physioblocks 1.1.1__py3-none-any.whl → 1.1.2__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- physioblocks/__init__.py +1 -1
- physioblocks/references/full_configurations/circulation_alone_sim.jsonc +146 -0
- physioblocks/references/full_configurations/spherical_heart_respiration_sim.jsonc +387 -0
- physioblocks/references/full_configurations/spherical_heart_sim.jsonc +343 -0
- {physioblocks-1.1.1.dist-info → physioblocks-1.1.2.dist-info}/METADATA +1 -1
- {physioblocks-1.1.1.dist-info → physioblocks-1.1.2.dist-info}/RECORD +9 -6
- {physioblocks-1.1.1.dist-info → physioblocks-1.1.2.dist-info}/WHEEL +0 -0
- {physioblocks-1.1.1.dist-info → physioblocks-1.1.2.dist-info}/licenses/licenses/GPL-3.0-only.txt +0 -0
- {physioblocks-1.1.1.dist-info → physioblocks-1.1.2.dist-info}/licenses/licenses/LGPL-3.0-only.txt +0 -0
physioblocks/__init__.py
CHANGED
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@@ -0,0 +1,146 @@
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{
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"type": "forward_simulation",
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"time": {
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"type": "time",
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"step_size": 0.001,
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"min_step": 6.25e-05,
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"start": 0.0,
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"duration": 25.0
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},
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"solver": {
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"type": "linear_solver"
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},
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"net": {
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"type": "net",
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"flux_dof_definitions": {
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"blood_flow": "blood_pressure"
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},
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"nodes": [
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"aorta_proximal",
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"aorta_distal",
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"venous"
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],
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"blocks": {
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"circulation_aorta_proximal": {
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"type": "block_description",
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"model_type": "rc_block",
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"time": "time",
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"flux_type": "blood_flow",
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"resistance": "aorta_proximal.resistance",
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"capacitance": "aorta_proximal.capacitance",
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"nodes": {
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"1": "aorta_distal",
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"2": "aorta_proximal"
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}
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},
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"circulation_aorta_distal": {
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"type": "block_description",
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"model_type": "rc_block",
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"time": "time",
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"flux_type": "blood_flow",
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"resistance": "aorta_distal.resistance",
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"capacitance": "aorta_distal.capacitance",
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"nodes": {
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"1": "venous",
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"2": "aorta_distal"
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}
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}
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},
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"boundaries_conditions": {
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"aorta_proximal": [
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{
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"type": "condition",
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"condition_type": "blood_flow",
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"condition_id": "aorta_proximal.blood_flow"
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}
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],
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"venous": [
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{
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"type": "condition",
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"condition_type": "blood_pressure",
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"condition_id": "venous.blood_pressure"
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}
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]
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}
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},
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"variables_magnitudes": {
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"aorta_proximal.blood_pressure": 100000.0,
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"aorta_distal.blood_pressure": 100000.0
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},
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"parameters": {
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"heartbeat_duration": {
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"type": "product",
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"factors": [
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60.0
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],
