pheval-exomiser 0.2.1__py3-none-any.whl → 0.2.2__py3-none-any.whl

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Files changed (5) hide show
  1. pheval_exomiser/prepare/create_batch_commands.py +4 -2
  2. {pheval_exomiser-0.2.1.dist-info → pheval_exomiser-0.2.2.dist-info}/METADATA +1 -1
  3. {pheval_exomiser-0.2.1.dist-info → pheval_exomiser-0.2.2.dist-info}/RECORD +5 -5
  4. {pheval_exomiser-0.2.1.dist-info → pheval_exomiser-0.2.2.dist-info}/WHEEL +0 -0
  5. {pheval_exomiser-0.2.1.dist-info → pheval_exomiser-0.2.2.dist-info}/entry_points.txt +0 -0
pheval_exomiser/prepare/create_batch_commands.py CHANGED
@@ -7,7 +7,7 @@ from typing import Optional
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  import click
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  from phenopackets import Family, Phenopacket
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  from pheval.prepare.custom_exceptions import MutuallyExclusiveOptionError
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- from pheval.utils.file_utils import all_files, files_with_suffix, obtain_closest_file_name
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+ from pheval.utils.file_utils import all_files, files_with_suffix
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  from pheval.utils.phenopacket_utils import PhenopacketUtil, phenopacket_reader
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  from pheval_exomiser.constants import (
@@ -69,7 +69,9 @@ class CommandCreator:
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  return (
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  self.output_options_file
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  if self.output_options_dir_files is None
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- else obtain_closest_file_name(self.phenopacket_path, self.output_options_dir_files)
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+ else self.output_options_dir_files[0].parent.joinpath(
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+ self.phenopacket_path.stem + "-output_options.yml"
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+ )
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  )
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  def add_phenotype_only_arguments(self) -> ExomiserCommandLineArguments:
{pheval_exomiser-0.2.1.dist-info → pheval_exomiser-0.2.2.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: pheval_exomiser
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- Version: 0.2.1
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+ Version: 0.2.2
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  Summary:
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  Author: Yasemin Bridges
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  Author-email: y.bridges@qmul.ac.uk
{pheval_exomiser-0.2.1.dist-info → pheval_exomiser-0.2.2.dist-info}/RECORD RENAMED
@@ -5,14 +5,14 @@ pheval_exomiser/post_process/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NM
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  pheval_exomiser/post_process/post_process.py,sha256=ZLIGPeADGZn08jFc152QraiJnYSADlL35GOwxkCQDwA,901
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  pheval_exomiser/post_process/post_process_results_format.py,sha256=WVtCQv5uiFk-6xL6zKsB0VWR2L52kCji_1fsXLitX3o,12112
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  pheval_exomiser/prepare/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- pheval_exomiser/prepare/create_batch_commands.py,sha256=tp5edNdpIQWp_XBTSNNhUtsA6EZvKOgu1FiDTmhWgiU,16190
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+ pheval_exomiser/prepare/create_batch_commands.py,sha256=G2VJ6xPgajYcNovVO1iC2PKePbU97-BqjbBONiC-hy4,16224
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  pheval_exomiser/prepare/tool_specific_configuration_options.py,sha256=i4aXdEVfAnA6uQD4ZOk_OO4nXAVIFQ1nN_aVul56DZg,2661
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  pheval_exomiser/prepare/write_application_properties.py,sha256=KmG7GvkQo8AhnhRyqohTFvqjfhEhbcs78UYYoigxJ3w,8933
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  pheval_exomiser/prepare/yaml_to_family_phenopacket.py,sha256=Hz77dHpVaRMV1fQWKmOCqCKJfmk_hdpZh_6o7hq9Sec,14452
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  pheval_exomiser/run/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  pheval_exomiser/run/run.py,sha256=6RokrunCoouhP_c4xpGR3EDzK6nxx_iOgyG3q1PYZmk,6892
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  pheval_exomiser/runner.py,sha256=LaWhC0F9LoPvP0Ie1sG2GkC8EG-tWjBBY_tFYmx6dxA,2548
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- pheval_exomiser-0.2.1.dist-info/METADATA,sha256=5_4_INuZMSIuqPRo_puvFn8rKd4YMbmtSNQm2qEF_H8,7059
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- pheval_exomiser-0.2.1.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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- pheval_exomiser-0.2.1.dist-info/entry_points.txt,sha256=lbZMu-x7ns8UrFveWSqEQ1UB5l33TbRMomqBUyGYIwI,131
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- pheval_exomiser-0.2.1.dist-info/RECORD,,
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+ pheval_exomiser-0.2.2.dist-info/METADATA,sha256=rdejFLD-k0Ngc8lEtSCrU-QSoLkKiI7pGroWcat8rfA,7059
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+ pheval_exomiser-0.2.2.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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+ pheval_exomiser-0.2.2.dist-info/entry_points.txt,sha256=lbZMu-x7ns8UrFveWSqEQ1UB5l33TbRMomqBUyGYIwI,131
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+ pheval_exomiser-0.2.2.dist-info/RECORD,,