pheval 0.1.0__py3-none-any.whl → 0.2.0__py3-none-any.whl

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Files changed (42) hide show
  1. pheval/__init__.py +0 -5
  2. pheval/analyse/__init__.py +0 -0
  3. pheval/analyse/analysis.py +703 -0
  4. pheval/analyse/generate_plots.py +312 -0
  5. pheval/analyse/generate_summary_outputs.py +186 -0
  6. pheval/analyse/rank_stats.py +61 -0
  7. pheval/cli.py +22 -7
  8. pheval/cli_pheval.py +37 -12
  9. pheval/cli_pheval_utils.py +225 -8
  10. pheval/config_parser.py +36 -0
  11. pheval/constants.py +1 -0
  12. pheval/implementations/__init__.py +1 -3
  13. pheval/post_processing/__init__.py +0 -0
  14. pheval/post_processing/post_processing.py +210 -0
  15. pheval/prepare/__init__.py +0 -0
  16. pheval/prepare/create_noisy_phenopackets.py +173 -0
  17. pheval/prepare/create_spiked_vcf.py +366 -0
  18. pheval/prepare/custom_exceptions.py +47 -0
  19. pheval/prepare/update_phenopacket.py +53 -0
  20. pheval/resources/alternate_ouputs/CADA_results.txt +11 -0
  21. pheval/resources/alternate_ouputs/DeepPVP_results.txt +22 -0
  22. pheval/resources/alternate_ouputs/OVA_results.txt +11 -0
  23. pheval/resources/alternate_ouputs/Phen2Gene_results.json +814 -0
  24. pheval/resources/alternate_ouputs/Phenolyzer_results.txt +12 -0
  25. pheval/resources/alternate_ouputs/lirical_results.tsv +152 -0
  26. pheval/resources/alternate_ouputs/svanna_results.tsv +9 -0
  27. pheval/resources/hgnc_complete_set_2022-10-01.txt +43222 -0
  28. pheval/run_metadata.py +27 -0
  29. pheval/runners/runner.py +92 -11
  30. pheval/utils/__init__.py +0 -0
  31. pheval/utils/docs_gen.py +105 -0
  32. pheval/utils/docs_gen.sh +18 -0
  33. pheval/utils/file_utils.py +88 -0
  34. pheval/utils/phenopacket_utils.py +356 -0
  35. pheval/utils/semsim_utils.py +156 -0
  36. {pheval-0.1.0.dist-info → pheval-0.2.0.dist-info}/METADATA +12 -4
  37. pheval-0.2.0.dist-info/RECORD +41 -0
  38. {pheval-0.1.0.dist-info → pheval-0.2.0.dist-info}/WHEEL +1 -1
  39. pheval/utils.py +0 -7
  40. pheval-0.1.0.dist-info/RECORD +0 -13
  41. {pheval-0.1.0.dist-info → pheval-0.2.0.dist-info}/LICENSE +0 -0
  42. {pheval-0.1.0.dist-info → pheval-0.2.0.dist-info}/entry_points.txt +0 -0
pheval/resources/alternate_ouputs/Phen2Gene_results.json ADDED
@@ -0,0 +1,814 @@
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+ [
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+ {
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+ "Gene": "SMC1A",
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+ "Rank": "1",
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+ "Gene ID": "SMC1A",
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+ "Score": "1.0",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "HDAC8",
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+ "Rank": "2",
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+ "Gene ID": "HDAC8",
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+ "Score": "0.998095",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "SMC3",
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+ "Rank": "3",
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+ "Gene ID": "SMC3",
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+ "Score": "0.97115",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "UBE3A",
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+ "Rank": "4",
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+ "Gene ID": "UBE3A",
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+ "Score": "0.953798",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "ELN",
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+ "Rank": "5",
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+ "Gene ID": "ELN",
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+ "Score": "0.901932",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "RAD21",
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+ "Rank": "6",
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+ "Gene ID": "RAD21",
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+ "Score": "0.880031",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "NIPBL",
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+ "Rank": "7",
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+ "Gene ID": "NIPBL",