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"inverses": [
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"heart_rate"
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]
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},
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"aorta_proximal.capacitance": 2e-10,
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"aorta_proximal.blood_flow": {
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"type": "rescale_two_phases_function",
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"rescaled_period": "heartbeat_duration",
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"alpha": 0.8,
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"reference_function": [
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[
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0.0,
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"aorta_proximal.blood_flow.min"
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],
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[
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0.075,
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"aorta_proximal.blood_flow.min"
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],
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[
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0.134,
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"aorta_proximal.blood_flow.max"
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],
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[
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0.142,
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"aorta_proximal.blood_flow.max"
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],
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[
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0.281,
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"aorta_proximal.blood_flow.min"
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],
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[
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0.9,
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"aorta_proximal.blood_flow.min"
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]
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],
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"phases": [
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0,
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0,
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1,
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1,
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0
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]
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},
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"aorta_distal.capacitance": {
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"type": "product",
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"factors": [
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"aorta_distal.time_constant"
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],
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"inverses": [
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"aorta_distal.resistance"
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]
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},
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"heart_rate": 60.0,
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"aorta_proximal.resistance": 7000000.0,
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"aorta_distal.resistance": 110000000.0,
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"aorta_distal.time_constant": 2.0,
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"venous.blood_pressure": 1600.0,
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"aorta_proximal.blood_flow.min": 0.0,
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"aorta_proximal.blood_flow.max": 0.0005
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},
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"variables_initialization": {
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"aorta_proximal.blood_pressure": 10760.0,
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"aorta_distal.blood_pressure": 10760.0
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},
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"output_functions": {
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"aorta_proximal.blood_flow": {
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"type": "watch_quantity",
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"quantity": "aorta_proximal.blood_flow"
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}
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}
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}
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{
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"type": "forward_simulation",
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"time": {
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"type": "time",
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"step_size": 0.001,
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"min_step": 6.25e-05,
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"start": 0.0,
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"duration": 25.0
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},
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"solver": {
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"type": "newton_solver",
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"tolerance": 1e-09,
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"iteration_max": 10
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},
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"net": {
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"type": "net",
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"flux_dof_definitions": {
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"blood_flow": "blood_pressure"
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},
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"nodes": [
