phenoml 0.0.2__py3-none-any.whl → 0.0.5__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Potentially problematic release.
This version of phenoml might be problematic. Click here for more details.
- phenoml/agent/__init__.py +6 -8
- phenoml/agent/client.py +45 -75
- phenoml/agent/raw_client.py +37 -77
- phenoml/agent/types/__init__.py +6 -8
- phenoml/agent/types/agent_create_request.py +53 -0
- phenoml/agent/types/agent_create_request_provider.py +5 -0
- phenoml/agent/types/agent_template.py +3 -6
- phenoml/agent/types/agent_template_provider.py +5 -0
- phenoml/client.py +6 -0
- phenoml/core/client_wrapper.py +2 -2
- phenoml/fhir/__init__.py +36 -0
- phenoml/fhir/client.py +970 -0
- phenoml/fhir/errors/__init__.py +10 -0
- phenoml/fhir/errors/bad_request_error.py +10 -0
- phenoml/fhir/errors/internal_server_error.py +10 -0
- phenoml/fhir/errors/not_found_error.py +10 -0
- phenoml/fhir/errors/unauthorized_error.py +10 -0
- phenoml/fhir/raw_client.py +1385 -0
- phenoml/fhir/types/__init__.py +29 -0
- phenoml/{agent/types/chat_fhir_client_config.py → fhir/types/error_response.py} +11 -6
- phenoml/fhir/types/fhir_bundle.py +43 -0
- phenoml/fhir/types/fhir_bundle_entry_item.py +34 -0
- phenoml/{agent/types/agent_fhir_config.py → fhir/types/fhir_bundle_entry_item_request.py} +5 -11
- phenoml/fhir/types/fhir_bundle_entry_item_request_method.py +5 -0
- phenoml/fhir/types/fhir_bundle_entry_item_response.py +24 -0
- phenoml/fhir/types/fhir_patch_request_body_item.py +36 -0
- phenoml/fhir/types/fhir_patch_request_body_item_op.py +7 -0
- phenoml/fhir/types/fhir_resource.py +40 -0
- phenoml/fhir/types/fhir_resource_meta.py +28 -0
- phenoml/fhir/types/fhir_search_response.py +8 -0
- phenoml/fhir_provider/__init__.py +43 -0
- phenoml/fhir_provider/client.py +731 -0
- phenoml/fhir_provider/errors/__init__.py +11 -0
- phenoml/fhir_provider/errors/bad_request_error.py +10 -0
- phenoml/fhir_provider/errors/forbidden_error.py +10 -0
- phenoml/fhir_provider/errors/internal_server_error.py +10 -0
- phenoml/fhir_provider/errors/not_found_error.py +10 -0
- phenoml/fhir_provider/errors/unauthorized_error.py +10 -0
- phenoml/fhir_provider/raw_client.py +1445 -0
- phenoml/fhir_provider/types/__init__.py +35 -0
- phenoml/fhir_provider/types/auth_method.py +7 -0
- phenoml/fhir_provider/types/fhir_provider_auth_config.py +53 -0
- phenoml/fhir_provider/types/fhir_provider_delete_response.py +20 -0
- phenoml/fhir_provider/types/fhir_provider_list_response.py +22 -0
- phenoml/fhir_provider/types/fhir_provider_remove_auth_config_response.py +22 -0
- phenoml/fhir_provider/types/fhir_provider_response.py +22 -0
- phenoml/fhir_provider/types/fhir_provider_set_active_auth_config_response.py +22 -0
