physioblocks 1.0.1__py3-none-any.whl → 1.0.2__py3-none-any.whl

physioblocks/__init__.py

@@ -26,7 +26,7 @@
 
 """Physioblocks package definition"""
 
-__version__ = "1.0.1"
+__version__ = "1.0.2"
 __copyright__ = "INRIA"
 __license__ = "LGPL-3.0-only"
 __authors__ = [

physioblocks/library/aliases/simulations/circulation_alone_forward_simulation.jsonc

@@ -49,7 +49,5 @@
             "inverses": ["aorta_distal.resistance"]
         }
     },
-    "solver": {
-        "iteration_max": 2 // This problem is linear
-    }
+    "solver": {"type": "linear_solver"}
 }

physioblocks/simulation/solvers.py

@@ -114,6 +114,36 @@ class AbstractSolver(ABC):
         """
 
 
+LINEAR_SOLVER = "linear_solver"
+
+
+@register_type(LINEAR_SOLVER)
+class LinearSolver(AbstractSolver):
+    """
+    Implementation of the :class:`~.AbstractSolver` class for linear problems.
+    """
+
+    def solve(
+        self,
+        state: State,
+        system: EqSystem,
+        magnitudes: dict[str, float] | None = None,
+    ) -> Solution:
+        """
+        Solve the equation system directly
+
+        :return: the solution
+        :rtype: Solution
+        """
+        res = system.compute_residual()
+        grad = system.compute_gradient()
+
+        xn = np.linalg.solve(grad, res)
+        x = state.state_vector - xn
+
+        return Solution(x, True)
+
+
 # Type id for the Newton Solver
 NEWTON_SOLVER_TYPE_ID = "newton_solver"
 