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"cavity",
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"atrial",
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"aorta_proximal",
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"aorta_distal",
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"venous"
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],
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"blocks": {
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"cavity": {
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"type": "block_description",
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"model_type": "spherical_cavity_block",
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"time": "time",
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"flux_type": "blood_flow",
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"disp": "cavity.dynamics.disp",
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"radius": "heart_radius",
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"thickness": "heart_thickness",
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"submodels": {
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"dynamics": {
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"type": "model_description",
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"model_type": "spherical_dynamics",
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"time": "time",
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"fib_deform": "cavity.rheology.fib_deform",
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"pressure": "cavity.blood_pressure",
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"pressure_external": "pleural.pressure",
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"vel": "cavity.velocity_law.vel",
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"radius": "heart_radius",
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"thickness": "heart_thickness",
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"series_stiffness": "cavity.rheology.series_stiffness"
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},
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"velocity_law": {
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"type": "model_description",
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"model_type": "velocity_law_hht",
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"time": "time",
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"disp": "cavity.dynamics.disp"
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},
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"rheology": {
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"type": "model_description",
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"model_type": "rheology_fiber_additive",
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"time": "time",
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"disp": "cavity.dynamics.disp",
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"active_tension_discr": "cavity.rheology.active_law.active_tension_discr",
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"radius": "heart_radius",
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"submodels": {
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"active_law": {
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"type": "model_description",
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"model_type": "active_law_macro_huxley_two_moments",
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"time": "time",
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"fib_deform": "cavity.rheology.fib_deform",
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"contractility": "heart_contractility"
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}
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}
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}
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},
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"nodes": {
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"1": "cavity"
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}
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},
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"valve_atrium": {
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"type": "block_description",
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"model_type": "valve_rl_block",
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"time": "time",
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"flux_type": "blood_flow",
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"backward_conductance": "conductance_iso",
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"nodes": {
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"1": "atrial",
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"2": "cavity"
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}
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},
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"valve_arterial": {
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"type": "block_description",
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"model_type": "valve_rl_block",
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"time": "time",
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"flux_type": "blood_flow",
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"backward_conductance": "conductance_iso",
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"nodes": {
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"1": "cavity",
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"2": "aorta_proximal"
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}
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},
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"capacitance_valve": {
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"type": "block_description",
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"model_type": "c_block",
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"time": "time",
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"flux_type": "blood_flow",
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"nodes": {
