phc-ingestion 0.10.0__py3-none-any.whl → 0.10.1__py3-none-any.whl

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Files changed (4) hide show
  1. ingestion/nebula/process.py +2 -1
  2. {phc_ingestion-0.10.0.dist-info → phc_ingestion-0.10.1.dist-info}/METADATA +1 -1
  3. {phc_ingestion-0.10.0.dist-info → phc_ingestion-0.10.1.dist-info}/RECORD +4 -4
  4. {phc_ingestion-0.10.0.dist-info → phc_ingestion-0.10.1.dist-info}/WHEEL +0 -0
ingestion/nebula/process.py CHANGED
@@ -5,9 +5,10 @@ from ingestion.nebula.util.vcf import process_nebula_vcf
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  from lifeomic_logging import scoped_logger
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- def process_nebula(infile, outpath, file_name, source_file_id):
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+ def process(infile, outpath, file_name, source_file_id):
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  with scoped_logger(__name__) as log:
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+ log.info(f"Beginning Nebula ingestion for file: {file_name}")
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  os.makedirs(f"{outpath}", exist_ok=True)
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  result, file_genome_references, json_data = process_nebula_json(
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  infile, outpath, file_name, source_file_id, log
{phc_ingestion-0.10.0.dist-info → phc_ingestion-0.10.1.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: phc-ingestion
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- Version: 0.10.0
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+ Version: 0.10.1
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  Summary: Functions for LifeOmic PHC genomic ingestions
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  License: MIT
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  Author-email: LifeOmic Development <development@lifeomic.com>
{phc_ingestion-0.10.0.dist-info → phc_ingestion-0.10.1.dist-info}/RECORD RENAMED
@@ -27,7 +27,7 @@ ingestion/generic/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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  ingestion/generic/process.py,sha256=ZaVnZ_gx9faDUsuresI1A0oCegTa-dPQT7DBFMeZGyY,1777
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  ingestion/generic/utils.py,sha256=1MEIru7uq38IjUdL8lcHqDH0oTki9uWrz1f2e-pmRoU,2814
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  ingestion/nebula/__init__.py,sha256=VauK-rup_N8ZXVohx3HYqHX_PE_WoPyMUhdv2R7al4o,45
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- ingestion/nebula/process.py,sha256=8fUzD8rOAQGChm5KPWzeqhi1eHjhUHGd68EhtF80J5U,830
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+ ingestion/nebula/process.py,sha256=r4zKxVRPzl0pI-OInGIy8V_Z2K4UW_iIf9ggUvGZZlk,893
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  ingestion/nebula/util/json.py,sha256=ChThuJjF7o4xMQ4gkX7s2w9wgZ5_k528XxiSI3-gOCU,2230
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  ingestion/nebula/util/vcf.py,sha256=83JWG6ndPxHYZNXVj6-Gon9AY9JnGeR1JMivUQoSHjM,3311
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  ingestion/nextgen/__init__.py,sha256=7LQ-h_Bvc5P1QcHMdzsqi1Qm4fTJn04-ozar2ty9wSc,59
@@ -58,6 +58,6 @@ ingestion/vcf_standardization/util/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQe
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  ingestion/vcf_standardization/util/af_helpers.py,sha256=dpTzoeIQVeBRt0ETF3a9rp5ojZqznHg4x_hCZ8OPcOg,1061
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  ingestion/vcf_standardization/util/dp_helpers.py,sha256=Nq8oLOLObu4_pv16qwwgpALRlUoJVCULrd9cFOD-eoI,823
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  ingestion/vcf_standardization/util/read_write.py,sha256=x3Pf6Dq8tmolblbCS5CrNmrcHS3FGfqBSFpFgvFGC4g,2526
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- phc_ingestion-0.10.0.dist-info/WHEEL,sha256=B19PGBCYhWaz2p_UjAoRVh767nYQfk14Sn4TpIZ-nfU,87
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- phc_ingestion-0.10.0.dist-info/METADATA,sha256=53QJ7i-_8gmJHjmYuZohIdyCNPfCcfrxZzfFiAndd8A,573
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- phc_ingestion-0.10.0.dist-info/RECORD,,
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+ phc_ingestion-0.10.1.dist-info/WHEEL,sha256=B19PGBCYhWaz2p_UjAoRVh767nYQfk14Sn4TpIZ-nfU,87
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+ phc_ingestion-0.10.1.dist-info/METADATA,sha256=TKRNABWds66BCmH2r2QoLxqcqNEZzUsom92zWJdx2aw,573
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+ phc_ingestion-0.10.1.dist-info/RECORD,,