phc-ingestion 1.0.3__py3-none-any.whl → 1.0.4__py3-none-any.whl

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Files changed (4) hide show
  1. ingestion/nextgen/util/manifest_helpers.py +3 -1
  2. {phc_ingestion-1.0.3.dist-info → phc_ingestion-1.0.4.dist-info}/METADATA +1 -1
  3. {phc_ingestion-1.0.3.dist-info → phc_ingestion-1.0.4.dist-info}/RECORD +4 -4
  4. {phc_ingestion-1.0.3.dist-info → phc_ingestion-1.0.4.dist-info}/WHEEL +0 -0
ingestion/nextgen/util/manifest_helpers.py CHANGED
@@ -25,7 +25,9 @@ def parse_patient_name(line: str) -> str:
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  def parse_sample_number(line: str) -> str:
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- return parse_pattern(r"^.*Specimen #: (\d*-?R?) .*$", line, "sample number")
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+ return parse_pattern(
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+ r"^.*Specimen #: (\d+(?:-[A-Za-z0-9]+)?(?:-?R)?) .*$", line, "sample number"
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+ )
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  def parse_body_site(line: str) -> str:
{phc_ingestion-1.0.3.dist-info → phc_ingestion-1.0.4.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: phc-ingestion
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- Version: 1.0.3
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+ Version: 1.0.4
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  Summary: Functions for LifeOmic PHC genomic ingestions
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  License: MIT
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  Author-email: LifeOmic Development <development@lifeomic.com>
{phc_ingestion-1.0.3.dist-info → phc_ingestion-1.0.4.dist-info}/RECORD RENAMED
@@ -37,7 +37,7 @@ ingestion/nextgen/__init__.py,sha256=7LQ-h_Bvc5P1QcHMdzsqi1Qm4fTJn04-ozar2ty9wSc
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  ingestion/nextgen/process.py,sha256=5Z0RfclwTAYZruGDiLPutjPCYFh1DJpoWY9dnttghT4,3993
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  ingestion/nextgen/util/alteration_table.py,sha256=JTWBL1Fqj_pGsH5vwuVEnCUJle2wOBk6VYImHYCF9vg,6129
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  ingestion/nextgen/util/interpretation.py,sha256=a_B8jVjJXjkrN0hNzB260WNlZdY-BkL26LyLZcYP20A,950
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- ingestion/nextgen/util/manifest_helpers.py,sha256=zucNhbSss6IuU-kf3tpVoSxV27iSNQohGSMUXQQePSc,2729
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+ ingestion/nextgen/util/manifest_helpers.py,sha256=Eo89CBRDrMGLIq2OBkKS9lH5yL4pgMUOysle1TL9qr8,2765
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  ingestion/nextgen/util/nextgen_specific_genes.py,sha256=1jFcqvtYAlJ7eBwOBm1UC2TzAbjHjdlvPBUzxr1G8dY,1206
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  ingestion/nextgen/util/pre_filter_somatic_vcf.py,sha256=mIaUihmGLbS38D4Gy_Qtf1lFAfW0A-LgAgQmsrEiI-M,3529
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  ingestion/nextgen/util/process_cnv.py,sha256=MIirc8e0k6lsaTZkRM3U3L3IvbrcHmKQ4xlIu585514,2430
@@ -63,6 +63,6 @@ ingestion/vcf_standardization/util/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQe
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  ingestion/vcf_standardization/util/af_helpers.py,sha256=dpTzoeIQVeBRt0ETF3a9rp5ojZqznHg4x_hCZ8OPcOg,1061
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  ingestion/vcf_standardization/util/dp_helpers.py,sha256=Nq8oLOLObu4_pv16qwwgpALRlUoJVCULrd9cFOD-eoI,823
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  ingestion/vcf_standardization/util/read_write.py,sha256=x3Pf6Dq8tmolblbCS5CrNmrcHS3FGfqBSFpFgvFGC4g,2526
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- phc_ingestion-1.0.3.dist-info/WHEEL,sha256=B19PGBCYhWaz2p_UjAoRVh767nYQfk14Sn4TpIZ-nfU,87
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- phc_ingestion-1.0.3.dist-info/METADATA,sha256=3B6vgXo5LbPEbaAxeCDBfhynbjPtpUd9KKSTpaO-S5Q,676
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- phc_ingestion-1.0.3.dist-info/RECORD,,
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+ phc_ingestion-1.0.4.dist-info/WHEEL,sha256=B19PGBCYhWaz2p_UjAoRVh767nYQfk14Sn4TpIZ-nfU,87
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+ phc_ingestion-1.0.4.dist-info/METADATA,sha256=_pBhlXnkSblAR6gqgXmPMq7FjvAZY_1y55rfdpB9rVQ,676
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+ phc_ingestion-1.0.4.dist-info/RECORD,,