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"1": "cavity"
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}
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},
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"circulation_aorta_proximal": {
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"type": "block_description",
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"model_type": "rc_block",
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"time": "time",
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"flux_type": "blood_flow",
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"nodes": {
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"1": "aorta_distal",
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"2": "aorta_proximal"
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}
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},
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"circulation_aorta_distal": {
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"type": "block_description",
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"model_type": "rc_block",
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"time": "time",
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"flux_type": "blood_flow",
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"nodes": {
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"1": "venous",
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"2": "aorta_distal"
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}
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}
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},
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"boundaries_conditions": {
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"atrial": [
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{
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"type": "condition",
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"condition_type": "blood_pressure",
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"condition_id": "atrial.blood_pressure"
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}
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],
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"venous": [
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{
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"type": "condition",
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"condition_type": "blood_pressure",
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"condition_id": "venous.blood_pressure"
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}
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]
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}
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},
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"variables_initialization": {
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"valve_atrium.flux": 0.0,
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"valve_arterial.flux": 0.0,
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"cavity.dynamics.disp": 0.0,
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"cavity.velocity_law.vel": 0.0,
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"cavity.velocity_law.accel": 0.0,
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"cavity.rheology.fib_deform": 0.0,
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"cavity.rheology.active_law.active_stiffness": 1.0,
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"cavity.rheology.active_law.active_energy_sqrt": 0.0,
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"cavity.rheology.active_law.active_tension_discr": 0.0,
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"cavity.blood_pressure": "atrial.blood_pressure.max",
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"aorta_proximal.blood_pressure": 10760.0,
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"aorta_distal.blood_pressure": 10760.0
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},
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"variables_magnitudes": {
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"valve_atrium.flux": 0.001,
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"valve_arterial.flux": 0.001,
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"cavity.dynamics.disp": 0.01,
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"cavity.rheology.fib_deform": 0.1,
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"cavity.velocity_law.vel": 0.1,
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"cavity.velocity_law.accel": 1.0,
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"aorta_proximal.blood_pressure": 10000.0,
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"aorta_distal.blood_pressure": 10000.0,
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"cavity.blood_pressure": 10000.0,
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"cavity.rheology.active_law.active_stiffness": 100000.0,
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|
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|
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|
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|
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|
|
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|
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|
|
185
|
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"type": "sinus_offset",
|
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|
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
225
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|
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248
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|
|
249
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250
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|
252
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|
|
253
|
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|
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|
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|
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|
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|