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+ "Score": "0.823235",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "SLC26A2",
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+ "Rank": "8",
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+ "Gene ID": "SLC26A2",
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+ "Score": "0.821237",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "FBN1",
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+ "Rank": "9",
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+ "Gene ID": "FBN1",
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+ "Score": "0.769502",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "EHMT1",
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+ "Rank": "10",
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+ "Gene ID": "EHMT1",
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+ "Score": "0.760159",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "PTEN",
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+ "Rank": "11",
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+ "Gene ID": "PTEN",
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+ "Score": "0.758725",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "GNE",
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+ "Rank": "12",
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+ "Gene ID": "GNE",
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+ "Score": "0.751112",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "ZEB2",
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+ "Rank": "13",
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+ "Gene ID": "ZEB2",
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+ "Score": "0.738377",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "RAI1",
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+ "Rank": "14",
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+ "Gene ID": "RAI1",
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+ "Score": "0.697557",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "FGFR1",
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+ "Rank": "15",
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+ "Gene ID": "FGFR1",
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+ "Score": "0.685732",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "SHANK3",
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+ "Rank": "16",
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+ "Gene ID": "SHANK3",
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+ "Score": "0.649679",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "BRAF",
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+ "Rank": "17",
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+ "Gene ID": "BRAF",
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+ "Score": "0.624509",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "FGFR2",
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+ "Rank": "18",
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+ "Gene ID": "FGFR2",
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+ "Score": "0.611645",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "EZH2",
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+ "Rank": "19",
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+ "Gene ID": "EZH2",
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+ "Score": "0.585015",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "COL11A2",
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+ "Rank": "20",
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+ "Gene ID": "COL11A2",
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+ "Score": "0.578655",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "PAX3",
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+ "Rank": "21",
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+ "Gene ID": "PAX3",
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+ "Score": "0.577687",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "COL2A1",
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+ "Rank": "22",
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+ "Gene ID": "COL2A1",
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+ "Score": "0.577393",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "KANSL1",
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+ "Rank": "23",
