phylogenie 2.0.8__py3-none-any.whl → 2.0.9__py3-none-any.whl

phylogenie/generators/dataset.py

@@ -41,19 +41,21 @@ class DatasetGenerator(ABC, cfg.StrictBaseModel):
         self._generate_one(filename=filename, rng=default_rng(seed), data=data)
 
     def _generate(self, rng: Generator, n_samples: int, output_dir: str) -> None:
-        data_dir = os.path.join(output_dir, DATA_DIRNAME)
-        if os.path.exists(data_dir):
-            print(f"Output directory {data_dir} already exists. Skipping.")
-            return
-        os.makedirs(data_dir)
-
         data: list[dict[str, Any]] = [{} for _ in range(n_samples)]
         if self.context is not None:
+            data_dir = os.path.join(output_dir, DATA_DIRNAME)
             for d, (k, v) in product(data, self.context.items()):
                 args = v.model_extra if v.model_extra is not None else {}
                 d[k] = np.array(getattr(rng, v.type)(**args)).tolist()
             df = pd.DataFrame([{"file_id": str(i), **d} for i, d in enumerate(data)])
             df.to_csv(os.path.join(output_dir, METADATA_FILENAME), index=False)
+        else:
+            data_dir = output_dir
+
+        if os.path.exists(data_dir):
+            print(f"Output directory {data_dir} already exists. Skipping.")
+            return
+        os.makedirs(data_dir)
 
         joblib.Parallel(n_jobs=self.n_jobs)(
             joblib.delayed(self.generate_one)(

{phylogenie-2.0.8.dist-info → phylogenie-2.0.9.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: phylogenie
-Version: 2.0.8
+Version: 2.0.9
 Summary: Generate phylogenetic datasets with minimal setup effort
 Author: Gabriele Marino
 Author-email: gabmarino.8601@gmail.com

{phylogenie-2.0.8.dist-info → phylogenie-2.0.9.dist-info}/RECORD

@@ -2,7 +2,7 @@ phylogenie/__init__.py,sha256=1w_0H9lg7hI3b-NLjKuzc34GbJJGyjLq9LrlogecTzI,1759
 phylogenie/generators/__init__.py,sha256=zsOxy28-9j9alOQLIgrOAFfmM58NNHO_NEtW-KXQXAY,888
 phylogenie/generators/alisim.py,sha256=dDqlSwLDbRE2u5SZlsq1mArobTBtuk0aeXY3m1N-bWA,2374
 phylogenie/generators/configs.py,sha256=5ZWdKhRUjlNifw7QKXbooKV1fElqfCk_jBGxfcjh8do,969
-phylogenie/generators/dataset.py,sha256=k6RYJpgxOL8a_yMq98WUF-dcJv8TwxaWnde0k13M4J0,2525
+phylogenie/generators/dataset.py,sha256=OB51YI9ilo-lrw8ETCDQAFh9iXWtPLBRyLg4JOjMi7c,2577
 phylogenie/generators/factories.py,sha256=O8wqL-PvZps0Dq6mQa_PTi4vBvky5LkQIy1jjfOUm-4,6944
 phylogenie/generators/trees.py,sha256=jukaVXGcPGzDBEYMGJ1MKqWt4XbAB5EEfuHXDpwKTqM,9173
 phylogenie/generators/typeguards.py,sha256=Qph6ZnQ7wDMUNvB0VWQKlq42f8wkKOnM42cfMqhNov4,862
@@ -21,8 +21,8 @@ phylogenie/treesimulator/gillespie.py,sha256=Fn-PyVICx3pWtpHko7rf6omf_kqOkkpebSJ
 phylogenie/treesimulator/model.py,sha256=XpzAicmg2O6K0Trk5YolH-B_HJZxoSauF2wZOMqp-Iw,5559
 phylogenie/typeguards.py,sha256=JtqmbEWJZBRHbWgCvcl6nrWm3VcBfzRbklbTBYHItn0,1325
 phylogenie/typings.py,sha256=O1X6lGKTjJ2YJz3ApQ-rYb_tEJNUIcHdUIeYlSM4s5o,500
-phylogenie-2.0.8.dist-info/LICENSE.txt,sha256=NUrDqElK-eD3I0WqC004CJsy6cs0JgsAoebDv_42-pw,1071
-phylogenie-2.0.8.dist-info/METADATA,sha256=VQdW_kK48caMP7UJDFDXi1RoY0vfOXnTSXrB-TXUmPU,5472
-phylogenie-2.0.8.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-phylogenie-2.0.8.dist-info/entry_points.txt,sha256=Rt6_usN0FkBX1ZfiqCirjMN9FKOgFLG8rydcQ8kugeE,51
-phylogenie-2.0.8.dist-info/RECORD,,
+phylogenie-2.0.9.dist-info/LICENSE.txt,sha256=NUrDqElK-eD3I0WqC004CJsy6cs0JgsAoebDv_42-pw,1071
+phylogenie-2.0.9.dist-info/METADATA,sha256=EHn9nzfQMQCfWXzl1Ddb_dTrowodP7Y4dsDQqsna2xw,5472
+phylogenie-2.0.9.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+phylogenie-2.0.9.dist-info/entry_points.txt,sha256=Rt6_usN0FkBX1ZfiqCirjMN9FKOgFLG8rydcQ8kugeE,51
+phylogenie-2.0.9.dist-info/RECORD,,