petal-qc 0.0.0__py3-none-any.whl

petal_qc/utils/utils.py

@@ -0,0 +1,180 @@
+#!/usr/bin/env python3
+"""A set of utilities."""
+import fnmatch
+import os
+import re
+from collections.abc import Iterable
+from pathlib import Path
+import numpy as np
+
+
+def is_iterable(obj):
+    """Tell if an object is iterable. Strings are not considered iterables."""
+    if isinstance(obj, Iterable):
+        if isinstance(obj, str) or isinstance(obj, bytes):
+            return False
+        else:
+            return True
+    else:
+        return False
+
+
+def all_files(root, patterns='*', single_level=False, yield_folders=False):
+    """A generator that reruns all files in the given folder.
+
+    Args:
+    ----
+        root (file path): The folder
+        patterns (str, optional): The pattern of the files. Defaults to '*'.
+        single_level (bool, optional): If true, do not go into sub folders. Defaults to False.
+        yield_folders (bool, optional): If True, return folders as well. Defaults to False.
+
+    Yields
+    ------
+        A file Path
+
+    """
+    patterns = patterns.split(';')
+    for path, subdirs, files in os.walk(root):
+        if yield_folders:
+            files.extend(subdirs)
+
+        files.sort()
+        for name in files:
+            for pattern in patterns:
+                if fnmatch.fnmatch(name, pattern):
+                    yield os.path.join(path, name)
+                    break
+
+        if single_level:
+            break
+
+
+def find_out_file_name(fnam):
+    """Get file name.
+
+    Check wheter file already exists and build a name with
+    a sequence number.
+
+    Args:
+    ----
+        fnam: Input file name.
+
+    Returns
+    -------
+        new file name with sequence.
+
+    """
+    R = re.compile(r'.*\(([0-9]*)\)')
+    pout = Path(fnam).expanduser().absolute()
+    odir = pout.parent
+    orig_stem = pout.stem
+    lstem = len(orig_stem)
+
+    while pout.exists():
+        version = 1
+        stem = pout.stem[lstem:]
+        M = R.match(stem)
+        if M:
+            version = int(M.group(1))
+            version += 1
+
+        fout = "{} ({}){}".format(orig_stem, version, pout.suffix)
+        pout = Path(odir, fout)
+
+    return pout
+
+
+def output_folder(folder, fname):
+    """Rename file to be "stored" in folder.
+
+    Args:
+    ----
+        folder: The folder path
+        fname: The file path
+
+    Returns
+    -------
+        Path: The new file path
+
+    """
+    if folder is None:
+        return fname
+
+    ifolder = Path(folder).expanduser().resolve()
+    if not ifolder.exists():
+        print("Creating folder {}".format(ifolder))
+        os.makedirs(ifolder)
+
+    # Append folder to output file name
+    of = Path(fname).expanduser().resolve()
+    ofile = ifolder / of.name
+
+    return ofile
+
+
+def find_file(folder, fname):
+    """Find file and fallback to folder if not found.
+
+    Note: it just builds teh file name if the input file
+          does not exist. Does not check for esistance of file
+          within folder.
+
+    Args:
+    ----
+        folder: The folder
+        fname: The file name
+
+    Returns
+    -------
+        Path: the new file path.
+
+    """
+    ifile = Path(fname).expanduser().resolve()
+    if folder is None:
+        return ifile
+
+    if ifile.exists():
+        return ifile
+
+    else:
+        ifolder = Path(folder).expanduser().resolve()
+        ofile = ifolder / ifile.name
+        return ofile
+
+
+def get_min_max(values, step=None):
+    """Return min and max.
+
+    The values are alined with step.
+
+    Args:
+    ----
+        values: Array of values
+        step (optional): The step. Defaults to 1.0.
+
+    Returns
+    -------
+        min, max.
+
+    """
+    vmax = np.amax(values)
+    vmin = np.amin(values)
+
+    if step is not None:
+        ivmax = round(vmax)
+        if ivmax < vmax:
+            ivmax += step
+            if abs(ivmax-vmax) < 0.25*step:
+                ivmax += step
+
+        ivmin = np.round(vmin)
+        if ivmin > vmin:
+            ivmin -= step
+            if abs(ivmin-vmin) < 0.25*step:
+                ivmin -= step
+
+        return ivmin, ivmax, abs(ivmax-ivmin)
+
+    else:
+        return vmin, vmax, abs(vmax-vmin)