|
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|
|
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|
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|
|
261
|
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|
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|
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|
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|
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
289
|
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|
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|
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|
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|
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|
|
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|
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|
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|
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|
|
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|
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|
|
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|
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|
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|
|
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|
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|
|
305
|
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|
|
306
|
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|
|
307
|
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|
|
308
|
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|
|
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|
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|
|
310
|
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|
|
311
|
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|
|
312
|
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|
|
313
|
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|
|
314
|
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"type": "product",
|
|
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|
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"factors": [
|
|
316
|
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|
|
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|
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|
|
318
|
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|
|
319
|
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|
|
320
|
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|
|
321
|
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|
|
322
|
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|
|
323
|
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|
|
324
|
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|
|
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{
|
|
326
|
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327
|
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328
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|
329
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|
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|
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|
|
331
|
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|
|
332
|
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|
|
333
|
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|
|
334
|
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|
|
335
|
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|
|
336
|
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|
|
337
|
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|
|
338
|
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|
|
339
|
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|
|
340
|
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|
|
341
|
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|
|
342
|
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]
|
|
343
|
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},
|
|
344
|
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|
|
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|
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|
|
346
|
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|
|
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|
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|
|
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|
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],
|
|
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|
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|
|
350
|
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|
|
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|
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]
|
|
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|
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},
|
|
353
|
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|
|
354
|
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|
|
355
|
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|
|
356
|
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|
|
357
|
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|
|
358
|
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|
|
359
|
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|
|
360
|
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|
|
361
|
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|
|
362
|
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|
|
363
|
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|
|
364
|
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"circulation_aorta_distal.resistance": 110000000.0,
|
|
365
|
+
"circulation_aorta_distal.time_constant": 2.0,
|
|
366
|
+
"cavity.dynamics.hyperelastic_cst": [
|
|
367
|
+
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|
|
368
|
+
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|
|
369
|
+
69.0,
|
|
370
|
+
6.5
|
|
371
|
+
]
|
|
372
|
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},
|
|
373
|
+
"output_functions": {
|
|
374
|
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"atrial.blood_pressure": {
|
|
375
|
+
"type": "watch_quantity",
|
|
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|
