phenoml 0.0.1__py3-none-any.whl → 0.0.5__py3-none-any.whl

phenoml/fhir/types/__init__.py

@@ -0,0 +1,29 @@
+# This file was auto-generated by Fern from our API Definition.
+
+# isort: skip_file
+
+from .error_response import ErrorResponse
+from .fhir_bundle import FhirBundle
+from .fhir_bundle_entry_item import FhirBundleEntryItem
+from .fhir_bundle_entry_item_request import FhirBundleEntryItemRequest
+from .fhir_bundle_entry_item_request_method import FhirBundleEntryItemRequestMethod
+from .fhir_bundle_entry_item_response import FhirBundleEntryItemResponse
+from .fhir_patch_request_body_item import FhirPatchRequestBodyItem
+from .fhir_patch_request_body_item_op import FhirPatchRequestBodyItemOp
+from .fhir_resource import FhirResource
+from .fhir_resource_meta import FhirResourceMeta
+from .fhir_search_response import FhirSearchResponse
+
+__all__ = [
+    "ErrorResponse",
+    "FhirBundle",
+    "FhirBundleEntryItem",
+    "FhirBundleEntryItemRequest",
+    "FhirBundleEntryItemRequestMethod",
+    "FhirBundleEntryItemResponse",
+    "FhirPatchRequestBodyItem",
+    "FhirPatchRequestBodyItemOp",
+    "FhirResource",
+    "FhirResourceMeta",
+    "FhirSearchResponse",
+]

phenoml/{agent/types/chat_fhir_client_config.py → fhir/types/error_response.py}

@@ -6,19 +6,24 @@ import pydantic
 from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
 
 
-class ChatFhirClientConfig(UniversalBaseModel):
+class ErrorResponse(UniversalBaseModel):
     """
-    User-specific FHIR configuration overrides for chat requests
+    Standard error response structure
     """
 
-    on_behalf_of_email: typing.Optional[str] = pydantic.Field(default=None)
+    message: str = pydantic.Field()
     """
-    Override email for On-Behalf-Of requests (Medplum only)
+    Human-readable error message
     """
 
-    instance_name: typing.Optional[str] = pydantic.Field(default=None)
+    code: typing.Optional[int] = pydantic.Field(default=None)
     """
-    Override instance name for multi-instance providers
+    HTTP status code
+    """
+
+    data: typing.Optional[typing.Dict[str, typing.Optional[typing.Any]]] = pydantic.Field(default=None)
+    """
+    Additional error details
     """
 
     if IS_PYDANTIC_V2:

phenoml/fhir/types/fhir_bundle.py

@@ -0,0 +1,43 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+import typing_extensions
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+from ...core.serialization import FieldMetadata
+from .fhir_bundle_entry_item import FhirBundleEntryItem
+
+
+class FhirBundle(UniversalBaseModel):
+    """
+    Represents a FHIR Bundle response containing multiple resources or operation results.
+    Based on the FHIRBundle struct from io/fhir.go.
+    """
+
+    resource_type: typing_extensions.Annotated[typing.Literal["Bundle"], FieldMetadata(alias="resourceType")] = (
+        pydantic.Field(default="Bundle")
+    )
+    """
+    Always "Bundle" for bundle resources
+    """
+
+    total: typing.Optional[int] = pydantic.Field(default=None)
+    """
+    Total number of resources that match the search criteria.
+    Optional field as not all FHIR servers include it (e.g., Medplum).
+    """
+
+    entry: typing.List[FhirBundleEntryItem] = pydantic.Field()
+    """
+    Array of bundle entries containing resources or operation results
+    """
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/fhir/types/fhir_bundle_entry_item.py

@@ -0,0 +1,34 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+from .fhir_bundle_entry_item_request import FhirBundleEntryItemRequest
+from .fhir_bundle_entry_item_response import FhirBundleEntryItemResponse
+
+
+class FhirBundleEntryItem(UniversalBaseModel):
+    resource: typing.Optional[typing.Dict[str, typing.Optional[typing.Any]]] = pydantic.Field(default=None)
+    """
+    The FHIR resource contained in this entry
+    """
+
+    request: typing.Optional[FhirBundleEntryItemRequest] = pydantic.Field(default=None)
+    """
+    Request information for transaction/batch bundles
+    """
+
+    response: typing.Optional[FhirBundleEntryItemResponse] = pydantic.Field(default=None)
+    """
+    Response information for transaction/batch bundle responses
+    """
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/fhir/types/fhir_bundle_entry_item_request.py

@@ -0,0 +1,25 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+from .fhir_bundle_entry_item_request_method import FhirBundleEntryItemRequestMethod
+
+
+class FhirBundleEntryItemRequest(UniversalBaseModel):
+    """
+    Request information for transaction/batch bundles
+    """
+
+    method: typing.Optional[FhirBundleEntryItemRequestMethod] = None
+    url: typing.Optional[str] = None
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/fhir/types/fhir_bundle_entry_item_request_method.py

