phc-ingestion 0.9.0__py3-none-any.whl → 0.9.1__py3-none-any.whl

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Files changed (4) hide show
  1. ingestion/caris/util/specimen_details.py +3 -2
  2. {phc_ingestion-0.9.0.dist-info → phc_ingestion-0.9.1.dist-info}/METADATA +1 -1
  3. {phc_ingestion-0.9.0.dist-info → phc_ingestion-0.9.1.dist-info}/RECORD +4 -4
  4. {phc_ingestion-0.9.0.dist-info → phc_ingestion-0.9.1.dist-info}/WHEEL +0 -0
ingestion/caris/util/specimen_details.py CHANGED
@@ -9,7 +9,7 @@ class SpecimenDetails(TypedDict, total=False):
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  specimenCollectionDate: str
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  specimenSite: str
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  specimenType: str
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- specimenID: str
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+ specimenID: str | int
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  class ParsedSpecimenDetails(TypedDict):
@@ -26,12 +26,13 @@ def parse_specimen_details(specimen_details: list[SpecimenDetails]) -> ParsedSpe
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  specimen_type = specimen.get("specimenType")
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  if specimen_type and specimen_type not in specimen_types:
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  specimen_types.append(specimen_type)
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+ maybe_specimen_id = specimen_details[0].get("specimenID")
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  return {
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  "bodySite": specimen_details[0].get("specimenSite", ""),
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  "receivedDate": specimen_details[0].get("specimenReceivedDate", ""),
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  "collDate": specimen_details[0].get("specimenCollectionDate", ""),
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- "specimenId": specimen_details[0].get("specimenID"),
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+ "specimenId": str(maybe_specimen_id) if maybe_specimen_id else None,
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  "specimenTypes": specimen_types if specimen_types else None,
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  }
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{phc_ingestion-0.9.0.dist-info → phc_ingestion-0.9.1.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: phc-ingestion
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- Version: 0.9.0
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+ Version: 0.9.1
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  Summary: Functions for LifeOmic PHC genomic ingestions
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  License: MIT
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  Author-email: LifeOmic Development <development@lifeomic.com>
{phc_ingestion-0.9.0.dist-info → phc_ingestion-0.9.1.dist-info}/RECORD RENAMED
@@ -10,7 +10,7 @@ ingestion/caris/util/ihc.py,sha256=vegxudxHj7tLihrXGbEx_ptwkSsu3YCCB1nZVwoiYXg,1
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  ingestion/caris/util/interpretation.py,sha256=CghNurqeVA5VTBBorU8-ZTN-PVNPnR8wrmTwKCH3568,555
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  ingestion/caris/util/json.py,sha256=HBU3Tf-XSi9fGHANYUtD8maXNYqmmnpncGh0KCDaPEU,5018
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  ingestion/caris/util/metadata.py,sha256=a6NToMtGtIRrlMd3CQwq4IRjGGmIiBA9JFwsATjNEoQ,10287
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- ingestion/caris/util/specimen_details.py,sha256=5Tew0uhSa_SGBFEWjHp8wOKmQdeAYsY3-yTB-dEbtE4,2879
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+ ingestion/caris/util/specimen_details.py,sha256=wDTIelrGelAuSljmE6dAoJRjb9kwrlhmB2f1_vcCiUc,2963
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  ingestion/caris/util/structural.py,sha256=EUcMIea_WnafoVmFLIyEqlJ_HtYIj_g6qkekXa7QNQs,4628
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  ingestion/caris/util/tar.py,sha256=BGR_2vBbxyMgF-GzJ3SrihsPdOzII4SFVz9tvKV5vo0,482
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  ingestion/caris/util/tests.py,sha256=mcG3A8TW81_sn2Bfoa-Gd6Q1sR3_R4FX2BNskD4DkJk,372
@@ -54,6 +54,6 @@ ingestion/vcf_standardization/util/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQe
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  ingestion/vcf_standardization/util/af_helpers.py,sha256=dpTzoeIQVeBRt0ETF3a9rp5ojZqznHg4x_hCZ8OPcOg,1061
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  ingestion/vcf_standardization/util/dp_helpers.py,sha256=Nq8oLOLObu4_pv16qwwgpALRlUoJVCULrd9cFOD-eoI,823
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  ingestion/vcf_standardization/util/read_write.py,sha256=x3Pf6Dq8tmolblbCS5CrNmrcHS3FGfqBSFpFgvFGC4g,2526
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- phc_ingestion-0.9.0.dist-info/WHEEL,sha256=B19PGBCYhWaz2p_UjAoRVh767nYQfk14Sn4TpIZ-nfU,87
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- phc_ingestion-0.9.0.dist-info/METADATA,sha256=4sKbowdUIImMSp2a_3tm8WPyS7fq8hp-_96HRIZi_H0,572
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- phc_ingestion-0.9.0.dist-info/RECORD,,
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+ phc_ingestion-0.9.1.dist-info/WHEEL,sha256=B19PGBCYhWaz2p_UjAoRVh767nYQfk14Sn4TpIZ-nfU,87
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+ phc_ingestion-0.9.1.dist-info/METADATA,sha256=4V0DH1agvp00fsrJQxOwDVeTDVvDgtdE3TVPg2xdaYc,572
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+ phc_ingestion-0.9.1.dist-info/RECORD,,