pheval-exomiser 0.3.1__py3-none-any.whl → 0.3.3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- pheval_exomiser/post_process/post_process_results_format.py +1 -1
- {pheval_exomiser-0.3.1.dist-info → pheval_exomiser-0.3.3.dist-info}/METADATA +2 -2
- {pheval_exomiser-0.3.1.dist-info → pheval_exomiser-0.3.3.dist-info}/RECORD +5 -5
- {pheval_exomiser-0.3.1.dist-info → pheval_exomiser-0.3.3.dist-info}/WHEEL +1 -1
- {pheval_exomiser-0.3.1.dist-info → pheval_exomiser-0.3.3.dist-info}/entry_points.txt +0 -0
|
@@ -136,7 +136,7 @@ def create_standardised_results(
|
|
|
136
136
|
):
|
|
137
137
|
sort_order = SortOrder.ASCENDING if sort_order.lower() == "ascending" else SortOrder.DESCENDING
|
|
138
138
|
for exomiser_json_result_path in files_with_suffix(result_dir, ".json"):
|
|
139
|
-
exomiser_json_result = pl.read_json(exomiser_json_result_path)
|
|
139
|
+
exomiser_json_result = pl.read_json(exomiser_json_result_path, infer_schema_length=None)
|
|
140
140
|
if gene_analysis:
|
|
141
141
|
gene_results = extract_gene_results_from_json(exomiser_json_result, score_name)
|
|
142
142
|
generate_gene_result(
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.3
|
|
2
2
|
Name: pheval_exomiser
|
|
3
|
-
Version: 0.3.
|
|
3
|
+
Version: 0.3.3
|
|
4
4
|
Summary:
|
|
5
5
|
Author: Yasemin Bridges
|
|
6
6
|
Author-email: y.bridges@qmul.ac.uk
|
|
@@ -16,7 +16,7 @@ Requires-Dist: google (>=3.0.0,<4.0.0)
|
|
|
16
16
|
Requires-Dist: numpy (<2)
|
|
17
17
|
Requires-Dist: oaklib (>=0.5.12,<0.6.0)
|
|
18
18
|
Requires-Dist: phenopackets (>=2.0.2,<3.0.0)
|
|
19
|
-
Requires-Dist: pheval (>=0.
|
|
19
|
+
Requires-Dist: pheval (>=0.6.1,<0.7.0)
|
|
20
20
|
Requires-Dist: pyaml (>=21.10.1,<22.0.0)
|
|
21
21
|
Requires-Dist: pydantic (>=2.7.1,<3.0.0)
|
|
22
22
|
Description-Content-Type: text/markdown
|
|
@@ -3,7 +3,7 @@ pheval_exomiser/cli.py,sha256=0SR1-L2sREEkFRfUPwYwkbSaBsz_L_Sxq1S4c9LQLJg,350
|
|
|
3
3
|
pheval_exomiser/constants.py,sha256=o_pLWF8kX74BqyTsAZa7twwSKzedLnpupCI90k_bMqY,517
|
|
4
4
|
pheval_exomiser/post_process/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
|
5
5
|
pheval_exomiser/post_process/post_process.py,sha256=2vkwe60Ptf7UuPCR2ShcI80-kn-1WaPDa74cCBTUKF0,968
|
|
6
|
-
pheval_exomiser/post_process/post_process_results_format.py,sha256=
|
|
6
|
+
pheval_exomiser/post_process/post_process_results_format.py,sha256=8fmiPy4xJjhe6ajTlJEYx2na0EeJftkTuYQCzv5uIJk,8458
|
|
7
7
|
pheval_exomiser/prepare/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
|
8
8
|
pheval_exomiser/prepare/create_batch_commands.py,sha256=R06cn1c5pf_agUQfrFUQ2KEo8il0Z4fJntS2HKYCQXw,17410
|
|
9
9
|
pheval_exomiser/prepare/tool_specific_configuration_options.py,sha256=4gedZ9iadRXK6tF9P-ju-dhj8-F2-fhrXVhfYIsAxFQ,2922
|
|
@@ -11,7 +11,7 @@ pheval_exomiser/prepare/write_application_properties.py,sha256=KmG7GvkQo8AhnhRyq
|
|
|
11
11
|
pheval_exomiser/run/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
|
12
12
|
pheval_exomiser/run/run.py,sha256=bK_gL52zRl71Lxe-i-P6L4-dMstxFAG6SVNPO6G823o,7109
|
|
13
13
|
pheval_exomiser/runner.py,sha256=3-0kec2yzQoZNpqZXSBIWBD1QR24s_BmHGCLXmP4fos,2620
|
|
14
|
-
pheval_exomiser-0.3.
|
|
15
|
-
pheval_exomiser-0.3.
|
|
16
|
-
pheval_exomiser-0.3.
|
|
17
|
-
pheval_exomiser-0.3.
|
|
14
|
+
pheval_exomiser-0.3.3.dist-info/METADATA,sha256=v1v1TJ5fubcyQiO5sWNGGKtN2_9Gl5S_bACoQUmhmb8,7641
|
|
15
|
+
pheval_exomiser-0.3.3.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
|
|
16
|
+
pheval_exomiser-0.3.3.dist-info/entry_points.txt,sha256=lbZMu-x7ns8UrFveWSqEQ1UB5l33TbRMomqBUyGYIwI,131
|
|
17
|
+
pheval_exomiser-0.3.3.dist-info/RECORD,,
|
|
File without changes
|