phc-ingestion 0.8.40__py3-none-any.whl → 0.8.41__py3-none-any.whl

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Files changed (4) hide show
  1. ingestion/foundation/util/ga4gh.py +1 -1
  2. {phc_ingestion-0.8.40.dist-info → phc_ingestion-0.8.41.dist-info}/METADATA +1 -1
  3. {phc_ingestion-0.8.40.dist-info → phc_ingestion-0.8.41.dist-info}/RECORD +4 -4
  4. {phc_ingestion-0.8.40.dist-info → phc_ingestion-0.8.41.dist-info}/WHEEL +0 -0
ingestion/foundation/util/ga4gh.py CHANGED
@@ -92,7 +92,7 @@ def get_plasma_tumor_fraction(genes) -> Optional[str]:
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  ptf_val = ptf_entry.get("Alterations", {}).get("Alteration", {}).get("Name", "")
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  try:
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  # See https://github.com/lifeomic/phc-ingestion/pull/129
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- float_val = float(ptf_val)
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+ float_val = float(ptf_val.strip("%"))
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  if float_val > 0:
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  return "Elevated"
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  elif float_val == 0:
{phc_ingestion-0.8.40.dist-info → phc_ingestion-0.8.41.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: phc-ingestion
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- Version: 0.8.40
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+ Version: 0.8.41
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  Summary: Functions for LifeOmic PHC genomic ingestions
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  License: MIT
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  Author-email: LifeOmic Development <development@lifeomic.com>
{phc_ingestion-0.8.40.dist-info → phc_ingestion-0.8.41.dist-info}/RECORD RENAMED
@@ -22,7 +22,7 @@ ingestion/foundation/process.py,sha256=T8YTvXRiThqE1LTERhrzvvD69mP4qJ7soJ1ZIbu8Y
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  ingestion/foundation/util/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  ingestion/foundation/util/cnv.py,sha256=YSKCaOBhjZDNXth_GxC-50crDURpTNCMefoHo0uO7lQ,4215
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  ingestion/foundation/util/fnv.py,sha256=-VstGsBKXM0duC-IpwUkektoTZ9yQUR0IQcDb1HibY0,5937
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- ingestion/foundation/util/ga4gh.py,sha256=UBX_9AsmXfnrd3PgIlqZJoKPqvVfDougIAOOdqDa8DM,11123
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+ ingestion/foundation/util/ga4gh.py,sha256=dn7uoQdnKHfIVCSHVEyPpR0jc1uRp1YB4P_9tLMOxMs,11134
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  ingestion/foundation/util/interpretation.py,sha256=LVVUmMyD6Un1rIKXqiyQDUC6oIJUd8cU3I9YHD5fsXg,405
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  ingestion/foundation/util/vcf_etl.py,sha256=ZBrX1XGRz-ymLUEiVcjjqmPZPb-AfD9On8UkZJDa1Dk,2133
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  ingestion/generic/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -54,6 +54,6 @@ ingestion/vcf_standardization/util/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQe
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  ingestion/vcf_standardization/util/af_helpers.py,sha256=dpTzoeIQVeBRt0ETF3a9rp5ojZqznHg4x_hCZ8OPcOg,1061
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  ingestion/vcf_standardization/util/dp_helpers.py,sha256=Nq8oLOLObu4_pv16qwwgpALRlUoJVCULrd9cFOD-eoI,823
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  ingestion/vcf_standardization/util/read_write.py,sha256=x3Pf6Dq8tmolblbCS5CrNmrcHS3FGfqBSFpFgvFGC4g,2526
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- phc_ingestion-0.8.40.dist-info/WHEEL,sha256=B19PGBCYhWaz2p_UjAoRVh767nYQfk14Sn4TpIZ-nfU,87
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- phc_ingestion-0.8.40.dist-info/METADATA,sha256=5zLM3NEBjrPzceSjLU85NXFxQL1S3GdyLpOitDNIdLI,573
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- phc_ingestion-0.8.40.dist-info/RECORD,,
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+ phc_ingestion-0.8.41.dist-info/WHEEL,sha256=B19PGBCYhWaz2p_UjAoRVh767nYQfk14Sn4TpIZ-nfU,87
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+ phc_ingestion-0.8.41.dist-info/METADATA,sha256=YefyKypDkMluRD6uKVTI1EObzXpr2JlkSpO_SfGh5SE,573
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+ phc_ingestion-0.8.41.dist-info/RECORD,,