phenostore-sdk-python 0.1.1__py3-none-any.whl

phenostore/gen/api/system/get_health.py

@@ -0,0 +1,128 @@
+from http import HTTPStatus
+from typing import Any
+
+import httpx
+
+from ... import errors
+from ...client import AuthenticatedClient, Client
+from ...models.health_response import HealthResponse
+from ...types import Response
+
+
+def _get_kwargs() -> dict[str, Any]:
+
+    _kwargs: dict[str, Any] = {
+        "method": "get",
+        "url": "/health",
+    }
+
+    return _kwargs
+
+
+def _parse_response(
+    *, client: AuthenticatedClient | Client, response: httpx.Response
+) -> HealthResponse | None:
+    if response.status_code == 200:
+        response_200 = HealthResponse.from_dict(response.json())
+
+        return response_200
+
+    if client.raise_on_unexpected_status:
+        raise errors.UnexpectedStatus(response.status_code, response.content)
+    else:
+        return None
+
+
+def _build_response(
+    *, client: AuthenticatedClient | Client, response: httpx.Response
+) -> Response[HealthResponse]:
+    return Response(
+        status_code=HTTPStatus(response.status_code),
+        content=response.content,
+        headers=response.headers,
+        parsed=_parse_response(client=client, response=response),
+    )
+
+
+def sync_detailed(
+    *,
+    client: AuthenticatedClient | Client,
+) -> Response[HealthResponse]:
+    """Health check
+
+    Raises:
+        errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True.
+        httpx.TimeoutException: If the request takes longer than Client.timeout.
+
+    Returns:
+        Response[HealthResponse]
+    """
+
+    kwargs = _get_kwargs()
+
+    response = client.get_httpx_client().request(
+        **kwargs,
+    )
+
+    return _build_response(client=client, response=response)
+
+
+def sync(
+    *,
+    client: AuthenticatedClient | Client,
+) -> HealthResponse | None:
+    """Health check
+
+    Raises:
+        errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True.
+        httpx.TimeoutException: If the request takes longer than Client.timeout.
+
+    Returns:
+        HealthResponse
+    """
+
+    return sync_detailed(
+        client=client,
+    ).parsed
+
+
+async def asyncio_detailed(
+    *,
+    client: AuthenticatedClient | Client,
+) -> Response[HealthResponse]:
+    """Health check
+
+    Raises:
+        errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True.
+        httpx.TimeoutException: If the request takes longer than Client.timeout.
+
+    Returns:
+        Response[HealthResponse]
+    """
+
+    kwargs = _get_kwargs()
+
+    response = await client.get_async_httpx_client().request(**kwargs)
+
+    return _build_response(client=client, response=response)
+
+
+async def asyncio(
+    *,
+    client: AuthenticatedClient | Client,
+) -> HealthResponse | None:
+    """Health check
+
+    Raises:
+        errors.UnexpectedStatus: If the server returns an undocumented status code and Client.raise_on_unexpected_status is True.
+        httpx.TimeoutException: If the request takes longer than Client.timeout.
+
+    Returns:
+        HealthResponse
+    """
+
+    return (
+        await asyncio_detailed(
+            client=client,
+        )
+    ).parsed

