 -0
  7. pico/conf/algo_sklearn.json +51 -0
  8. pico/conf/parameters.py +14 -0
  9. pico/domain/ClassificationDesign.py +107 -0
  10. pico/domain/Controller.py +397 -0
  11. pico/domain/DataMatrix.py +147 -0
  12. pico/domain/ExperimentDTO.py +17 -0
  13. pico/domain/MetaData.py +229 -0
  14. pico/domain/MetaboExperiment.py +696 -0
  15. pico/domain/MetaboModel.py +53 -0
  16. pico/domain/ModelFactory.py +45 -0
  17. pico/domain/Results.py +602 -0
  18. pico/domain/SplitGroup.py +202 -0
  19. pico/domain/__init__.py +9 -0
  20. pico/domain/dumps/metadata/.gitkeep +0 -0
  21. pico/domain/dumps/splits/.gitkeep +0 -0
  22. pico/service/DataFormat.py +180 -0
  23. pico/service/ExperimentDesign.py +30 -0
  24. pico/service/LoggerConfig.py +150 -0
  25. pico/service/Plots.py +472 -0
  26. pico/service/RunMLalgo.py +93 -0
  27. pico/service/SamplesPairing.py +390 -0
  28. pico/service/Utils.py +497 -0
  29. pico/service/__init__.py +7 -0
  30. pico/ui/__init__.py +1 -0
  31. pico/ui/app.py +145 -0
  32. pico/ui/assets/000_Stylesheet.css +464 -0
  33. pico/ui/assets/DecisionTree.png +0 -0
  34. pico/ui/assets/Figure_home_wider.png +0 -0
  35. pico/ui/assets/favicon.ico +0 -0
  36. pico/ui/assets/help_icon.png +0 -0
  37. pico/ui/assets/help_icon.svg +15 -0
  38. pico/ui/assets/update_figure_steps_MeDIC_4.svg +1 -0
  39. pico/ui/tabs/AggregatedResultsTab.py +394 -0
  40. pico/ui/tabs/InfoTab.py +440 -0
  41. pico/ui/tabs/InterpretTab.py +21 -0
  42. pico/ui/tabs/MLTab.py +487 -0
  43. pico/ui/tabs/MetaTab.py +23 -0
  44. pico/ui/tabs/ResultsTab.py +1062 -0
  45. pico/ui/tabs/SplitsTab.py +1227 -0
  46. pico/ui/tabs/__init__.py +6 -0
  47. pico/ui/tabs/utils.py +101 -0
  48. pico_ml-2.0.0.dist-info/METADATA +86 -0
  49. pico_ml-2.0.0.dist-info/RECORD +52 -0
  50. pico_ml-2.0.0.dist-info/WHEEL +4 -0
  51. pico_ml-2.0.0.dist-info/entry_points.txt +2 -0
  52. pico_ml-2.0.0.dist-info/licenses/LICENSE +437 -0
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+ /********************
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+ * General *
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+ ********************/
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+
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+ body{
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+ /*background-color: #f9f9fa;*/
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+ }
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+
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+ H6{
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+ margin:5px;
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+ }
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+
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+ H4{
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+ margin-bottom:1em;
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+ }
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+
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+ .popover{
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+ transition-duration:0s;
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+ font-size:1em;
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+ border: 1px solid #13BD00;
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+ }
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+ .bs-popover-right > .arrow::before, .bs-popover-auto[x-placement^="right"] > .arrow::before{
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+ border-right-color:#13BD00;
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+ }
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+
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+ .title_and_help{
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+ display:flex;
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+ flex-direction:row;
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+ }
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+
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+ .column_content{
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+ min-width:50%;
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+ }
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+
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+ .etoile{
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+ color: red;
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+ }
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+
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+ #loading-output-1{
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+ margin-top:2em;
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+ }
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+
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+
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+ /*******************
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+ * Forms *
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+ *******************/
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+ .title_and_form{
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+ display:flex;
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+ flex-direction:column;
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+ width:40%;
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+ margin-top:1em;
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+ margin-left:5%;
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+ margin-right:5%;
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+ }
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+
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+ .title_and_form_mini{
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+ display:flex;
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+ flex-direction:column;
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+ width:50%;
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+ /*margin-left:5%;*/
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+ /*margin-right:5%;*/
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+ }
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+
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+ .form_labels{
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+ text-transform : uppercase;
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+ }
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+
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+ .radio_on_line{
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+ display:inline-block;
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+ }
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+
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+ .form_field{
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+ margin-bottom:2em;
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+ }
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+
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+ .form_input_text{
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+ font-size:1em;
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+ }
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+
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+ .form_select{
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+ font-size:1em;
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+ width:15%;
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+ }
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+
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+ .form_select_large{
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+ font-size:1em;
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+ width:100%;
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+ margin-top:1em;
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+ margin-bottom:1em;
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+ }
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+
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+
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+
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+ /*************
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+ * Tables *
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+ *************/
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+ th{
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+ font-size: 1em;
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+ }
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+
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+ .table_features{
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+ width:40%;
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+ }
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+
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+ #overview_table th{
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+ font-size:1em;
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+ padding-left:1em;
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+ text-align:center;
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+ }
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+
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+ #table_exp_info {
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+ margin-left: 0.5em;
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+ }
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+
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+ #table_exp_info tr{
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+ line-height: 0.25;
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+ }
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+
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+ #table_exp_info td{
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+ border-bottom: none;
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+ }
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+
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+
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+
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+ /****************
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+ * Cards *
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+ ****************/
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+ .cards_info{
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+ /*margin-top:1em;*/
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+ margin-bottom:2em;
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+ }
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+
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+ .card_body_fig{
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+ margin-left:2em;
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+ padding: 1em;
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+ }
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+
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+
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+