- phenoml/fhir_provider/types/fhir_provider_template.py +66 -0
- phenoml/fhir_provider/types/fhir_query_response.py +27 -0
- phenoml/fhir_provider/types/fhir_query_response_data.py +5 -0
- phenoml/fhir_provider/types/json_web_key.py +51 -0
- phenoml/fhir_provider/types/provider.py +8 -0
- phenoml/fhir_provider/types/service_account_key.py +35 -0
- phenoml/fhir_provider/types/smart_configuration.py +46 -0
- phenoml/tools/__init__.py +0 -8
- phenoml/tools/client.py +24 -60
- phenoml/tools/raw_client.py +18 -67
- phenoml/tools/types/__init__.py +0 -8
- phenoml-0.0.5.dist-info/LICENSE +21 -0
- {phenoml-0.0.2.dist-info → phenoml-0.0.5.dist-info}/METADATA +1 -1
- {phenoml-0.0.2.dist-info → phenoml-0.0.5.dist-info}/RECORD +62 -22
- phenoml/agent/types/agent_provider.py +0 -7
- phenoml/agent/types/provider_type.py +0 -5
- phenoml/tools/types/cohort_request_provider.py +0 -5
- phenoml/tools/types/fhir_client_config.py +0 -31
- phenoml/tools/types/lang2fhir_and_create_request_provider.py +0 -7
- phenoml/tools/types/lang2fhir_and_search_request_provider.py +0 -7
- {phenoml-0.0.2.dist-info → phenoml-0.0.5.dist-info}/WHEEL +0 -0
|
@@ -0,0 +1,53 @@
|
|
|
1
|
+
# This file was auto-generated by Fern from our API Definition.
|
|
2
|
+
|
|
3
|
+
import typing
|
|
4
|
+
|
|
5
|
+
import pydantic
|
|
6
|
+
from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
|
|
7
|
+
from .agent_create_request_provider import AgentCreateRequestProvider
|
|
8
|
+
|
|
9
|
+
|
|
10
|
+
class AgentCreateRequest(UniversalBaseModel):
|
|
11
|
+
name: str = pydantic.Field()
|
|
12
|
+
"""
|
|
13
|
+
Agent name
|
|
14
|
+
"""
|
|
15
|
+
|
|
16
|
+
description: typing.Optional[str] = pydantic.Field(default=None)
|
|
17
|
+
"""
|
|
18
|
+
Agent description
|
|
19
|
+
"""
|
|
20
|
+
|
|
21
|
+
prompts: typing.List[str] = pydantic.Field()
|
|
22
|
+
"""
|
|
23
|
+
Array of prompt IDs to use for this agent
|
|
24
|
+
"""
|
|
25
|
+
|
|
26
|
+
tools: typing.Optional[typing.List[str]] = pydantic.Field(default=None)
|
|
27
|
+
"""
|
|
28
|
+
Array of MCP server tool IDs to use for this agent
|
|
29
|
+
"""
|
|
30
|
+
|
|
31
|
+
is_active: bool = pydantic.Field()
|
|
32
|
+
"""
|
|
33
|
+
Whether the agent is active
|
|
34
|
+
"""
|
|
35
|
+
|
|
36
|
+
tags: typing.Optional[typing.List[str]] = pydantic.Field(default=None)
|
|
37
|
+
"""
|
|
38
|
+
Tags for categorizing the agent
|
|
39
|
+
"""
|
|
40
|
+
|
|
41
|
+
provider: typing.Optional[AgentCreateRequestProvider] = pydantic.Field(default=None)
|
|
42
|
+
"""
|
|
43
|
+
FHIR provider ID(s) - must be valid UUIDs from existing FHIR providers
|
|
44
|
+
"""
|
|
45
|
+
|
|
46
|
+
if IS_PYDANTIC_V2:
|
|
47
|
+
model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True) # type: ignore # Pydantic v2
|
|
48
|
+
else:
|
|
49
|
+
|
|
50
|
+
class Config:
|
|
51
|
+
frozen = True
|
|
52
|
+
smart_union = True
|
|
53
|
+
extra = pydantic.Extra.allow
|
|
@@ -4,8 +4,7 @@ import typing
|
|
|
4
4
|
|
|
5
5
|
import pydantic
|
|
6
6
|
from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
|
|
7
|
-
from .
|
|
8
|
-
from .agent_provider import AgentProvider
|
|
7
|
+
from .agent_template_provider import AgentTemplateProvider
|
|
9
8
|
|
|
10
9
|
|
|
11
10
|
class AgentTemplate(UniversalBaseModel):
|
|
@@ -44,13 +43,11 @@ class AgentTemplate(UniversalBaseModel):
|
|
|
44
43
|
Tags for categorizing the agent
|
|
45
44
|
"""
|
|
46
45
|
|
|
47
|
-
provider: typing.Optional[
|
|
46
|
+
provider: typing.Optional[AgentTemplateProvider] = pydantic.Field(default=None)
|
|
48
47
|
"""
|
|
49
|
-
FHIR provider
|
|
48
|
+
FHIR provider ID(s) - must be valid UUIDs from existing FHIR providers
|
|
50
49
|
"""
|
|
51
50
|
|
|
52
|
-
meta: typing.Optional[AgentFhirConfig] = None
|
|
53
|
-
|
|
54
51
|
if IS_PYDANTIC_V2:
|
|
55
52
|