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+ "Gene ID": "KANSL1",
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+ "Score": "0.571343",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "EXT1",
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+ "Rank": "24",
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+ "Gene ID": "EXT1",
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+ "Score": "0.549759",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "KCNJ2",
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+ "Rank": "25",
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+ "Gene ID": "KCNJ2",
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+ "Score": "0.549602",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "ABCC9",
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+ "Rank": "26",
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+ "Gene ID": "ABCC9",
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+ "Score": "0.547861",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "LIMK1",
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+ "Rank": "27",
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+ "Gene ID": "LIMK1",
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+ "Score": "0.540814",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "FGFR3",
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+ "Rank": "28",
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+ "Gene ID": "FGFR3",
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+ "Score": "0.532067",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "PIK3CA",
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+ "Rank": "29",
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+ "Gene ID": "PIK3CA",
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+ "Score": "0.53096",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "PTCH1",
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+ "Rank": "30",
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+ "Gene ID": "PTCH1",
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+ "Score": "0.525391",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "MLXIPL",
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+ "Rank": "31",
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+ "Gene ID": "MLXIPL",
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+ "Score": "0.508679",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "TAF1",
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+ "Rank": "32",
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+ "Gene ID": "TAF1",
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+ "Score": "0.493371",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "MMP2",
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+ "Rank": "33",
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+ "Gene ID": "MMP2",
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+ "Score": "0.488716",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "NOTCH2",
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+ "Rank": "34",
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+ "Gene ID": "NOTCH2",
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+ "Score": "0.48619",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "VDR",
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+ "Rank": "35",
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+ "Gene ID": "VDR",
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+ "Score": "0.482532",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "PHF6",
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+ "Rank": "36",
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+ "Gene ID": "PHF6",
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+ "Score": "0.480484",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "SMAD4",
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+ "Rank": "37",
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+ "Gene ID": "SMAD4",
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+ "Score": "0.479844",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "EP300",
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+ "Rank": "38",
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+ "Gene ID": "EP300",
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+ "Score": "0.477225",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "ATRX",