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+ /****************
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+ * Buttons *
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+ ****************/
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+ .button_box{
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+ width:100%;
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+ display:flex;
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+ justify-content:right;
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+ }
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+
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+ .btn{
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+ margin:1.5em;
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+ font-size:1em;
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+ }
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+
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+ .popover_btn{
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+ margin:0 1.5em 0 1.5em;
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+ visibility: hidden;
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+ }
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+
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+ .custom_buttons{
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+ margin:1.5em;
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+ font-size:1em;
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+ background-color:#00143e;
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+ }
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+
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+ #split_dataset_button{
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+ width:25%;
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+ }
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+
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+ #load_ML_results_button{
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+ width:15%;
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+ }
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+
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+ #compute_global_metrics{
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+ width:50%;
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+ margin-left:0.5em;
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+ }
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+
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+ #help_accPlot, #help_umapPlot, #help_pcaPlot, #help_BxPlot, #help_heatmapPlot{
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+ font-size:1em;
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+ }
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+
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+ #btn_add_design_exp{
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+ width:20%;
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+ }
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+
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+ .push {
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+ margin-left: auto;
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+ }
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+
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+ #Learning_button_box{
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+ display: flex;
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+ flex-direction: row;
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+ justify-content: flex-end;
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+ }
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+
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+ #learn_loading_output{
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+ margin-right:4.5em;
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+ }
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+
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+
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+ /*************
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+ * Toast *
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+ *************/
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+
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+ #toast_success_files_list_created{
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+ position:fixed;
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+ bottom:10px;
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+ right:10px;
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+ width:350px;
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+ font-size:1em;
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+ border: 1px solid rgba(19,189,0,1);
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+ }
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+
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+ /*******************
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+ * Section specific *
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+ *******************/
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+ /* Progress bars */
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+ #progress{
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+ height:2em;
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+ }
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+
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+ /* Title of the dashboard*/
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+ #title_container{
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+ display:flex;
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+ height:5em;
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+ margin:auto auto 0 auto;
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+ }
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+
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+ #title_bg{
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+ display: flex;
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+ flex-direction: row;
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+ justify-content:center;
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+ background-color:#00143e;
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+ min-width:35em;
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+ max-width: 40%;
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+ padding:1em;
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+ margin:0.5em;
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+ }
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+
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+ #title{
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+ color:white;
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+ display:flex;
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+ justify-content:center;
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+ align-item:center;
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+ margin:auto 1em 0 1em;
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+ }
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+
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+ #acronym{
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+ display: flex;
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+ flex-direction: column;
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+ }
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+
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+
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+ /* Tabs & Tab */
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+ #custom_big_tabs{
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+ width:96%;
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+ margin:auto auto 2em auto;
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+ }
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+
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+ .nav-tabs .nav-link{
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+ background-color: rgba(255,255,255,1);
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+ border-color: #fff #fff #eceeef #fff;
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+ }
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+
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+ .nav-tabs .nav-link.active, .nav-tabs .nav-item.show .nav-link{
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+ /*color: rgba(0,162,254,1);*/ /*#00A2FE*/
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+ color: rgba(19,189,0,1); /*#13BD00*/
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+ }
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+
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+ .global_tab{
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+ display:flex;
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+ width:96%;
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+ }
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+
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+ .tab-parent{
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+ width:100%;
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+ margin:auto;
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+ display:flex;
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+ }
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+
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+ .tab-container{
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+ min-width:11%;
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+ /*max-width:15%;*/
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+ }
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+
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+ .tab-content{
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+ max-width:100%;
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+ display:flex;
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+ justify-content:center;
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+ flex-direction:row;
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+ flex-wrap:wrap;
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+ /*margin: 2em 2em 2em 2em;*/
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+ }
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+
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+ .tab-content--vert{
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+ flex-direction:row;
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+ }
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+
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+
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+ /* Choices options Results page */
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+ .Results_info{