phenostore/gen/client.py

@@ -0,0 +1,280 @@
+import ssl
+from typing import Any, Self
+
+import httpx
+from attrs import define, evolve, field
+
+
+@define
+class Client:
+    """A class for keeping track of data related to the API
+
+    The following are accepted as keyword arguments and will be used to construct httpx Clients internally:
+
+        ``base_url``: The base URL for the API, all requests are made to a relative path to this URL
+
+        ``cookies``: A dictionary of cookies to be sent with every request
+
+        ``headers``: A dictionary of headers to be sent with every request
+
+        ``timeout``: The maximum amount of a time a request can take. API functions will raise
+        httpx.TimeoutException if this is exceeded.
+
+        ``verify_ssl``: Whether or not to verify the SSL certificate of the API server. This should be True in production,
+        but can be set to False for testing purposes.
+
+        ``follow_redirects``: Whether or not to follow redirects. Default value is False.
+
+        ``httpx_args``: A dictionary of additional arguments to be passed to the ``httpx.Client`` and ``httpx.AsyncClient`` constructor.
+
+
+    Attributes:
+        raise_on_unexpected_status: Whether or not to raise an errors.UnexpectedStatus if the API returns a
+            status code that was not documented in the source OpenAPI document. Can also be provided as a keyword
+            argument to the constructor.
+    """
+
+    raise_on_unexpected_status: bool = field(default=False, kw_only=True)
+    _base_url: str = field(alias="base_url")
+    _cookies: dict[str, str] = field(factory=dict, kw_only=True, alias="cookies")
+    _headers: dict[str, str] = field(factory=dict, kw_only=True, alias="headers")
+    _timeout: httpx.Timeout | None = field(default=None, kw_only=True, alias="timeout")
+    _verify_ssl: str | bool | ssl.SSLContext = field(
+        default=True, kw_only=True, alias="verify_ssl"
+    )
+    _follow_redirects: bool = field(
+        default=False, kw_only=True, alias="follow_redirects"
+    )
+    _httpx_args: dict[str, Any] = field(factory=dict, kw_only=True, alias="httpx_args")
+    _client: httpx.Client | None = field(default=None, init=False)
+    _async_client: httpx.AsyncClient | None = field(default=None, init=False)
+
+    def with_headers(self, headers: dict[str, str]) -> "Client":
+        """Get a new client matching this one with additional headers"""
+        if self._client is not None:
+            self._client.headers.update(headers)
+        if self._async_client is not None:
+            self._async_client.headers.update(headers)
+        return evolve(self, headers={**self._headers, **headers})
+
+    def with_cookies(self, cookies: dict[str, str]) -> "Client":
+        """Get a new client matching this one with additional cookies"""
+        if self._client is not None:
+            self._client.cookies.update(cookies)
+        if self._async_client is not None:
+            self._async_client.cookies.update(cookies)
+        return evolve(self, cookies={**self._cookies, **cookies})
+
+    def with_timeout(self, timeout: httpx.Timeout) -> "Client":
+        """Get a new client matching this one with a new timeout configuration"""
+        if self._client is not None:
+            self._client.timeout = timeout
+        if self._async_client is not None:
+            self._async_client.timeout = timeout
+        return evolve(self, timeout=timeout)
+
+    def set_httpx_client(self, client: httpx.Client) -> Self:
+        """Manually set the underlying httpx.Client
+
+        **NOTE**: This will override any other settings on the client, including cookies, headers, and timeout.
+        """
+        self._client = client
+        return self
+
+    def get_httpx_client(self) -> httpx.Client:
+        """Get the underlying httpx.Client, constructing a new one if not previously set"""
+        if self._client is None:
+            self._client = httpx.Client(
+                base_url=self._base_url,
+                cookies=self._cookies,
+                headers=self._headers,
+                timeout=self._timeout,
+                verify=self._verify_ssl,
+                follow_redirects=self._follow_redirects,