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+ "Rank": "39",
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+ "Gene ID": "ATRX",
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+ "Score": "0.473575",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "DHCR24",
277
+ "Rank": "40",
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+ "Gene ID": "DHCR24",
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+ "Score": "0.471119",
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+ "Status": "SeedGene"
281
+ },
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+ {
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+ "Gene": "KRAS",
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+ "Rank": "41",
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+ "Gene ID": "KRAS",
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+ "Score": "0.459601",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "RFC2",
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+ "Rank": "42",
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+ "Gene ID": "RFC2",
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+ "Score": "0.459383",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "KMT2A",
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+ "Rank": "43",
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+ "Gene ID": "KMT2A",
300
+ "Score": "0.457028",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "SEC23A",
305
+ "Rank": "44",
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+ "Gene ID": "SEC23A",
307
+ "Score": "0.452064",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "TRPS1",
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+ "Rank": "45",
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+ "Gene ID": "TRPS1",
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+ "Score": "0.443611",
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+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "GALE",
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+ "Rank": "46",
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+ "Gene ID": "GALE",
321
+ "Score": "0.439685",
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+ "Status": "SeedGene"
323
+ },
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+ {
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+ "Gene": "ADSL",
326
+ "Rank": "47",
327
+ "Gene ID": "ADSL",
328
+ "Score": "0.431883",
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+ "Status": "SeedGene"
330
+ },
331
+ {
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+ "Gene": "ROR2",
333
+ "Rank": "48",
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+ "Gene ID": "ROR2",
335
+ "Score": "0.431521",
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+ "Status": "SeedGene"
337
+ },
338
+ {
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+ "Gene": "CDH1",
340
+ "Rank": "49",
341
+ "Gene ID": "CDH1",
342
+ "Score": "0.426678",
343
+ "Status": "SeedGene"
344
+ },
345
+ {
346
+ "Gene": "DLAT",
347
+ "Rank": "50",
348
+ "Gene ID": "DLAT",
349
+ "Score": "0.425481",
350
+ "Status": "SeedGene"
351
+ },
352
+ {
353
+ "Gene": "OFD1",
354
+ "Rank": "51",
355
+ "Gene ID": "OFD1",
356
+ "Score": "0.421681",
357
+ "Status": "SeedGene"
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+ },
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+ {
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+ "Gene": "ACTB",
361
+ "Rank": "52",
362
+ "Gene ID": "ACTB",
363
+ "Score": "0.414503",
364
+ "Status": "SeedGene"
365
+ },
366
+ {
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+ "Gene": "MAP2K1",
368
+ "Rank": "53",
369
+ "Gene ID": "MAP2K1",
370
+ "Score": "0.412932",
371
+ "Status": "SeedGene"
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+ },
373
+ {
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+ "Gene": "CNTNAP2",
375
+ "Rank": "54",
376
+ "Gene ID": "CNTNAP2",
377
+ "Score": "0.411207",
378
+ "Status": "SeedGene"
379
+ },
380
+ {
381
+ "Gene": "RAF1",
382
+ "Rank": "55",
383
+ "Gene ID": "RAF1",
384
+ "Score": "0.409755",
385
+ "Status": "SeedGene"
386
+ },
387
+ {
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+ "Gene": "SNRPN",
389
+ "Rank": "56",
390
+ "Gene ID": "SNRPN",
391
+ "Score": "0.407601",
392
+ "Status": "SeedGene"