{physioblocks-1.0.1.dist-info → physioblocks-1.0.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: physioblocks
-Version: 1.0.1
+Version: 1.0.2
 Dynamic: Author
 Dynamic: Author-email
 Dynamic: License
@@ -124,4 +124,7 @@ python -m physioblocks.launcher references/spherical_heart_sim.jsonc -v -t -s Qu
 ```
 
 
-Results will be available in the `$LAUNCHER_FOLDER_PATH$/simulations/QuickStart` series folder.
+Results will be available in the `$LAUNCHER_FOLDER_PATH$/simulations/QuickStart` series folder:
+* the csv file contains the simulation results.
+* the html allows you to visualize the results.
+* the log and json files are here for debug purposes.

{physioblocks-1.0.1.dist-info → physioblocks-1.0.2.dist-info}/RECORD

@@ -1,4 +1,4 @@
-physioblocks/__init__.py,sha256=cSi4KUq8godvq235F5W2XvSwnWGwtIdTSE3fINK6vn8,1169
+physioblocks/__init__.py,sha256=k1DWuRN43XnMTR_V8Z40ibaOqwYQsFj3GfqGm8lreEU,1169
 physioblocks/base/__init__.py,sha256=2h6bk0fe8pwQvJ15Buytg4SZzYOH-Ep7WqoD6pd1eOQ,986
 physioblocks/base/operators.py,sha256=uUfswQZsaMNd2bd7wsaxSGFIYLAr1hQCQ6SQfYawdBc,5689
 physioblocks/base/registers.py,sha256=Cd0hmy1XqojjPQgb_jn4mGeAMTyWWgDkl3qJHCVjCRU,3119
@@ -44,7 +44,7 @@ physioblocks/library/aliases/model_components/spherical_dynamics.json,sha256=Tcd
 physioblocks/library/aliases/model_components/velocity_law_hht.json,sha256=HKbc5_2hGuOiQKUvLGto6tBQI_Z5AbbhXp8Itwmo2ag,93
 physioblocks/library/aliases/nets/circulation_alone_net.json,sha256=M3TiXIXgaXCsdwfyA5cm3fqspViiIl0Kyb6NKMiFsQ8,874
 physioblocks/library/aliases/nets/spherical_heart_net.json,sha256=UnOSQslMJuvbT6dXXPWj-HEvqe6U4fG1CK17_sKTxM8,3057
-physioblocks/library/aliases/simulations/circulation_alone_forward_simulation.jsonc,sha256=0l4dKEvmY6-3NLB70B4zVF_OJs-bzgxAsesgr3KZ7P0,1983
+physioblocks/library/aliases/simulations/circulation_alone_forward_simulation.jsonc,sha256=F5MIEC-OI-VUcAhYU8SLesbZPAiy3Us1f4VuDd0TEiI,1948
 physioblocks/library/aliases/simulations/default_forward_simulation.jsonc,sha256=TE_82KWUYAQdMX4MpDGY-Hi_djpwYAhSB5uzYtzYqcA,136
 physioblocks/library/aliases/simulations/default_time.jsonc,sha256=LM2_EU-GvOeGXJMvXXyJeWEOv-cfy25luhcaSMj5hkw,165
 physioblocks/library/aliases/simulations/newton_method_solver.json,sha256=p0jgVCpySTR0Npo5iFZrUUys3SRcy4j_EesQw9SvoyA,79
@@ -75,7 +75,7 @@ physioblocks/simulation/functions.py,sha256=c6HFwXK8IAzH7gSkz9aMiXLqnWXn_4_9WsX4
 physioblocks/simulation/runtime.py,sha256=xMtUL07SSQYpskK_EnNi-qz2D1d4wlDAESWHPqMUHn8,16762
 physioblocks/simulation/saved_quantities.py,sha256=fKWr1wScqxHPhuCE7aDNs8lpm9oWfyLN8NZDus2knPM,4111
 physioblocks/simulation/setup.py,sha256=UmIklaHmfkxi_BIdYKOhorLoC9QT9D4oEXwC-Xfd6v0,18109
-physioblocks/simulation/solvers.py,sha256=IrLHrsLJhM97SYzeygz2-UkkNbpp2hsixCuUi0Nis98,7353
+physioblocks/simulation/solvers.py,sha256=h99-25G4f6Hd3Fa0yoRLTIvrih5035ldVQi8MuSsvrw,8014
 physioblocks/simulation/state.py,sha256=jE6fTxzsnGKch1H6mErunpi7lwTb_9fvs2Hx77LIaMA,10310
 physioblocks/simulation/time_manager.py,sha256=AbP_Y8mcG7-6x-3rGY5CHFQwKMqksO4HvdCJ-mU03d4,9381
 physioblocks/utils/__init__.py,sha256=EMwPHVznBryA1uOEFfY_11L9Sd9bdCU_x_huNgIaZtQ,988
@@ -86,8 +86,8 @@ physioblocks/utils/math_utils.py,sha256=w5MDs4cP5WiTPHe8WofFuNZZ20WDNLT0XmFGlbis
 physioblocks/references/circulation_alone_sim.jsonc,sha256=qv27nzmK7jennhtCJ7wQ_f83mt9_YJSOTABjGCYMcZw,736
 physioblocks/references/spherical_heart_respiration_sim.jsonc,sha256=kKq5xf94r90O1KpkCHk1qwgy6DJ37ePo3-8buEtcu5Y,1397
 physioblocks/references/spherical_heart_sim.jsonc,sha256=kGGBqxY8dnmGKmpMv216kbneyJRGz_3VkcYn1OWavIA,1151
-physioblocks-1.0.1.dist-info/METADATA,sha256=q9nDe7s9M-P1FdTf5yuGpLSlfaY1tU96Al-T3k5IMSM,4558
-physioblocks-1.0.1.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
-physioblocks-1.0.1.dist-info/licenses/licenses/GPL-3.0-only.txt,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
-physioblocks-1.0.1.dist-info/licenses/licenses/LGPL-3.0-only.txt,sha256=46mU2C5kSwOnkqkw9XQAJlhBL2JAf1_uCD8lVcXyMRg,7652
-physioblocks-1.0.1.dist-info/RECORD,,
+physioblocks-1.0.2.dist-info/METADATA,sha256=RSHib_291NvBs_EkprhxTCpvqwhELKRQmmUPtRAuxe4,4708
+physioblocks-1.0.2.dist-info/WHEEL,sha256=WLgqFyCfm_KASv4WHyYy0P3pM_m7J5L9k2skdKLirC8,87
+physioblocks-1.0.2.dist-info/licenses/licenses/GPL-3.0-only.txt,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
+physioblocks-1.0.2.dist-info/licenses/licenses/LGPL-3.0-only.txt,sha256=46mU2C5kSwOnkqkw9XQAJlhBL2JAf1_uCD8lVcXyMRg,7652
+physioblocks-1.0.2.dist-info/RECORD,,