+                **self._httpx_args,
+            )
+        return self._client
+
+    def __enter__(self) -> Self:
+        """Enter a context manager for self.client—you cannot enter twice (see httpx docs)"""
+        self.get_httpx_client().__enter__()
+        return self
+
+    def __exit__(self, *args: Any, **kwargs: Any) -> None:
+        """Exit a context manager for internal httpx.Client (see httpx docs)"""
+        self.get_httpx_client().__exit__(*args, **kwargs)
+
+    def set_async_httpx_client(self, async_client: httpx.AsyncClient) -> Self:
+        """Manually set the underlying httpx.AsyncClient
+
+        **NOTE**: This will override any other settings on the client, including cookies, headers, and timeout.
+        """
+        self._async_client = async_client
+        return self
+
+    def get_async_httpx_client(self) -> httpx.AsyncClient:
+        """Get the underlying httpx.AsyncClient, constructing a new one if not previously set"""
+        if self._async_client is None:
+            self._async_client = httpx.AsyncClient(
+                base_url=self._base_url,
+                cookies=self._cookies,
+                headers=self._headers,
+                timeout=self._timeout,
+                verify=self._verify_ssl,
+                follow_redirects=self._follow_redirects,
+                **self._httpx_args,
+            )
+        return self._async_client
+
+    async def __aenter__(self) -> Self:
+        """Enter a context manager for underlying httpx.AsyncClient—you cannot enter twice (see httpx docs)"""
+        await self.get_async_httpx_client().__aenter__()
+        return self
+
+    async def __aexit__(self, *args: Any, **kwargs: Any) -> None:
+        """Exit a context manager for underlying httpx.AsyncClient (see httpx docs)"""
+        await self.get_async_httpx_client().__aexit__(*args, **kwargs)
+
+
+@define
+class AuthenticatedClient:
+    """A Client which has been authenticated for use on secured endpoints
+
+    The following are accepted as keyword arguments and will be used to construct httpx Clients internally:
+
+        ``base_url``: The base URL for the API, all requests are made to a relative path to this URL
+
+        ``cookies``: A dictionary of cookies to be sent with every request
+
+        ``headers``: A dictionary of headers to be sent with every request
+
+        ``timeout``: The maximum amount of a time a request can take. API functions will raise
+        httpx.TimeoutException if this is exceeded.
+
+        ``verify_ssl``: Whether or not to verify the SSL certificate of the API server. This should be True in production,
+        but can be set to False for testing purposes.
+
+        ``follow_redirects``: Whether or not to follow redirects. Default value is False.
+
+        ``httpx_args``: A dictionary of additional arguments to be passed to the ``httpx.Client`` and ``httpx.AsyncClient`` constructor.
+
+
+    Attributes:
+        raise_on_unexpected_status: Whether or not to raise an errors.UnexpectedStatus if the API returns a
+            status code that was not documented in the source OpenAPI document. Can also be provided as a keyword
+            argument to the constructor.
+        token: The token to use for authentication
+        prefix: The prefix to use for the Authorization header
+        auth_header_name: The name of the Authorization header
+    """
+
+    raise_on_unexpected_status: bool = field(default=False, kw_only=True)
+    _base_url: str = field(alias="base_url")
+    _cookies: dict[str, str] = field(factory=dict, kw_only=True, alias="cookies")
+    _headers: dict[str, str] = field(factory=dict, kw_only=True, alias="headers")
+    _timeout: httpx.Timeout | None = field(default=None, kw_only=True, alias="timeout")
+    _verify_ssl: str | bool | ssl.SSLContext = field(
+        default=True, kw_only=True, alias="verify_ssl"
+    )
+    _follow_redirects: bool = field(
+        default=False, kw_only=True, alias="follow_redirects"
+    )
+    _httpx_args: dict[str, Any] = field(factory=dict, kw_only=True, alias="httpx_args")
+    _client: httpx.Client | None = field(default=None, init=False)
+    _async_client: httpx.AsyncClient | None = field(default=None, init=False)