393
+ },
394
+ {
395
+ "Gene": "EIF4H",
396
+ "Rank": "57",
397
+ "Gene ID": "EIF4H",
398
+ "Score": "0.397574",
399
+ "Status": "SeedGene"
400
+ },
401
+ {
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+ "Gene": "MAP2K2",
403
+ "Rank": "58",
404
+ "Gene ID": "MAP2K2",
405
+ "Score": "0.390941",
406
+ "Status": "SeedGene"
407
+ },
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+ {
409
+ "Gene": "HRAS",
410
+ "Rank": "59",
411
+ "Gene ID": "HRAS",
412
+ "Score": "0.390654",
413
+ "Status": "SeedGene"
414
+ },
415
+ {
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+ "Gene": "PIK3R1",
417
+ "Rank": "60",
418
+ "Gene ID": "PIK3R1",
419
+ "Score": "0.38714",
420
+ "Status": "SeedGene"
421
+ },
422
+ {
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+ "Gene": "RPS6KA3",
424
+ "Rank": "61",
425
+ "Gene ID": "RPS6KA3",
426
+ "Score": "0.381356",
427
+ "Status": "SeedGene"
428
+ },
429
+ {
430
+ "Gene": "BAZ1B",
431
+ "Rank": "62",
432
+ "Gene ID": "BAZ1B",
433
+ "Score": "0.379658",
434
+ "Status": "SeedGene"
435
+ },
436
+ {
437
+ "Gene": "MED12",
438
+ "Rank": "63",
439
+ "Gene ID": "MED12",
440
+ "Score": "0.376916",
441
+ "Status": "SeedGene"
442
+ },
443
+ {
444
+ "Gene": "CREBBP",
445
+ "Rank": "64",
446
+ "Gene ID": "CREBBP",
447
+ "Score": "0.37639",
448
+ "Status": "SeedGene"
449
+ },
450
+ {
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+ "Gene": "PPP2CA",
452
+ "Rank": "65",
453
+ "Gene ID": "PPP2CA",
454
+ "Score": "0.373617",
455
+ "Status": "SeedGene"
456
+ },
457
+ {
458
+ "Gene": "PPP2R1A",
459
+ "Rank": "66",
460
+ "Gene ID": "PPP2R1A",
461
+ "Score": "0.370505",
462
+ "Status": "SeedGene"
463
+ },
464
+ {
465
+ "Gene": "FKBP6",
466
+ "Rank": "67",
467
+ "Gene ID": "FKBP6",
468
+ "Score": "0.369598",
469
+ "Status": "SeedGene"
470
+ },
471
+ {
472
+ "Gene": "DHCR7",
473
+ "Rank": "68",
474
+ "Gene ID": "DHCR7",
475
+ "Score": "0.367877",
476
+ "Status": "SeedGene"
477
+ },
478
+ {
479
+ "Gene": "CDC42",
480
+ "Rank": "69",
481
+ "Gene ID": "CDC42",
482
+ "Score": "0.36644",
483
+ "Status": "SeedGene"
484
+ },
485
+ {
486
+ "Gene": "CYFIP1",
487
+ "Rank": "70",
488
+ "Gene ID": "CYFIP1",
489
+ "Score": "0.366005",
490
+ "Status": "SeedGene"
491
+ },
492
+ {
493
+ "Gene": "AKT1",
494
+ "Rank": "71",
495
+ "Gene ID": "AKT1",
496
+ "Score": "0.36452",
497
+ "Status": "SeedGene"
498
+ },
499
+ {
500
+ "Gene": "GLI3",
501
+ "Rank": "72",
502
+ "Gene ID": "GLI3",
503
+ "Score": "0.36098",
504
+ "Status": "SeedGene"
505
+ },
506
+ {
507
+ "Gene": "LAT2",
508
+ "Rank": "73",
509
+ "Gene ID": "LAT2",
510
+ "Score": "0.360389",
511
+ "Status": "SeedGene"
512
+ },
513
+ {
514
+ "Gene": "CUL7",
515
+ "Rank": "74",
516
+ "Gene ID": "CUL7",
517
+ "Score": "0.355971",
518
+ "Status": "SeedGene"
519
+ },
520
+ {
521
+ "Gene": "INS",
522
+ "Rank": "75",
523
+ "Gene ID": "INS",
524
+ "Score": "0.353335",
525
+ "Status": "SeedGene"
526
+ },
527
+ {
528
+ "Gene": "TRRAP",
529
+ "Rank": "76",
530
+ "Gene ID": "TRRAP",
531
+ "Score": "0.351358",
532
+ "Status": "SeedGene"
533
+ },
534
+ {
535
+ "Gene": "PSMD12",
536
+ "Rank": "77",
537
+ "Gene ID": "PSMD12",
538
+ "Score": "0.350642",
539
+ "Status": "SeedGene"
540
+ },
541
+ {
542
+ "Gene": "TCF4",
543
+ "Rank": "78",
544
+ "Gene ID": "TCF4",
545
+ "Score": "0.350567",
546
+ "Status": "SeedGene"
547
+ },
548
+ {
549
+ "Gene": "ATP6V1A",
550
+ "Rank": "79",
551
+ "Gene ID": "ATP6V1A",
552
+ "Score": "0.350467",
553
+ "Status": "SeedGene"
554
+ },
555
+ {
556
+ "Gene": "OCRL",
557
+ "Rank": "80",
558
+ "Gene ID": "OCRL",
559
+ "Score": "0.348902",
560
+ "Status": "SeedGene"
561
+ },
562
+ {
563
+ "Gene": "NSD1",
564
+ "Rank": "81",
565
+ "Gene ID": "NSD1",
566
+ "Score": "0.3477",
567
+ "Status": "SeedGene"
568
+ },
569
+ {
570
+ "Gene": "NFIX",
571
+ "Rank": "82",
572
+ "Gene ID": "NFIX",
573
+ "Score": "0.344971",
574
+ "Status": "SeedGene"
575
+ },
576
+ {
577
+ "Gene": "GTF2I",
578
+ "Rank": "83",
579
+ "Gene ID": "GTF2I",
580
+ "Score": "0.343221",
581
+ "Status": "SeedGene"
582
+ },
583
+ {
584
+ "Gene": "TBL2",
585
+ "Rank": "84",
586
+ "Gene ID": "TBL2",
587
+ "Score": "0.342206",
588
+ "Status": "SeedGene"
589
+ },
590
+ {
591
+ "Gene": "MAPK1",
592
+ "Rank": "85",
593
+ "Gene ID": "MAPK1",
594
+ "Score": "0.340716",
595
+ "Status": "SeedGene"
596
+ },
597
+ {
598
+ "Gene": "CDKN2A",
599