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+ display:flex;
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+ flex-direction:row;
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+ }
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+
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+ #menu_results{
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+ display:flex;
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+ flex-direction:row;
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+ justify-content:space-around;
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+ }
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+
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+ .results_menu_dropdowns{
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+ width:72%;
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+ margin-right:3%;
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+ margin-bottom:4em;
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+ }
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+
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+ .dropdowns{
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+ display:flex;
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+ margin:auto 15px;
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+ align-item:lines;
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+ }
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+
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+ #design_dropdown{
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+ min-width:10em;
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+ /*margin-top:3px;*/
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+ }
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+
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+ #ml_dropdown{
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+ min-width:15em;
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+ /*margin-top:3px;*/
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+ }
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+
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+
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+ /* Results sub tabs */
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+ #main_plots-content{
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+ width:100%;
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+ }
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+
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+ .custom_sub_tabs{
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+ margin-bottom:2em;
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+ }
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+
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+ .sub_tab{
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+ width:100%;
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+ }
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+
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+ .acc_plot_and_title{
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+ width:72%;
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+ margin-right:3%;
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+ }
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+
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+ .umap_plot_and_title{
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+ width:60%;
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+ margin-left:3%;
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+ }
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+
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+ .fig_group{
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+ display:flex;
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+ flex-direction:row;
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+ align-items:flex-start;
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+ justify-content:center;
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+ flex-grow:1;
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+ margin-top:1em;
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+ margin-bottom:1em;
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+ }
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+
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+ .fig_group_col{
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+ display:flex;
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+ align-items:flex-start;
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+ flex-grow:1;
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+ margin-bottom:1em;
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+ flex-direction:column;
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+ }
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+
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+ .fig_group_mini{
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+ display:flex;
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+ flex-direction:row;
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+ align-items:flex-start;
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+ justify-content:center;
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+ flex-grow:1;
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+ margin-top:1em;
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+ /*margin-bottom:1em;*/
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+ }
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+
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+ .fig_group_all_width{
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+ margin-left: 5%;
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+ margin-right: 5%;
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+ }
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+
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+ .pca_plot_and_title{
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+ width:70%;
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+ margin-left:3%;
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+ }
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+
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+ .bxplot_plot_select_and_title{
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+ width:37%;
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+ margin-right:3%;
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+ }
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+
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+ #all_algo_results{
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+ display: flex;
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+ justify-content: space-around;
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+ }
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+
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+ #design_dropdown_summary{
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+ min-width: 15em;
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+ }
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+
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+
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+ /************************
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+ * Not used anymore *
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+ ************************/
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+ .square_bg_effect{
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+ display:flex;
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+ flex-direction:column;
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+ justify-content:center;
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+ margin: 0 2em 2em 2em;
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+ padding: 1em 1.5em 1.5em 1.5em;
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+ background-color:#f9f9f9;
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+ box-shadow: 2px 2px 2px lightgrey;
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+ flex-grow:1;
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+ }
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+
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+ .square_bg_effect H6{
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+ margin-top:5px;
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+ }
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+
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+ .keep_right_div{
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+ display:flex;
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+ justify-content:flex-end;
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+ }
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+
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+ .help_icon{
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+ overflow:visible;
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+ width:1.5em;
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+ height:1.5em;
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+ }
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+
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+ .help_img{
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+ width:100%;
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+ height:100%;
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+ }
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+
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+ .help_bubble{
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+ padding:1em;
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+ width:30em;
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+ height:10em;
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+ background-color:white;
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+ box-shadow: 0px 0px 15px #3E3E3E;
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+ overflow-y:auto;
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+
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+ position:relative;
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+ bottom: 13em;
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+ right: 30em;
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+ opacity:0;
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+ visibility:hidden;
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+ }
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+
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+ .help_icon:hover .help_bubble{
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+ opacity:0.9;
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+ visibility:visible;
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+ z-index:999;
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+ }
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