model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True) # type: ignore # Pydantic v2
|
|
56
53
|
else:
|
phenoml/client.py
CHANGED
|
@@ -9,6 +9,8 @@ from .cohort.client import AsyncCohortClient, CohortClient
|
|
|
9
9
|
from .construe.client import AsyncConstrueClient, ConstrueClient
|
|
10
10
|
from .core.client_wrapper import AsyncClientWrapper, SyncClientWrapper
|
|
11
11
|
from .environment import phenomlEnvironment
|
|
12
|
+
from .fhir.client import AsyncFhirClient, FhirClient
|
|
13
|
+
from .fhir_provider.client import AsyncFhirProviderClient, FhirProviderClient
|
|
12
14
|
from .lang2fhir.client import AsyncLang2FhirClient, Lang2FhirClient
|
|
13
15
|
from .tools.client import AsyncToolsClient, ToolsClient
|
|
14
16
|
|
|
@@ -82,6 +84,8 @@ class phenoml:
|
|
|
82
84
|
self.authtoken = AuthtokenClient(client_wrapper=self._client_wrapper)
|
|
83
85
|
self.cohort = CohortClient(client_wrapper=self._client_wrapper)
|
|
84
86
|
self.construe = ConstrueClient(client_wrapper=self._client_wrapper)
|
|
87
|
+
self.fhir = FhirClient(client_wrapper=self._client_wrapper)
|
|
88
|
+
self.fhir_provider = FhirProviderClient(client_wrapper=self._client_wrapper)
|
|
85
89
|
self.lang2fhir = Lang2FhirClient(client_wrapper=self._client_wrapper)
|
|
86
90
|
self.tools = ToolsClient(client_wrapper=self._client_wrapper)
|
|
87
91
|
|
|
@@ -155,6 +159,8 @@ class Asyncphenoml:
|
|
|
155
159
|
self.authtoken = AsyncAuthtokenClient(client_wrapper=self._client_wrapper)
|
|
156
160
|
self.cohort = AsyncCohortClient(client_wrapper=self._client_wrapper)
|
|
157
161
|
self.construe = AsyncConstrueClient(client_wrapper=self._client_wrapper)
|
|
162
|
+
self.fhir = AsyncFhirClient(client_wrapper=self._client_wrapper)
|
|
163
|
+
self.fhir_provider = AsyncFhirProviderClient(client_wrapper=self._client_wrapper)
|
|
158
164
|
self.lang2fhir = AsyncLang2FhirClient(client_wrapper=self._client_wrapper)
|
|
159
165
|
self.tools = AsyncToolsClient(client_wrapper=self._client_wrapper)
|
|
160
166
|
|
phenoml/core/client_wrapper.py
CHANGED
|
@@ -22,10 +22,10 @@ class BaseClientWrapper:
|
|
|
22
22
|
|
|
23
23
|
def get_headers(self) -> typing.Dict[str, str]:
|
|
24
24
|
headers: typing.Dict[str, str] = {
|
|
25
|
-
"User-Agent": "phenoml/0.0.
|
|
25
|
+
"User-Agent": "phenoml/0.0.5",
|
|
26
26
|
"X-Fern-Language": "Python",
|
|
27
27
|
"X-Fern-SDK-Name": "phenoml",
|
|
28
|
-
"X-Fern-SDK-Version": "0.0.
|
|
28
|
+
"X-Fern-SDK-Version": "0.0.5",
|
|
29
29
|
**(self.get_custom_headers() or {}),
|
|
30
30
|
}
|
|
31
31
|
headers["Authorization"] = f"Bearer {self._get_token()}"
|
phenoml/fhir/__init__.py
ADDED
|
@@ -0,0 +1,36 @@
|
|
|
1
|
+
# This file was auto-generated by Fern from our API Definition.
|
|
2
|
+
|
|
3
|
+
# isort: skip_file
|
|
4
|
+
|
|
5
|
+
from .types import (
|
|
6
|
+
ErrorResponse,
|
|
7
|
+
FhirBundle,
|
|
8
|
+
FhirBundleEntryItem,
|
|
9
|
+
FhirBundleEntryItemRequest,
|
|
10
|
+
FhirBundleEntryItemRequestMethod,
|
|
11
|
+
FhirBundleEntryItemResponse,
|
|
12
|
+
FhirPatchRequestBodyItem,
|
|
13
|
+
FhirPatchRequestBodyItemOp,
|
|
14
|
+
FhirResource,
|
|
15
|
+
FhirResourceMeta,
|
|
16
|
+
FhirSearchResponse,
|
|
17
|
+
)
|
|
18
|
+
from .errors import BadRequestError, InternalServerError, NotFoundError, UnauthorizedError
|
|
19
|
+
|
|
20
|
+
__all__ = [
|
|
21
|
+
"BadRequestError",
|
|
22
|
+
"ErrorResponse",
|
|
23
|
+
"FhirBundle",
|
|
24
|
+
"FhirBundleEntryItem",
|
|
25
|
+
"FhirBundleEntryItemRequest",
|
|
26
|
+
"FhirBundleEntryItemRequestMethod",
|
|
27
|
+
"FhirBundleEntryItemResponse",
|
|
28
|
+
"FhirPatchRequestBodyItem",
|
|
29
|
+
"FhirPatchRequestBodyItemOp",
|
|
30
|
+
"FhirResource",
|
|
31
|
+
"FhirResourceMeta",
|
|
32
|
+
"FhirSearchResponse",
|
|
33
|
+
"InternalServerError",
|
|
34
|
+
"NotFoundError",
|
|
35
|
+
"UnauthorizedError",
|
|
36
|
+
]
|