phasorpy 0.6__cp313-cp313-win_amd64.whl → 0.8__cp313-cp313-win_amd64.whl

phasorpy/plot/_phasorplot_fret.py

@@ -17,15 +17,17 @@ from matplotlib.lines import Line2D
 from matplotlib.widgets import Slider
 
 from .._utils import update_kwargs
-from ..phasor import (
+from ..lifetime import (
     phasor_from_fret_acceptor,
     phasor_from_fret_donor,
     phasor_from_lifetime,
     phasor_semicircle,
+)
+from ..phasor import (
     phasor_to_polar,
     phasor_transform,
 )
-from ._phasorplot import PhasorPlot, SemicircleTicks, _semicircle_ticks
+from ._phasorplot import CircleTicks, PhasorPlot, _semicircle_ticks
 
 
 class PhasorPlotFret(PhasorPlot):
@@ -80,7 +82,7 @@ class PhasorPlotFret(PhasorPlot):
     interactive : bool, optional, default: False
         Use matplotlib slider widgets to interactively control parameters.
     **kwargs
-        Additional parameters passed to :py:class:`phasorpy.plot.PhasorPlot`.
+        Optional arguments passed to :py:class:`phasorpy.plot.PhasorPlot`.
 
     See Also
     --------
@@ -118,7 +120,7 @@ class PhasorPlotFret(PhasorPlot):
     _acceptor_background_line: Line2D
     _background_line: Line2D
 
-    _donor_semicircle_ticks: SemicircleTicks | None
+    _donor_semicircle_ticks: CircleTicks | None
 
     def __init__(
         self,
@@ -141,8 +143,8 @@ class PhasorPlotFret(PhasorPlot):
         update_kwargs(
             kwargs,
             title='PhasorPy FRET phasor plot',
-            xlim=[-0.2, 1.1],
-            ylim=[-0.1, 0.8],
+            xlim=(-0.2, 1.1),
+            ylim=(-0.1, 0.8),
         )
         kwargs['allquadrants'] = False
         kwargs['grid'] = False
@@ -211,8 +213,7 @@ class PhasorPlotFret(PhasorPlot):
 
         if donor_fretting < 1.0 and donor_background == 0.0:
             lines = self.line(
-                [donor_real, donor_fret_real],
-                [donor_imag, donor_fret_imag],
+                [donor_real, donor_fret_real], [donor_imag, donor_fret_imag]
             )
         else:
             lines = self.line([0.0, 0.0], [0.0, 0.0])
@@ -304,6 +305,7 @@ class PhasorPlotFret(PhasorPlot):
         self._background_line = lines[0]
 
         if not interactive:
+            ax.legend()
             return
 
         # add sliders
@@ -444,6 +446,7 @@ class PhasorPlotFret(PhasorPlot):
             valstep=0.01,
             valinit=background_imag,
         )
+        ax.legend()
         self._background_imag_slider.on_changed(self._on_changed)
 
     def _on_semicircle_changed(self, value: Any) -> None:
@@ -525,8 +528,7 @@ class PhasorPlotFret(PhasorPlot):
 
         if donor_fretting < 1.0 and donor_background == 0.0:
             self._donor_donor_line.set_data(
-                [donor_real, donor_fret_real],
-                [donor_imag, donor_fret_imag],
+                [donor_real, donor_fret_real], [donor_imag, donor_fret_imag]
             )
         else:
             self._donor_donor_line.set_data([0.0, 0.0], [0.0, 0.0])

phasorpy/utils.py

@@ -1,7 +1,7 @@
 """Utility functions.
 
 The ``phasorpy.utils`` module provides auxiliary and convenience functions
-that do not naturally fit into other modules.
+that do not fit naturally into other modules.
 
 """
 
@@ -18,7 +18,18 @@ import os
 
 
 def logger() -> logging.Logger:
-    """Return ``logging.getLogger('phasorpy')``."""
+    """Return PhasorPy logger instance.
+
+    Returns
+    -------
+    logging.Logger
+        Logger instance for 'phasorpy' namespace.
+
+    Examples
+    --------
+    >>> logger().info('This is a log message')
+
+    """
     return logging.getLogger('phasorpy')
 
 
@@ -52,7 +63,7 @@ def number_threads(
     >>> number_threads()
     1
     >>> number_threads(0)  # doctest: +SKIP
-    8
+    8  # actual value depends on system
 
     """
     if num_threads is None or num_threads < 0:
@@ -101,14 +112,14 @@ def versions(
     -------
     str
         Formatted string containing version information.
-        Format: "<package><dash><version>[<space>(<path>)]<sep>"
+        Format: ``"<package><dash><version>[<space>(<path>)]<sep>"``
 
-    Example
-    -------
-    >>> print(versions())
-    Python-3...
-    phasorpy-0...
-    numpy-...
+    Examples
+    --------
+    >>> print(versions())  # doctest: +SKIP
+    Python-3.13.5
+    phasorpy-0.6
+    numpy-2.3.1
     ...
 
     """
@@ -127,6 +138,7 @@ def versions(
         'tifffile',
         'imagecodecs',
         'lfdfiles',
+        'fbdfile',
         'sdtfile',
         'ptufile',
         'liffile',

{phasorpy-0.6.dist-info → phasorpy-0.8.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: phasorpy
-Version: 0.6
+Version: 0.8
 Summary: Analysis of fluorescence lifetime and hyperspectral images using the phasor approach
 Author: PhasorPy Contributors
 License-Expression: MIT
@@ -18,20 +18,20 @@ Classifier: Topic :: Software Development :: Libraries :: Python Modules
 Classifier: Operating System :: OS Independent
 Classifier: Programming Language :: Python :: 3
 Classifier: Programming Language :: Python :: 3 :: Only
-Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
-Requires-Python: >=3.11
+Classifier: Programming Language :: Python :: 3.14
+Requires-Python: >=3.12
 Description-Content-Type: text/markdown
 License-File: LICENSE.txt
-Requires-Dist: numpy>=1.25.0
-Requires-Dist: matplotlib>=3.8.0
-Requires-Dist: scipy>=1.11.0
+Requires-Dist: numpy>=2.0.0
+Requires-Dist: matplotlib>=3.9.0
+Requires-Dist: scipy>=1.13.0
 Requires-Dist: click
 Requires-Dist: pooch
 Requires-Dist: tqdm
 Requires-Dist: scikit-learn>=1.5.0
-Requires-Dist: xarray>=2023.4.0
+Requires-Dist: xarray>=2024.6.0
 Requires-Dist: tifffile>=2024.8.30
 Provides-Extra: docs
 Requires-Dist: sphinx; extra == "docs"
@@ -46,6 +46,7 @@ Requires-Dist: lfdfiles>=2024.5.24; extra == "all"
 Requires-Dist: sdtfile>=2024.5.24; extra == "all"
 Requires-Dist: ptufile>=2024.9.14; extra == "all"
 Requires-Dist: liffile>=2025.2.10; extra == "all"
+Requires-Dist: fbdfile>=2025.9.18; extra == "all"
 Requires-Dist: pawflim; extra == "all"
 Dynamic: license-file
 

phasorpy-0.8.dist-info/RECORD

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phasorpy-0.6.dist-info/RECORD

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