+
"quantity": "atrial.blood_pressure"
|
|
377
|
+
},
|
|
378
|
+
"active_law.activation": {
|
|
379
|
+
"type": "watch_quantity",
|
|
380
|
+
"quantity": "cavity.rheology.active_law.activation"
|
|
381
|
+
},
|
|
382
|
+
"pleural.pressure": {
|
|
383
|
+
"type": "watch_quantity",
|
|
384
|
+
"quantity": "pleural.pressure"
|
|
385
|
+
}
|
|
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|
+
}
|
|
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|
+
}
|
|
@@ -0,0 +1,343 @@
|
|
|
1
|
+
{
|
|
2
|
+
"type": "forward_simulation",
|
|
3
|
+
"time": {
|
|
4
|
+
"type": "time",
|
|
5
|
+
"step_size": 0.001,
|
|
6
|
+
"min_step": 6.25e-05,
|
|
7
|
+
"start": 0.0,
|
|
8
|
+
"duration": 25.0
|
|
9
|
+
},
|
|
10
|
+
"solver": {
|
|
11
|
+
"type": "newton_solver",
|
|
12
|
+
"tolerance": 1e-09,
|
|
13
|
+
"iteration_max": 10
|
|
14
|
+
},
|
|
15
|
+
"net": {
|
|
16
|
+
"type": "net",
|
|
17
|
+
"flux_dof_definitions": {
|
|
18
|
+
"blood_flow": "blood_pressure"
|
|
19
|
+
},
|
|
20
|
+
"nodes": [
|
|
21
|
+
"cavity",
|
|
22
|
+
"atrial",
|
|
23
|
+
"aorta_proximal",
|
|
24
|
+
"aorta_distal",
|
|
25
|
+
"venous"
|
|
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|
+
],
|
|
27
|
+
"blocks": {
|
|
28
|
+
"cavity": {
|
|
29
|
+
"type": "block_description",
|
|
30
|
+
"model_type": "spherical_cavity_block",
|
|
31
|
+
"time": "time",
|
|
32
|
+
"flux_type": "blood_flow",
|
|
33
|
+
"disp": "cavity.dynamics.disp",
|
|
34
|
+
"radius": "heart_radius",
|
|
35
|
+
"thickness": "heart_thickness",
|
|
36
|
+
"submodels": {
|
|
37
|
+
"dynamics": {
|
|
38
|
+
"type": "model_description",
|
|
39
|
+
"model_type": "spherical_dynamics",
|
|
40
|
+
"time": "time",
|
|
41
|
+
"fib_deform": "cavity.rheology.fib_deform",
|
|
42
|
+
"pressure": "cavity.blood_pressure",
|
|
43
|
+
"pressure_external": "pleural.pressure",
|
|
44
|
+
"vel": "cavity.velocity_law.vel",
|
|
45
|
+
"radius": "heart_radius",
|
|
46
|
+
"thickness": "heart_thickness",
|
|
47
|
+
"series_stiffness": "cavity.rheology.series_stiffness"
|
|
48
|
+
},
|
|
49
|
+
"velocity_law": {
|
|
50
|
+
"type": "model_description",
|
|
51
|
+
"model_type": "velocity_law_hht",
|
|
52
|
+
"time": "time",
|
|
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|
+
"disp": "cavity.dynamics.disp"
|
|
54
|
+
},
|
|
55
|
+
"rheology": {
|
|
56
|
+
"type": "model_description",
|
|
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|
+
"model_type": "rheology_fiber_additive",
|
|
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|
+
"time": "time",
|
|
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|
+
"disp": "cavity.dynamics.disp",
|
|
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|
+
"active_tension_discr": "cavity.rheology.active_law.active_tension_discr",
|
|
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|
+
"radius": "heart_radius",
|
|
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|
+
"submodels": {
|
|
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|
+
"active_law": {
|
|
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|
+
"type": "model_description",
|
|
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|
+
"model_type": "active_law_macro_huxley_two_moments",
|
|
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|
+
"time": "time",
|
|
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|
+
"fib_deform": "cavity.rheology.fib_deform",
|
|
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|
+
"contractility": "heart_contractility"
|
|
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|
+
}
|
|
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|
+
}
|
|
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|
+
}
|
|
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|
+
},
|
|
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|
+
"nodes": {
|
|
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|
+
"1": "cavity"
|
|
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|
+
}
|
|
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|
+
},
|
|
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|
+
"valve_atrium": {
|
|
78
|
+
"type": "block_description",
|
|
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|
+
"model_type": "valve_rl_block",
|
|
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|
+
"time": "time",
|
|
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|
+
"flux_type": "blood_flow",
|
|
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|
+
"backward_conductance": "conductance_iso",
|
|
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|
+
"nodes": {
|
|
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|
+
"1": "atrial",
|
|
85
|
+
"2": "cavity"
|
|
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|
+
}
|
|
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|
+
},
|
|
88
|
+
"valve_arterial": {
|
|
89
|
+
"type": "block_description",
|
|
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|
+
"model_type": "valve_rl_block",
|
|
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|
+
"time": "time",
|
|
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|
+
"flux_type": "blood_flow",
|
|
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|
+
"backward_conductance": "conductance_iso",
|
|
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|
+
"nodes": {
|
|
95
|
+
"1": "cavity",
|
|
96
|
+
"2": "aorta_proximal"
|
|
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|
+
}
|
|
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|
+
},
|
|
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|
+
"capacitance_valve": {
|
|
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|
+
"type": "block_description",
|
|
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|
+
"model_type": "c_block",
|
|
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|
+
"time": "time",
|
|
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|
+
"flux_type": "blood_flow",
|
|
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|
+
"nodes": {
|
|
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|
+
"1": "cavity"
|
|
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|
+
}
|
|
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|
+
},
|
|
108
|
+
"circulation_aorta_proximal": {
|
|