+
+    token: str
+    prefix: str = "Bearer"
+    auth_header_name: str = "Authorization"
+
+    def with_headers(self, headers: dict[str, str]) -> "AuthenticatedClient":
+        """Get a new client matching this one with additional headers"""
+        if self._client is not None:
+            self._client.headers.update(headers)
+        if self._async_client is not None:
+            self._async_client.headers.update(headers)
+        return evolve(self, headers={**self._headers, **headers})
+
+    def with_cookies(self, cookies: dict[str, str]) -> "AuthenticatedClient":
+        """Get a new client matching this one with additional cookies"""
+        if self._client is not None:
+            self._client.cookies.update(cookies)
+        if self._async_client is not None:
+            self._async_client.cookies.update(cookies)
+        return evolve(self, cookies={**self._cookies, **cookies})
+
+    def with_timeout(self, timeout: httpx.Timeout) -> "AuthenticatedClient":
+        """Get a new client matching this one with a new timeout configuration"""
+        if self._client is not None:
+            self._client.timeout = timeout
+        if self._async_client is not None:
+            self._async_client.timeout = timeout
+        return evolve(self, timeout=timeout)
+
+    def set_httpx_client(self, client: httpx.Client) -> Self:
+        """Manually set the underlying httpx.Client
+
+        **NOTE**: This will override any other settings on the client, including cookies, headers, and timeout.
+        """
+        self._client = client
+        return self
+
+    def get_httpx_client(self) -> httpx.Client:
+        """Get the underlying httpx.Client, constructing a new one if not previously set"""
+        if self._client is None:
+            self._headers[self.auth_header_name] = (
+                f"{self.prefix} {self.token}" if self.prefix else self.token
+            )
+            self._client = httpx.Client(
+                base_url=self._base_url,
+                cookies=self._cookies,
+                headers=self._headers,
+                timeout=self._timeout,
+                verify=self._verify_ssl,
+                follow_redirects=self._follow_redirects,
+                **self._httpx_args,
+            )
+        return self._client
+
+    def __enter__(self) -> Self:
+        """Enter a context manager for self.client—you cannot enter twice (see httpx docs)"""
+        self.get_httpx_client().__enter__()
+        return self
+
+    def __exit__(self, *args: Any, **kwargs: Any) -> None:
+        """Exit a context manager for internal httpx.Client (see httpx docs)"""
+        self.get_httpx_client().__exit__(*args, **kwargs)
+
+    def set_async_httpx_client(self, async_client: httpx.AsyncClient) -> Self:
+        """Manually set the underlying httpx.AsyncClient
+
+        **NOTE**: This will override any other settings on the client, including cookies, headers, and timeout.
+        """
+        self._async_client = async_client
+        return self
+
+    def get_async_httpx_client(self) -> httpx.AsyncClient:
+        """Get the underlying httpx.AsyncClient, constructing a new one if not previously set"""
+        if self._async_client is None:
+            self._headers[self.auth_header_name] = (
+                f"{self.prefix} {self.token}" if self.prefix else self.token
+            )
+            self._async_client = httpx.AsyncClient(
+                base_url=self._base_url,
+                cookies=self._cookies,
+                headers=self._headers,
+                timeout=self._timeout,
+                verify=self._verify_ssl,
+                follow_redirects=self._follow_redirects,
+                **self._httpx_args,
+            )
+        return self._async_client
+
+    async def __aenter__(self) -> Self:
+        """Enter a context manager for underlying httpx.AsyncClient—you cannot enter twice (see httpx docs)"""
+        await self.get_async_httpx_client().__aenter__()
+        return self
+
+    async def __aexit__(self, *args: Any, **kwargs: Any) -> None:
+        """Exit a context manager for underlying httpx.AsyncClient (see httpx docs)"""
+        await self.get_async_httpx_client().__aexit__(*args, **kwargs)

