pheval 0.6.2__py3-none-any.whl → 0.6.3__py3-none-any.whl

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Files changed (7) hide show
  1. pheval/analyse/benchmark.py +4 -0
  2. pheval/analyse/run_data_parser.py +9 -0
  3. {pheval-0.6.2.dist-info → pheval-0.6.3.dist-info}/METADATA +1 -1
  4. {pheval-0.6.2.dist-info → pheval-0.6.3.dist-info}/RECORD +7 -7
  5. {pheval-0.6.2.dist-info → pheval-0.6.3.dist-info}/LICENSE +0 -0
  6. {pheval-0.6.2.dist-info → pheval-0.6.3.dist-info}/WHEEL +0 -0
  7. {pheval-0.6.2.dist-info → pheval-0.6.3.dist-info}/entry_points.txt +0 -0
pheval/analyse/benchmark.py CHANGED
@@ -1,3 +1,4 @@
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+ import sys
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  import time
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  from pathlib import Path
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  from typing import List, Tuple
@@ -135,6 +136,9 @@ def benchmark_runs(benchmark_config_file: Path) -> None:
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  start_time = time.perf_counter()
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  logger.info("Initiated benchmarking process.")
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  config = parse_run_config(benchmark_config_file)
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+ if Path(f"{config.benchmark_name}.duckdb").exists():
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+ logger.error(f"{config.benchmark_name}.duckdb already exists! Exiting.")
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+ sys.exit(1)
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  gene_analysis_runs = [run for run in config.runs if run.gene_analysis]
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  variant_analysis_runs = [run for run in config.runs if run.variant_analysis]
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  disease_analysis_runs = [run for run in config.runs if run.disease_analysis]
pheval/analyse/run_data_parser.py CHANGED
@@ -41,6 +41,15 @@ class RunConfig(BaseModel):
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  def set_score_order(cls, score_order):
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  return score_order or "descending"
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+ @field_validator("results_dir", mode="after")
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+ @classmethod
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+ def check_results_dir_exists(cls, results_dir: Path):
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+ if not results_dir.exists():
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+ raise FileNotFoundError(
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+ f"The specified results directory does not exist: {results_dir}"
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+ )
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+ return results_dir
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+
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  class SinglePlotCustomisation(BaseModel):
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  """
{pheval-0.6.2.dist-info → pheval-0.6.3.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: pheval
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- Version: 0.6.2
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+ Version: 0.6.3
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  Summary:
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  Author: Yasemin Bridges
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  Author-email: y.bridges@qmul.ac.uk
{pheval-0.6.2.dist-info → pheval-0.6.3.dist-info}/RECORD RENAMED
@@ -1,6 +1,6 @@
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  pheval/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  pheval/analyse/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- pheval/analyse/benchmark.py,sha256=sfjReLmodXwCT9ZyZDE6Oli0j1S5ygicJshb7n4-x4U,6916
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+ pheval/analyse/benchmark.py,sha256=s4ZHsvnZY9XNsbbBp_0JEny1bUpxLbcg0ls3J-wUtC8,7085
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  pheval/analyse/benchmark_db_manager.py,sha256=zS1TI76YuV2_YXLipHLSyh-XDR5kTxyOwhRhHRFHfjQ,764
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  pheval/analyse/benchmark_output_type.py,sha256=CBZmRhfz_g7cegYlZtcK2j18YY0iwjjAgNdb70sQiSM,1513
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  pheval/analyse/binary_classification_curves.py,sha256=Crb45rJWc5rxDdx82sgoHRvYHE2D5pus91fgl39FyRw,5007
@@ -8,7 +8,7 @@ pheval/analyse/binary_classification_stats.py,sha256=sOuEp6IxZ6SVp-KC6MJkZNTkZuc
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  pheval/analyse/generate_plots.py,sha256=g98DxhTw1dPRfRRYoKBmt51XfIa2KzlL_Z7weFSoBUg,14550
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  pheval/analyse/generate_rank_comparisons.py,sha256=KcQJ9rm1nvvTcqLNuxAkXRXuV18vEsiP0giQ-ryHyYc,1684
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  pheval/analyse/rank_stats.py,sha256=JLgbaumayUzVzpRh0IXlY7454HWShVJQVImifC0U4GA,8489
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- pheval/analyse/run_data_parser.py,sha256=Lr0ao_Mlp8EYLaM4XmiEjo7P7jt_rCBR2y2hb_D3c70,3366
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+ pheval/analyse/run_data_parser.py,sha256=UjuC9R2Ag3v6BDU-xjVn1iFfYDQLlmE2ajl5gXwF9uQ,3688
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  pheval/cli.py,sha256=Yow7JLwYvtFc8W1U0V1g5bzxMICsv05NWm2PAsFwqvM,1591
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  pheval/cli_pheval.py,sha256=N8xp3r8avYqLswPhakxtTQyemVdgHAvnpAIj_FmoN5k,3510
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  pheval/cli_pheval_utils.py,sha256=sh6kx36jYfuSIWBMlrdW3g-LPftxBy-xw4b7hg8bdj4,16545
@@ -50,8 +50,8 @@ pheval/utils/logger.py,sha256=5DZl5uMltUDQorhkvg_B7_ZhFwApAmEkWneFIOKfRGQ,1566
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  pheval/utils/phenopacket_utils.py,sha256=XGnFLarvXezFR0W5frzyGTwEbhcA3zuGJPg1r5YBscg,27326
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  pheval/utils/semsim_utils.py,sha256=s7ZCR2VfPYnOh7ApX6rv66eGoVSm9QJaVYOWBEhlXpo,6151
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  pheval/utils/utils.py,sha256=23bQPL-HmzHnMRJSe4doJdj6rtmFyfO77FOH3wyFZZI,4518
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- pheval-0.6.2.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
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- pheval-0.6.2.dist-info/METADATA,sha256=JoaNkCAumkYxaLgAjBL8_dStiIaRxM18wsBER0TQIeA,6494
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- pheval-0.6.2.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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- pheval-0.6.2.dist-info/entry_points.txt,sha256=o9gSwDkvT4-lqKy4mlsftd1nzP9WUOXQCfnbqycURd0,81
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- pheval-0.6.2.dist-info/RECORD,,
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+ pheval-0.6.3.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
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+ pheval-0.6.3.dist-info/METADATA,sha256=Q0AX7IoMMvNPMpEYNLY2Ijdp5vSZgmpvDB6r2Q9zZgA,6494
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+ pheval-0.6.3.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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+ pheval-0.6.3.dist-info/entry_points.txt,sha256=o9gSwDkvT4-lqKy4mlsftd1nzP9WUOXQCfnbqycURd0,81
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+ pheval-0.6.3.dist-info/RECORD,,
{pheval-0.6.2.dist-info → pheval-0.6.3.dist-info}/WHEEL RENAMED
File without changes