phc-ingestion 0.8.31__py3-none-any.whl → 0.8.32__py3-none-any.whl

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Files changed (4) hide show
  1. ingestion/nextgen/util/process_vcf.py +1 -1
  2. {phc_ingestion-0.8.31.dist-info → phc_ingestion-0.8.32.dist-info}/METADATA +1 -1
  3. {phc_ingestion-0.8.31.dist-info → phc_ingestion-0.8.32.dist-info}/RECORD +4 -4
  4. {phc_ingestion-0.8.31.dist-info → phc_ingestion-0.8.32.dist-info}/WHEEL +0 -0
ingestion/nextgen/util/process_vcf.py CHANGED
@@ -206,7 +206,7 @@ def process_vcf(
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  def map_vendsig(vendsig: str) -> str:
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  if vendsig in ["Pathogenic"]:
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  return "VENDSIG=Pathogenic"
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- elif vendsig in ["Likely Pathogenic"]:
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+ elif vendsig in ["Likely Pathogenic", "LikelyPathogenic"]:
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  return "VENDSIG=Likely pathogenic"
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  elif vendsig in ["VUS"]:
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  return "VENDSIG=Uncertain significance"
{phc_ingestion-0.8.31.dist-info → phc_ingestion-0.8.32.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: phc-ingestion
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- Version: 0.8.31
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+ Version: 0.8.32
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  Summary: Functions for LifeOmic PHC genomic ingestions
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  License: MIT
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  Author-email: LifeOmic Development <development@lifeomic.com>
{phc_ingestion-0.8.31.dist-info → phc_ingestion-0.8.32.dist-info}/RECORD RENAMED
@@ -38,7 +38,7 @@ ingestion/nextgen/util/pre_filter_somatic_vcf.py,sha256=K_gH4EnUXrKB22u_f8FqQVGr
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  ingestion/nextgen/util/process_cnv.py,sha256=m-AhsXFlYw4LTzgJJaj5vXYbK5n3H7cImzBxD2To6M0,2598
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  ingestion/nextgen/util/process_manifest.py,sha256=FOa-m78layb5TFTktaDHkHT9hAGUeH9ZPGeqgBncz64,8585
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  ingestion/nextgen/util/process_structural.py,sha256=fUhoVGY5XHXPqLjC9bKD8JpXNDF9VbUQGl3Y3d7vG6E,7703
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- ingestion/nextgen/util/process_vcf.py,sha256=TvyV5wyXXSpFy2lc6h3ljqVQ5VeDPGxihHl2_K6LalQ,8432
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+ ingestion/nextgen/util/process_vcf.py,sha256=H2Jd5CzQiTBOjk3w95LuPp2rN79bKHBrMRDjG-YNTXE,8452
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  ingestion/nextgen/util/types.py,sha256=SSzt5gv-kss1PR45eQUelypWrGI-dAfQMO3GSD-T-Wg,22
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  ingestion/resources/GRCh37_map.csv.gz,sha256=JOEkjtbYrJpIdyoZdCvfJhvvz2dNfkSve7lXSXkCCD8,408290
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  ingestion/resources/GRCh38_map.csv.gz,sha256=qriYO2_buCCb4T6WcuZ-pCwPxMsm0TL2OxAHvJ1cEfA,612373
@@ -54,6 +54,6 @@ ingestion/vcf_standardization/util/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQe
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  ingestion/vcf_standardization/util/af_helpers.py,sha256=dpTzoeIQVeBRt0ETF3a9rp5ojZqznHg4x_hCZ8OPcOg,1061
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  ingestion/vcf_standardization/util/dp_helpers.py,sha256=Nq8oLOLObu4_pv16qwwgpALRlUoJVCULrd9cFOD-eoI,823
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  ingestion/vcf_standardization/util/read_write.py,sha256=IQotJ27To1MoQcRstc5AbHZtUuJz5cqkkZiHsDNaBvI,2471
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- phc_ingestion-0.8.31.dist-info/WHEEL,sha256=B19PGBCYhWaz2p_UjAoRVh767nYQfk14Sn4TpIZ-nfU,87
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- phc_ingestion-0.8.31.dist-info/METADATA,sha256=2b0ZTRMP3dMucsx_0wMtLBripA-ak7EgMZsGCUbhT24,552
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- phc_ingestion-0.8.31.dist-info/RECORD,,
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+ phc_ingestion-0.8.32.dist-info/WHEEL,sha256=B19PGBCYhWaz2p_UjAoRVh767nYQfk14Sn4TpIZ-nfU,87
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+ phc_ingestion-0.8.32.dist-info/METADATA,sha256=dOeze5ldcBfhTefz5dF0weoa71CgORwhYWFGl8JAEPg,552
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+ phc_ingestion-0.8.32.dist-info/RECORD,,