phenostore/gen/errors.py

@@ -0,0 +1,16 @@
+"""Contains shared errors types that can be raised from API functions"""
+
+
+class UnexpectedStatus(Exception):
+    """Raised by api functions when the response status an undocumented status and Client.raise_on_unexpected_status is True"""
+
+    def __init__(self, status_code: int, content: bytes):
+        self.status_code = status_code
+        self.content = content
+
+        super().__init__(
+            f"Unexpected status code: {status_code}\n\nResponse content:\n{content.decode(errors='ignore')}"
+        )
+
+
+__all__ = ["UnexpectedStatus"]

phenostore/gen/models/__init__.py

@@ -0,0 +1,71 @@
+"""Contains all the data models used in inputs/outputs"""
+
+from .bulk_operation_accepted import BulkOperationAccepted
+from .bulk_operation_accepted_status import BulkOperationAcceptedStatus
+from .bulk_operation_status import BulkOperationStatus
+from .bulk_operation_status_code import BulkOperationStatusCode
+from .bundle import Bundle
+from .bundle_entry import BundleEntry
+from .bundle_entry_request import BundleEntryRequest
+from .bundle_entry_response import BundleEntryResponse
+from .bundle_entry_search import BundleEntrySearch
+from .bundle_entry_search_mode import BundleEntrySearchMode
+from .bundle_link import BundleLink
+from .bundle_resource_type import BundleResourceType
+from .bundle_type import BundleType
+from .fhir_resource import FhirResource
+from .health_response import HealthResponse
+from .health_response_status import HealthResponseStatus
+from .issue_severity import IssueSeverity
+from .issue_token_body import IssueTokenBody
+from .issue_token_body_grant_type import IssueTokenBodyGrantType
+from .json_patch_item import JsonPatchItem
+from .json_patch_op import JsonPatchOp
+from .o_auth_error import OAuthError
+from .operation_outcome import OperationOutcome
+from .operation_outcome_issue import OperationOutcomeIssue
+from .operation_outcome_resource_type import OperationOutcomeResourceType
+from .post_docref_body import PostDocrefBody
+from .resource_type import ResourceType
+from .search_resources_post_body import SearchResourcesPostBody
+from .search_summary_mode import SearchSummaryMode
+from .search_total_mode import SearchTotalMode
+from .smart_configuration import SmartConfiguration
+from .token_response import TokenResponse
+from .token_response_token_type import TokenResponseTokenType
+
+__all__ = (
+    "BulkOperationAccepted",
+    "BulkOperationAcceptedStatus",
+    "BulkOperationStatus",
+    "BulkOperationStatusCode",
+    "Bundle",
+    "BundleEntry",
+    "BundleEntryRequest",
+    "BundleEntryResponse",
+    "BundleEntrySearch",
+    "BundleEntrySearchMode",
+    "BundleLink",
+    "BundleResourceType",
+    "BundleType",
+    "FhirResource",
+    "HealthResponse",
+    "HealthResponseStatus",
+    "IssueSeverity",
+    "IssueTokenBody",
+    "IssueTokenBodyGrantType",
+    "JsonPatchItem",
+    "JsonPatchOp",
+    "OAuthError",
+    "OperationOutcome",
+    "OperationOutcomeIssue",
+    "OperationOutcomeResourceType",
+    "PostDocrefBody",
+    "ResourceType",
+    "SearchResourcesPostBody",
+    "SearchSummaryMode",
+    "SearchTotalMode",
+    "SmartConfiguration",
+    "TokenResponse",
+    "TokenResponseTokenType",
+)

phenostore/gen/models/bulk_operation_accepted.py

@@ -0,0 +1,79 @@
+from __future__ import annotations
+
+from collections.abc import Mapping
+from typing import Any, TypeVar
+
+from attrs import define as _attrs_define
+from attrs import field as _attrs_field
+
+from ..models.bulk_operation_accepted_status import BulkOperationAcceptedStatus
+
+T = TypeVar("T", bound="BulkOperationAccepted")
+
+
+@_attrs_define
+class BulkOperationAccepted:
+    """
+    Attributes:
+        id (str):
+        status (BulkOperationAcceptedStatus):
+        total (int):
+    """
+
+    id: str
+    status: BulkOperationAcceptedStatus
+    total: int
+    additional_properties: dict[str, Any] = _attrs_field(init=False, factory=dict)
+
+    def to_dict(self) -> dict[str, Any]:
+        id = self.id
+
+        status = self.status.value
+
+        total = self.total
+
+        field_dict: dict[str, Any] = {}
+        field_dict.update(self.additional_properties)
+        field_dict.update(
+            {
+                "id": id,
+                "status": status,
+                "total": total,
+            }
+        )
+
+        return field_dict
+
+    @classmethod
+    def from_dict(cls: type[T], src_dict: Mapping[str, Any]) -> T:
+        d = dict(src_dict)
+        id = d.pop("id")
+
+        status = BulkOperationAcceptedStatus(d.pop("status"))
+
+        total = d.pop("total")
+
+        bulk_operation_accepted = cls(
+            id=id,
+            status=status,
+            total=total,
+        )
+
+        bulk_operation_accepted.additional_properties = d
+        return bulk_operation_accepted
+
+    @property
+    def additional_keys(self) -> list[str]:
+        return list(self.additional_properties.keys())
+
+    def __getitem__(self, key: str) -> Any:
+        return self.additional_properties[key]
+
+    def __setitem__(self, key: str, value: Any) -> None:
+        self.additional_properties[key] = value
+
+    def __delitem__(self, key: str) -> None:
+        del self.additional_properties[key]
+
+    def __contains__(self, key: str) -> bool:
+        return key in self.additional_properties

phenostore/gen/models/bulk_operation_accepted_status.py

@@ -0,0 +1,8 @@
+from enum import StrEnum
+
+
+class BulkOperationAcceptedStatus(StrEnum):
+    PENDING = "pending"
+
+    def __str__(self) -> str:
+        return str(self.value)