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|
+
"type": "block_description",
|
|
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|
+
"model_type": "rc_block",
|
|
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|
+
"time": "time",
|
|
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|
+
"flux_type": "blood_flow",
|
|
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|
+
"nodes": {
|
|
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|
+
"1": "aorta_distal",
|
|
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|
+
"2": "aorta_proximal"
|
|
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|
+
}
|
|
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|
+
},
|
|
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|
+
"circulation_aorta_distal": {
|
|
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|
+
"type": "block_description",
|
|
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|
+
"model_type": "rc_block",
|
|
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|
+
"time": "time",
|
|
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|
+
"flux_type": "blood_flow",
|
|
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|
+
"nodes": {
|
|
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|
+
"1": "venous",
|
|
125
|
+
"2": "aorta_distal"
|
|
126
|
+
}
|
|
127
|
+
}
|
|
128
|
+
},
|
|
129
|
+
"boundaries_conditions": {
|
|
130
|
+
"atrial": [
|
|
131
|
+
{
|
|
132
|
+
"type": "condition",
|
|
133
|
+
"condition_type": "blood_pressure",
|
|
134
|
+
"condition_id": "atrial.blood_pressure"
|
|
135
|
+
}
|
|
136
|
+
],
|
|
137
|
+
"venous": [
|
|
138
|
+
{
|
|
139
|
+
"type": "condition",
|
|
140
|
+
"condition_type": "blood_pressure",
|
|
141
|
+
"condition_id": "venous.blood_pressure"
|
|
142
|
+
}
|
|
143
|
+
]
|
|
144
|
+
}
|
|
145
|
+
},
|
|
146
|
+
"variables_initialization": {
|
|
147
|
+
"valve_atrium.flux": 0.0,
|
|
148
|
+
"valve_arterial.flux": 0.0,
|
|
149
|
+
"cavity.dynamics.disp": 0.0,
|
|
150
|
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"cavity.velocity_law.vel": 0.0,
|
|
151
|
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"cavity.velocity_law.accel": 0.0,
|
|
152
|
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"cavity.rheology.fib_deform": 0.0,
|
|
153
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|
|
154
|
+
"cavity.rheology.active_law.active_energy_sqrt": 0.0,
|
|
155
|
+
"cavity.rheology.active_law.active_tension_discr": 0.0,
|
|
156
|
+
"cavity.blood_pressure": "atrial.blood_pressure.max",
|
|
157
|
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"aorta_proximal.blood_pressure": 10760.0,
|
|
158
|
+
"aorta_distal.blood_pressure": 10760.0
|
|
159
|
+
},
|
|
160
|
+
"variables_magnitudes": {
|
|
161
|
+
"valve_atrium.flux": 0.001,
|
|
162
|
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"valve_arterial.flux": 0.001,
|
|
163
|
+
"cavity.dynamics.disp": 0.01,
|
|
164
|
+
"cavity.rheology.fib_deform": 0.1,
|
|
165
|
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"cavity.velocity_law.vel": 0.1,
|
|
166
|
+
"cavity.velocity_law.accel": 1.0,
|
|
167
|
+
"aorta_proximal.blood_pressure": 10000.0,
|
|
168
|
+
"aorta_distal.blood_pressure": 10000.0,
|
|
169
|
+
"cavity.blood_pressure": 10000.0,
|
|
170
|
+
"cavity.rheology.active_law.active_stiffness": 100000.0,
|
|
171
|
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"cavity.rheology.active_law.active_energy_sqrt": 10.0,
|
|
172
|
+
"cavity.rheology.active_law.active_tension_discr": 10000.0
|
|
173
|
+
},
|
|
174
|
+
"parameters": {
|
|
175
|
+
"heartbeat_duration": {
|
|
176
|
+
"type": "product",
|
|
177
|
+
"factors": [
|
|
178
|
+
60.0
|
|
179
|
+
],
|
|
180
|
+
"inverses": [
|
|
181
|
+
"heart_rate"
|
|
182
|
+
]
|
|
183
|
+
},
|
|
184
|
+
"pleural.pressure": 0.0,
|
|
185
|
+
"diastole_scaling_factor": 0.8,
|
|
186
|
+
"cavity.dynamics.vol_mass": 1000.0,
|
|
187
|
+
"cavity.dynamics.damping_coef": 70.0,
|
|
188
|
+
"cavity.velocity_law.scheme_ts_hht": 0.4,
|
|
189
|
+
"cavity.rheology.series_stiffness": 100000000.0,
|
|
190
|
+
"cavity.rheology.damping_parallel": 70.0,
|
|
191
|
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|
|
192
|
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-0.1668,
|
|
193
|
+
-0.0073,
|
|
194
|
+
0.0534,
|
|
195
|
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0.0969,
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|
196
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0.1326,
|
|
197
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0.2016,
|
|
198
|
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0.4663,
|
|
199
|
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0.9187,
|
|
200
|
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1.1762
|
|
201
|
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],
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|
202
|
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"cavity.rheology.active_law.starling_ordinates": [
|
|
203
|
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0.0,
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204
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0.5614,
|
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205
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0.7748,
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|
206
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0.8933,
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|
207
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0.9618,
|
|
208
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1.0,
|
|
209
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1.0,
|
|
210
|
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0.1075,
|
|
211
|
+
0.0
|
|
212
|
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],
|
|
213
|
+
"cavity.rheology.active_law.destruction_rate": 12.0,
|
|
214
|
+
"cavity.rheology.active_law.crossbridge_stiffness": 273000.0,
|
|
215
|
+
"active_law.activation.min": -20.0,
|
|
216
|
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"active_law.activation.max": 35.0,
|
|
217
|
+
"cavity.rheology.active_law.activation": {
|
|
218
|
+
"type": "rescale_two_phases_function",
|
|
219
|
+
"rescaled_period": "heartbeat_duration",
|
|
220
|
+
