phc-ingestion 0.8.39__py3-none-any.whl → 0.8.40__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (4) hide show
  1. ingestion/foundation/util/ga4gh.py +2 -0
  2. {phc_ingestion-0.8.39.dist-info → phc_ingestion-0.8.40.dist-info}/METADATA +1 -1
  3. {phc_ingestion-0.8.39.dist-info → phc_ingestion-0.8.40.dist-info}/RECORD +4 -4
  4. {phc_ingestion-0.8.39.dist-info → phc_ingestion-0.8.40.dist-info}/WHEEL +0 -0
ingestion/foundation/util/ga4gh.py CHANGED
@@ -82,6 +82,8 @@ def get_plasma_tumor_fraction(genes) -> Optional[str]:
82
82
  # We need to support both the old and the new names to account for reingestions
83
83
  "Low": "Not Elevated",
84
84
  "High": "Elevated",
85
+ # 12/2/2024 Foundation changed "Elevated Tumor Fraction Not Detected" to "Not Detected"
86
+ "Not Detected": "Not Elevated",
85
87
  }
86
88
  ptf_entry_names = ["Tumor Fraction", "ctDNA Tumor Fraction"]
87
89
  entries = genes.get("Gene", [])
{phc_ingestion-0.8.39.dist-info → phc_ingestion-0.8.40.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: phc-ingestion
3
- Version: 0.8.39
3
+ Version: 0.8.40
4
4
  Summary: Functions for LifeOmic PHC genomic ingestions
5
5
  License: MIT
6
6
  Author-email: LifeOmic Development <development@lifeomic.com>
{phc_ingestion-0.8.39.dist-info → phc_ingestion-0.8.40.dist-info}/RECORD RENAMED
@@ -22,7 +22,7 @@ ingestion/foundation/process.py,sha256=T8YTvXRiThqE1LTERhrzvvD69mP4qJ7soJ1ZIbu8Y
22
22
  ingestion/foundation/util/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
23
23
  ingestion/foundation/util/cnv.py,sha256=YSKCaOBhjZDNXth_GxC-50crDURpTNCMefoHo0uO7lQ,4215
24
24
  ingestion/foundation/util/fnv.py,sha256=-VstGsBKXM0duC-IpwUkektoTZ9yQUR0IQcDb1HibY0,5937
25
- ingestion/foundation/util/ga4gh.py,sha256=nc14JStpT7tG7v-dXTrbpPZi29I-HbKKBGNxEZAudhg,10987
25
+ ingestion/foundation/util/ga4gh.py,sha256=UBX_9AsmXfnrd3PgIlqZJoKPqvVfDougIAOOdqDa8DM,11123
26
26
  ingestion/foundation/util/interpretation.py,sha256=LVVUmMyD6Un1rIKXqiyQDUC6oIJUd8cU3I9YHD5fsXg,405
27
27
  ingestion/foundation/util/vcf_etl.py,sha256=ZBrX1XGRz-ymLUEiVcjjqmPZPb-AfD9On8UkZJDa1Dk,2133
28
28
  ingestion/generic/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -54,6 +54,6 @@ ingestion/vcf_standardization/util/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQe
54
54
  ingestion/vcf_standardization/util/af_helpers.py,sha256=dpTzoeIQVeBRt0ETF3a9rp5ojZqznHg4x_hCZ8OPcOg,1061
55
55
  ingestion/vcf_standardization/util/dp_helpers.py,sha256=Nq8oLOLObu4_pv16qwwgpALRlUoJVCULrd9cFOD-eoI,823
56
56
  ingestion/vcf_standardization/util/read_write.py,sha256=x3Pf6Dq8tmolblbCS5CrNmrcHS3FGfqBSFpFgvFGC4g,2526
57
- phc_ingestion-0.8.39.dist-info/WHEEL,sha256=B19PGBCYhWaz2p_UjAoRVh767nYQfk14Sn4TpIZ-nfU,87
58
- phc_ingestion-0.8.39.dist-info/METADATA,sha256=ogeBhWcNlAxc4jcbteveRr-zJYhlQASc9UgZbJnF0Wc,573
59
- phc_ingestion-0.8.39.dist-info/RECORD,,
57
+ phc_ingestion-0.8.40.dist-info/WHEEL,sha256=B19PGBCYhWaz2p_UjAoRVh767nYQfk14Sn4TpIZ-nfU,87
58
+ phc_ingestion-0.8.40.dist-info/METADATA,sha256=5zLM3NEBjrPzceSjLU85NXFxQL1S3GdyLpOitDNIdLI,573
59
+ phc_ingestion-0.8.40.dist-info/RECORD,,