+ "Rank": "86",
600
+ "Gene ID": "CDKN2A",
601
+ "Score": "0.335904",
602
+ "Status": "Predicted"
603
+ },
604
+ {
605
+ "Gene": "PAFAH1B1",
606
+ "Rank": "87",
607
+ "Gene ID": "PAFAH1B1",
608
+ "Score": "0.335756",
609
+ "Status": "SeedGene"
610
+ },
611
+ {
612
+ "Gene": "GTF2IRD1",
613
+ "Rank": "88",
614
+ "Gene ID": "GTF2IRD1",
615
+ "Score": "0.335204",
616
+ "Status": "SeedGene"
617
+ },
618
+ {
619
+ "Gene": "EDNRB",
620
+ "Rank": "89",
621
+ "Gene ID": "EDNRB",
622
+ "Score": "0.335107",
623
+ "Status": "SeedGene"
624
+ },
625
+ {
626
+ "Gene": "PDGFRB",
627
+ "Rank": "90",
628
+ "Gene ID": "PDGFRB",
629
+ "Score": "0.333018",
630
+ "Status": "SeedGene"
631
+ },
632
+ {
633
+ "Gene": "EFEMP2",
634
+ "Rank": "91",
635
+ "Gene ID": "EFEMP2",
636
+ "Score": "0.330748",
637
+ "Status": "SeedGene"
638
+ },
639
+ {
640
+ "Gene": "NFKB1",
641
+ "Rank": "92",
642
+ "Gene ID": "NFKB1",
643
+ "Score": "0.329046",
644
+ "Status": "SeedGene"
645
+ },
646
+ {
647
+ "Gene": "KIT",
648
+ "Rank": "93",
649
+ "Gene ID": "KIT",
650
+ "Score": "0.326814",
651
+ "Status": "SeedGene"
652
+ },
653
+ {
654
+ "Gene": "TP53",
655
+ "Rank": "94",
656
+ "Gene ID": "TP53",
657
+ "Score": "0.325612",
658
+ "Status": "Predicted"
659
+ },
660
+ {
661
+ "Gene": "ATP6V0A2",
662
+ "Rank": "95",
663
+ "Gene ID": "ATP6V0A2",
664
+ "Score": "0.324432",
665
+ "Status": "SeedGene"
666
+ },
667
+ {
668
+ "Gene": "CSNK2A1",
669
+ "Rank": "96",
670
+ "Gene ID": "CSNK2A1",
671
+ "Score": "0.323602",
672
+ "Status": "SeedGene"
673
+ },
674
+ {
675
+ "Gene": "ATP10A",
676
+ "Rank": "97",
677
+ "Gene ID": "ATP10A",
678
+ "Score": "0.322522",
679
+ "Status": "SeedGene"
680
+ },
681
+ {
682
+ "Gene": "FLII",
683
+ "Rank": "98",
684
+ "Gene ID": "FLII",
685
+ "Score": "0.321937",
686
+ "Status": "SeedGene"
687
+ },
688
+ {
689
+ "Gene": "HOXA1",
690
+ "Rank": "99",
691
+ "Gene ID": "HOXA1",
692
+ "Score": "0.320867",
693
+ "Status": "SeedGene"
694
+ },
695
+ {
696
+ "Gene": "DYNC1I2",
697
+ "Rank": "100",
698
+ "Gene ID": "DYNC1I2",
699
+ "Score": "0.31663",
700
+ "Status": "SeedGene"
701
+ },
702
+ {
703
+ "Gene": "STAG2",
704
+ "Rank": "101",
705
+ "Gene ID": "STAG2",
706
+ "Score": "0.316288",
707
+ "Status": "SeedGene"
708
+ },
709
+ {
710
+ "Gene": "PRKACA",
711
+ "Rank": "102",
712
+ "Gene ID": "PRKACA",
713
+ "Score": "0.315459",
714
+ "Status": "Predicted"
715
+ },
716
+ {
717
+ "Gene": "DSE",
718
+ "Rank": "103",
719
+ "Gene ID": "DSE",
720
+ "Score": "0.314914",
721
+ "Status": "SeedGene"
722
+ },
723
+ {
724
+ "Gene": "UBB",
725
+ "Rank": "104",
726
+ "Gene ID": "UBB",
727
+ "Score": "0.314338",
728
+ "Status": "SeedGene"
729
+ },
730
+ {
731
+ "Gene": "MYC",
732
+ "Rank": "105",
733
+ "Gene ID": "MYC",
734
+ "Score": "0.313159",
735
+ "Status": "Predicted"
736
+ },
737
+ {
738
+ "Gene": "CLIP2",
739
+ "Rank": "106",
740
+ "Gene ID": "CLIP2",
741
+ "Score": "0.313013",
742
+ "Status": "SeedGene"
743
+ },
744
+ {
745
+ "Gene": "ACTG1",
746
+ "Rank": "107",
747
+ "Gene ID": "ACTG1",
748
+ "Score": "0.312801",
749
+ "Status": "SeedGene"
750
+ },
751
+ {
752
+ "Gene": "ASXL1",
753
+ "Rank": "108",
754
+ "Gene ID": "ASXL1",
755
+ "Score": "0.310322",
756
+ "Status": "SeedGene"
757
+ },
758
+ {
759
+ "Gene": "TBX1",
760
+ "Rank": "109",
761
+ "Gene ID": "TBX1",
762
+ "Score": "0.307836",
763
+ "Status": "SeedGene"
764
+ },
765
+ {
766
+ "Gene": "RPS27A",
767
+ "Rank": "110",
768
+ "Gene ID": "RPS27A",
769
+ "Score": "0.307607",
770
+ "Status": "Predicted"
771
+ },
772
+ {
773
+ "Gene": "UBA52",
774
+ "Rank": "111",
775
+ "Gene ID": "UBA52",
776
+ "Score": "0.307082",
777
+ "Status": "Predicted"
778
+ },
779
+ {
780
+ "Gene": "ADAMTSL2",
781
+ "Rank": "112",
782
+ "Gene ID": "ADAMTSL2",
783
+ "Score": "0.306543",
784
+ "Status": "SeedGene"
785
+ },
786
+ {
787
+ "Gene": "IGF1R",
788
+ "Rank": "113",
789
+ "Gene ID": "IGF1R",
790
+ "Score": "0.305353",
791
+ "Status": "SeedGene"
792
+ },
793
+ {
794
+ "Gene": "ITPR1",
795
+ "Rank": "114",
796
+ "Gene ID": "ITPR1",
797
+ "Score": "0.305138",
798
+ "Status": "SeedGene"
799
+ },
800
+ {
801
+ "Gene": "CALM1",
802
+ "Rank": "115",
803
+ "Gene ID": "CALM1",
804
+ "Score": "0.30299",
805
+ "Status": "Predicted"
806
+ },
807
+ {
808
+ "Gene": "PTPN11",
809
+ "Rank": "116",
810
+ "Gene ID": "PTPN11",
811
+ "Score": "0.302727",
812
+ "Status": "SeedGene"
813
+ }
814
+ ]