"alpha": "diastole_scaling_factor",
|
|
221
|
+
"reference_function": [
|
|
222
|
+
[
|
|
223
|
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0.0,
|
|
224
|
+
"active_law.activation.min"
|
|
225
|
+
],
|
|
226
|
+
[
|
|
227
|
+
0.027,
|
|
228
|
+
"active_law.activation.min"
|
|
229
|
+
],
|
|
230
|
+
[
|
|
231
|
+
0.037,
|
|
232
|
+
0.0
|
|
233
|
+
],
|
|
234
|
+
[
|
|
235
|
+
0.145,
|
|
236
|
+
"active_law.activation.max"
|
|
237
|
+
],
|
|
238
|
+
[
|
|
239
|
+
0.309,
|
|
240
|
+
"active_law.activation.max"
|
|
241
|
+
],
|
|
242
|
+
[
|
|
243
|
+
0.417,
|
|
244
|
+
0.0
|
|
245
|
+
],
|
|
246
|
+
[
|
|
247
|
+
0.427,
|
|
248
|
+
"active_law.activation.min"
|
|
249
|
+
],
|
|
250
|
+
[
|
|
251
|
+
0.9,
|
|
252
|
+
"active_law.activation.min"
|
|
253
|
+
]
|
|
254
|
+
],
|
|
255
|
+
"phases": [
|
|
256
|
+
0,
|
|
257
|
+
0,
|
|
258
|
+
1,
|
|
259
|
+
1,
|
|
260
|
+
1,
|
|
261
|
+
0,
|
|
262
|
+
0
|
|
263
|
+
]
|
|
264
|
+
},
|
|
265
|
+
"atrial.blood_pressure": {
|
|
266
|
+
"type": "rescale_two_phases_function",
|
|
267
|
+
"rescaled_period": "heartbeat_duration",
|
|
268
|
+
"alpha": "diastole_scaling_factor",
|
|
269
|
+
"reference_function": [
|
|
270
|
+
[
|
|
271
|
+
0.0,
|
|
272
|
+
"atrial.blood_pressure.max"
|
|
273
|
+
],
|
|
274
|
+
[
|
|
275
|
+
0.02,
|
|
276
|
+
"atrial.blood_pressure.max"
|
|
277
|
+
],
|
|
278
|
+
[
|
|
279
|
+
0.07,
|
|
280
|
+
"atrial.blood_pressure.min"
|
|
281
|
+
],
|
|
282
|
+
[
|
|
283
|
+
0.84,
|
|
284
|
+
"atrial.blood_pressure.min"
|
|
285
|
+
],
|
|
286
|
+
[
|
|
287
|
+
0.9,
|
|
288
|
+
"atrial.blood_pressure.max"
|
|
289
|
+
]
|
|
290
|
+
],
|
|
291
|
+
"phases": [
|
|
292
|
+
1,
|
|
293
|
+
1,
|
|
294
|
+
0,
|
|
295
|
+
1
|
|
296
|
+
]
|
|
297
|
+
},
|
|
298
|
+
"conductance_iso": 5e-12,
|
|
299
|
+
"valve_atrium.inductance": 1000.0,
|
|
300
|
+
"valve_atrium.conductance": 9e-06,
|
|
301
|
+
"valve_arterial.inductance": 30000.0,
|
|
302
|
+
"valve_arterial.conductance": 1.3e-05,
|
|
303
|
+
"capacitance_valve.capacitance": 5e-12,
|
|
304
|
+
"valve_atrium.scheme_ts_flux": 0.25,
|
|
305
|
+
"valve_arterial.scheme_ts_flux": 0.25,
|
|
306
|
+
"circulation_aorta_proximal.capacitance": 2e-10,
|
|
307
|
+
"circulation_aorta_distal.capacitance": {
|
|
308
|
+
"type": "product",
|
|
309
|
+
"factors": [
|
|
310
|
+
"circulation_aorta_distal.time_constant"
|
|
311
|
+
],
|
|
312
|
+
"inverses": [
|
|
313
|
+
"circulation_aorta_distal.resistance"
|
|
314
|
+
]
|
|
315
|
+
},
|
|
316
|
+
"heart_radius": 0.034,
|
|
317
|
+
"heart_thickness": 0.0113,
|
|
318
|
+
"heart_contractility": 90000.0,
|
|
319
|
+
"heart_rate": 60.0,
|
|
320
|
+
"venous.blood_pressure": 1600.0,
|
|
321
|
+
"atrial.blood_pressure.min": 450.0,
|
|
322
|
+
"atrial.blood_pressure.max": 900.0,
|
|
323
|
+
"circulation_aorta_proximal.resistance": 7000000.0,
|
|
324
|
+
"circulation_aorta_distal.resistance": 110000000.0,
|
|
325
|
+
"circulation_aorta_distal.time_constant": 2.0,
|
|
326
|
+
"cavity.dynamics.hyperelastic_cst": [
|
|
327
|
+
444.0,
|
|
328
|
+
2.9,
|
|
329
|
+
69.0,
|
|
330
|
+
6.5
|
|
331
|
+
]
|
|
332
|
+
},
|
|
333
|
+
"output_functions": {
|
|
334
|
+
"atrial.blood_pressure": {
|
|
335
|
+
"type": "watch_quantity",
|
|
336
|
+
"quantity": "atrial.blood_pressure"
|
|
337
|
+
},
|
|
338
|
+
"active_law.activation": {
|
|
339
|
+
"type": "watch_quantity",
|
|
340
|
+
"quantity": "cavity.rheology.active_law.activation"
|
|
341
|
+
}
|
|
342
|
+
}
|
|
343
|
+
}
|
|
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physioblocks/__init__.py,sha256=
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|
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|
+
physioblocks/__init__.py,sha256=Ble2LZgwT5wRSMWSba_Kwp05grtnvY5pPiwxXxmtgcQ,1169
|
|
2
2
|
physioblocks/base/__init__.py,sha256=2h6bk0fe8pwQvJ15Buytg4SZzYOH-Ep7WqoD6pd1eOQ,986
|
|
3
3
|
physioblocks/base/operators.py,sha256=uUfswQZsaMNd2bd7wsaxSGFIYLAr1hQCQ6SQfYawdBc,5689
|
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4
4
|
physioblocks/base/registers.py,sha256=Cd0hmy1XqojjPQgb_jn4mGeAMTyWWgDkl3qJHCVjCRU,3119
|
|
@@ -86,8 +86,11 @@ physioblocks/utils/math_utils.py,sha256=w5MDs4cP5WiTPHe8WofFuNZZ20WDNLT0XmFGlbis
|
|
|
86
86
|
physioblocks/references/circulation_alone_sim.jsonc,sha256=qv27nzmK7jennhtCJ7wQ_f83mt9_YJSOTABjGCYMcZw,736
|
|
87
87
|
physioblocks/references/spherical_heart_respiration_sim.jsonc,sha256=kKq5xf94r90O1KpkCHk1qwgy6DJ37ePo3-8buEtcu5Y,1397
|
|
88
88
|
physioblocks/references/spherical_heart_sim.jsonc,sha256=kGGBqxY8dnmGKmpMv216kbneyJRGz_3VkcYn1OWavIA,1151
|
|
89
|
-
physioblocks
|
|
90
|
-
physioblocks
|
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91
|
-
physioblocks
|
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92
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physioblocks-1.1.
|
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93
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-
physioblocks-1.1.
|
|
89
|
+
physioblocks/references/full_configurations/circulation_alone_sim.jsonc,sha256=mHXNMl52Xf_RRc0lcP-udLV8jPp4OFaMPGL_Ov5TEjM,4276
|
|
90
|
+
physioblocks/references/full_configurations/spherical_heart_respiration_sim.jsonc,sha256=su6ExBBx6yZmoTRzBrTSA18QMFDB2f_S_vBGBmYeA1E,12703
|
|
91
|
+
physioblocks/references/full_configurations/spherical_heart_sim.jsonc,sha256=hQYj-TPEJx3DVqkGKYYOiPRfUBGCE6gWPmbcylbaG9g,11420
|
|
92
|
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physioblocks-1.1.2.dist-info/METADATA,sha256=YNDft9tKDvn1tQL_YlK-ZeEbW-qqYjG82V4rk4SUkEA,4728
|
|
93
|
+
physioblocks-1.1.2.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
|
|
94
|
+
physioblocks-1.1.2.dist-info/licenses/licenses/GPL-3.0-only.txt,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
|
|
95
|
+
physioblocks-1.1.2.dist-info/licenses/licenses/LGPL-3.0-only.txt,sha256=46mU2C5kSwOnkqkw9XQAJlhBL2JAf1_uCD8lVcXyMRg,7652
|
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+
physioblocks-1.1.2.dist-info/RECORD,,
|
|
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|
{physioblocks-1.1.1.dist-info → physioblocks-1.1.2.dist-info}/licenses/licenses/GPL-3.0-only.txt
RENAMED
|
File without changes
|
{physioblocks-1.1.1.dist-info → physioblocks-1.1.2.dist-info}/licenses/licenses/LGPL-3.0-only.txt
RENAMED
|
File without changes
|