@@ -0,0 +1,5 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+FhirBundleEntryItemRequestMethod = typing.Union[typing.Literal["GET", "POST", "PUT", "PATCH", "DELETE"], typing.Any]

phenoml/fhir/types/fhir_bundle_entry_item_response.py

@@ -0,0 +1,24 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+
+
+class FhirBundleEntryItemResponse(UniversalBaseModel):
+    """
+    Response information for transaction/batch bundle responses
+    """
+
+    status: typing.Optional[str] = None
+    location: typing.Optional[str] = None
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/fhir/types/fhir_patch_request_body_item.py

@@ -0,0 +1,36 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+import typing_extensions
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+from ...core.serialization import FieldMetadata
+from .fhir_patch_request_body_item_op import FhirPatchRequestBodyItemOp
+
+
+class FhirPatchRequestBodyItem(UniversalBaseModel):
+    op: FhirPatchRequestBodyItemOp = pydantic.Field()
+    """
+    The operation to perform
+    """
+
+    path: str = pydantic.Field()
+    """
+    JSON Pointer to the target location
+    """
+
+    value: typing.Optional[typing.Optional[typing.Any]] = None
+    from_: typing_extensions.Annotated[typing.Optional[str], FieldMetadata(alias="from")] = pydantic.Field(default=None)
+    """
+    Source location for move and copy operations (JSON Pointer)
+    """
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/fhir/types/fhir_patch_request_body_item_op.py

@@ -0,0 +1,7 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+FhirPatchRequestBodyItemOp = typing.Union[
+    typing.Literal["add", "remove", "replace", "move", "copy", "test"], typing.Any
+]

phenoml/fhir/types/fhir_resource.py

@@ -0,0 +1,40 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+import typing_extensions
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+from ...core.serialization import FieldMetadata
+from .fhir_resource_meta import FhirResourceMeta
+
+
+class FhirResource(UniversalBaseModel):
+    """
+    A generic FHIR resource. All FHIR resources share common elements like resourceType and id,
+    but the specific structure depends on the resource type.
+    """
+
+    resource_type: typing_extensions.Annotated[str, FieldMetadata(alias="resourceType")] = pydantic.Field()
+    """
+    The type of FHIR resource (e.g., Patient, Observation, etc.)
+    """
+
+    id: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    Logical ID of the resource
+    """
+
+    meta: typing.Optional[FhirResourceMeta] = pydantic.Field(default=None)
+    """
+    Metadata about the resource
+    """
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/fhir/types/fhir_resource_meta.py

@@ -0,0 +1,28 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import datetime as dt
+import typing
+
+import pydantic
+import typing_extensions
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+from ...core.serialization import FieldMetadata
+
+
+class FhirResourceMeta(UniversalBaseModel):
+    """
+    Metadata about the resource
+    """
+
+    version_id: typing_extensions.Annotated[typing.Optional[str], FieldMetadata(alias="versionId")] = None
+    last_updated: typing_extensions.Annotated[typing.Optional[dt.datetime], FieldMetadata(alias="lastUpdated")] = None
+    profile: typing.Optional[typing.List[str]] = None
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/fhir/types/fhir_search_response.py

@@ -0,0 +1,8 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+from .fhir_bundle import FhirBundle
+from .fhir_resource import FhirResource
+
+FhirSearchResponse = typing.Union[FhirBundle, FhirResource]

phenoml/fhir_provider/__init__.py

@@ -0,0 +1,43 @@
+# This file was auto-generated by Fern from our API Definition.
+
+# isort: skip_file
+
+from .types import (
+    AuthMethod,
+    FhirProviderAuthConfig,
+    FhirProviderDeleteResponse,
+    FhirProviderListResponse,
+    FhirProviderRemoveAuthConfigResponse,
+    FhirProviderResponse,
+    FhirProviderSetActiveAuthConfigResponse,
+    FhirProviderTemplate,
+    FhirQueryResponse,
+    FhirQueryResponseData,
+    JsonWebKey,
+    Provider,
+    ServiceAccountKey,
+    SmartConfiguration,
+)
+from .errors import BadRequestError, ForbiddenError, InternalServerError, NotFoundError, UnauthorizedError
+
+__all__ = [
+    "AuthMethod",
+    "BadRequestError",
+    "FhirProviderAuthConfig",
+    "FhirProviderDeleteResponse",
+    "FhirProviderListResponse",
+    "FhirProviderRemoveAuthConfigResponse",
+    "FhirProviderResponse",
+    "FhirProviderSetActiveAuthConfigResponse",
+    "FhirProviderTemplate",
+    "FhirQueryResponse",
+    "FhirQueryResponseData",
+    "ForbiddenError",
+    "InternalServerError",
+    "JsonWebKey",
+    "NotFoundError",
+    "Provider",
+    "ServiceAccountKey",
+    "SmartConfiguration",
+    "UnauthorizedError",
+]