phenoml 0.0.17__py3-none-any.whl → 0.0.18__py3-none-any.whl

phenoml/construe/types/extract_request_config.py

@@ -16,7 +16,10 @@ class ExtractRequestConfig(UniversalBaseModel):
 
     max_codes_per_chunk: typing.Optional[int] = pydantic.Field(default=None)
     """
-    Maximum number of codes to extract per chunk
+    Maximum number of codes to extract per chunk. If not specified, uses system-specific defaults:
+    * SNOMED: 10
+    * LOINC, HPO, RXNORM: 20
+    * All other systems: 5
     """
 
     code_similarity_filter: typing.Optional[float] = pydantic.Field(default=None)
@@ -42,6 +45,11 @@ class ExtractRequestConfig(UniversalBaseModel):
     Whether to include ancestor/parent codes in the results
     """
 
+    include_invalid: typing.Optional[bool] = pydantic.Field(default=None)
+    """
+    Whether to include codes that failed validation in the results
+    """
+
     if IS_PYDANTIC_V2:
         model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
     else:

phenoml/construe/types/extracted_code_result.py

@@ -19,6 +19,11 @@ class ExtractedCodeResult(UniversalBaseModel):
     Short description of the code
     """
 
+    valid: bool = pydantic.Field()
+    """
+    Whether the code passed validation. Always true unless include_invalid is set to true, in which case invalid codes will have this set to false.
+    """
+
     long_description: typing_extensions.Annotated[typing.Optional[str], FieldMetadata(alias="longDescription")] = (
         pydantic.Field(default=None)
     )

phenoml/core/client_wrapper.py

@@ -22,10 +22,10 @@ class BaseClientWrapper:
 
     def get_headers(self) -> typing.Dict[str, str]:
         headers: typing.Dict[str, str] = {
-            "User-Agent": "phenoml/v0.0.17",
+            "User-Agent": "phenoml/v0.0.18",
             "X-Fern-Language": "Python",
             "X-Fern-SDK-Name": "phenoml",
-            "X-Fern-SDK-Version": "v0.0.17",
+            "X-Fern-SDK-Version": "v0.0.18",
             **(self.get_custom_headers() or {}),
         }
         headers["Authorization"] = f"Bearer {self._get_token()}"

{phenoml-0.0.17.dist-info → phenoml-0.0.18.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: phenoml
-Version: 0.0.17
+Version: 0.0.18
 Summary: 
 Requires-Python: >=3.8,<4.0
 Classifier: Intended Audience :: Developers

{phenoml-0.0.17.dist-info → phenoml-0.0.18.dist-info}/RECORD

@@ -70,15 +70,15 @@ phenoml/construe/raw_client.py,sha256=xXhtTmLzDELw9TEXWSKk9ZK2UXYNKMfp3IAk2EKxzl
 phenoml/construe/types/__init__.py,sha256=Id0OJ58ZEQX9Ut-7iMwWEv49MTJLTTmNPH9es1ya8Cw,900
 phenoml/construe/types/construe_upload_code_system_response.py,sha256=s0m5EHpkhkp7hYiC5zLZeIeqQ4mrwXlPI1Msihb-ZGo,566
 phenoml/construe/types/extract_codes_result.py,sha256=DbVDLWqtmt9TyD5MC0q8grgnNXPnXq4eJnLDinTe0uc,701
-phenoml/construe/types/extract_request_config.py,sha256=-N_yPxXcWeuFx2JNOJIGHjtyJNSFMOGslmLbjYxMh18,1831
+phenoml/construe/types/extract_request_config.py,sha256=2A22PNA1Hxq9qz1x89LvbySF-Hw8iB6oA2QqoSIrvg8,2112
 phenoml/construe/types/extract_request_config_chunking_method.py,sha256=AmVPPj0oT5r0pwWUoFxG_K8s5g8xaGYIRsPt3VvqSXQ,209
 phenoml/construe/types/extract_request_config_validation_method.py,sha256=6uUqKn8DXF34EDtNKPa6KLW07DsxgQF2aR5BGdG5Fd4,199
 phenoml/construe/types/extract_request_system.py,sha256=50qkxvinJKS5y1_glr-OFe5tQRyMWLYpeny1NZ9gFzw,1191
-phenoml/construe/types/extracted_code_result.py,sha256=LmhaQYFeLXBWR_NWcF1c-qt3OqwWQduefvInJRHcvio,1121
+phenoml/construe/types/extracted_code_result.py,sha256=3mIHO952KjbMRBY_YvwBt75XOjqdflg9Odc-xBbURac,1321
 phenoml/construe/types/upload_request_format.py,sha256=5mJhMM7R7hn6gGQNDJT9lxPDsRpUkRzqNxtRU0Nnlls,158
 phenoml/core/__init__.py,sha256=lTcqUPXcx4112yLDd70RAPeqq6tu3eFMe1pKOqkW9JQ,1562
 phenoml/core/api_error.py,sha256=44vPoTyWN59gonCIZMdzw7M1uspygiLnr3GNFOoVL2Q,614
-phenoml/core/client_wrapper.py,sha256=xvK9FUbhC6oFKkrRf4axrjXvG-E3uIorhHjeCScgKcg,2645
+phenoml/core/client_wrapper.py,sha256=z1oi8fHFvxZesnHRdmy1-aaGsidR3l0xTrlWWgY_50o,2645
 phenoml/core/datetime_utils.py,sha256=nBys2IsYrhPdszxGKCNRPSOCwa-5DWOHG95FB8G9PKo,1047
 phenoml/core/file.py,sha256=d4NNbX8XvXP32z8KpK2Xovv33nFfruIrpz0QWxlgpZk,2663
 phenoml/core/force_multipart.py,sha256=awxh5MtcRYe74ehY8U76jzv6fYM_w_D3Rur7KQQzSDk,429
@@ -245,7 +245,7 @@ phenoml/workflows/types/workflows_delete_response.py,sha256=izcubUOnSNOgThD9Ozo6
 phenoml/workflows/types/workflows_get_response.py,sha256=gfNyUs14JSynprRwT-fuq4IDsGrPZmUSsK3WmgqIEi8,891
 phenoml/workflows/types/workflows_update_response.py,sha256=FEvQpC9ZRk8dV1oaIAwV5bSDD2tkXZ5fG4mozRjibuQ,1046
 phenoml/wrapper_client.py,sha256=JYTdhXgju4tOsata06wQY_ZbMsuMj3qaxkgvDzpY068,5022
-phenoml-0.0.17.dist-info/LICENSE,sha256=Am1fNNveR2gcmOloSWQTsnUw2SQEF8HtowFqIvlagfk,1064
-phenoml-0.0.17.dist-info/METADATA,sha256=WVLi0HVa9_Ocp7VY6Gy0g_QcqCOffiKSlzwuFDceVno,5331
-phenoml-0.0.17.dist-info/WHEEL,sha256=Zb28QaM1gQi8f4VCBhsUklF61CTlNYfs9YAZn-TOGFk,88
-phenoml-0.0.17.dist-info/RECORD,,
+phenoml-0.0.18.dist-info/LICENSE,sha256=Am1fNNveR2gcmOloSWQTsnUw2SQEF8HtowFqIvlagfk,1064
+phenoml-0.0.18.dist-info/METADATA,sha256=Z1ieeoLMuZTCh90F_ExzmBFAU_0f9EJ74r7UOmrvfEE,5331
+phenoml-0.0.18.dist-info/WHEEL,sha256=Zb28QaM1gQi8f4VCBhsUklF61CTlNYfs9YAZn-TOGFk,88
+phenoml-0.0.18.dist-info/RECORD,,