petal_qc-0.0.0.dist-info/METADATA

@@ -0,0 +1,29 @@
+Metadata-Version: 2.1
+Name: petal_qc
+Version: 0.0.0
+Summary: A collection of scripts for Petal CORE QC.
+Author-email: Carlos Lacasta <carlos.lacasta@cern.ch>
+Project-URL: Homepage, https://gitlab.cern.ch/atlas-itk/sw/db/itk-pdb-gtk-gui-utils
+Project-URL: Bug Tracker, https://gitlab.cern.ch/atlas-itk/sw/db/itk-pdb-gtk-gui-utils/-/issues
+Classifier: Programming Language :: Python :: 3
+Classifier: Operating System :: OS Independent
+Requires-Python: >=3.7
+Description-Content-Type: text/markdown
+Requires-Dist: itkdb
+Requires-Dist: itkdb-gtk
+Requires-Dist: numpy
+Requires-Dist: matplotlib
+Requires-Dist: lmfit
+Requires-Dist: openpyxl
+Requires-Dist: pandas
+Requires-Dist: python-dateutil
+Requires-Dist: python-docx
+Requires-Dist: scipy
+Requires-Dist: scikit-image
+
+# Petal QC
+
+The folder contains a collections of scripts to make the analysis of the Petal
+QC metrology and thermal tests.
+
+They will also upload the tests to the DB if required.

petal_qc-0.0.0.dist-info/RECORD

@@ -0,0 +1,51 @@
+petal_qc/__init__.py,sha256=jVzpfX2cxFKJtyeuUIhf3o6dornHFtUkoUUjFRN9H08,337
+petal_qc/BTreport/CheckBTtests.py,sha256=WGENYpswLxs-BLQxXRxJC-6i-tdRZkIhNzhYtItfVBY,8845
+petal_qc/BTreport/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+petal_qc/BTreport/bustapeReport.py,sha256=Db4WhOhvqku-YatNwxrIwZ4g7l7hVfMth2hAV3JRZ6A,4151
+petal_qc/metrology/Cluster.py,sha256=UtZ5q1EFb8f3qC0hEYBbhRg2pPbW_28aJX2EEMu00Ho,2105
+petal_qc/metrology/DataFile.py,sha256=PbFqy3-WSj69epV5EjhHc1GKhA8I74FmJYOXUjN0V20,1367
+petal_qc/metrology/PetalMetrology.py,sha256=H4MwuQ2QxP_Td9KtMly_-osXT1owigzC7QlmRub7oRo,11886
+petal_qc/metrology/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+petal_qc/metrology/all2csv.py,sha256=KTgEGaediylwkGN7gyWyQqUjU0f9FOa3xF4z1W38EcU,1569
+petal_qc/metrology/analyze_locking_points.py,sha256=AD5DRlZDpgzZS8sUwuUnzwws4BtJZrNtsJ-IWG6xvcQ,20539
+petal_qc/metrology/cold_noise.py,sha256=PuTaQ73WrQCJdE9ezS4UFmA3atwCuvM0ZsUOYu1ZIBw,3106
+petal_qc/metrology/comparisonTable.py,sha256=6Zmh-x0ahs28ZJQuHMrIiRcblUmTN1_-1otFSRNMPds,1743
+petal_qc/metrology/convert_mitutoyo.py,sha256=HdXQzFL5y7r8qXDzti91VItDQ-y6D9rEAYknn4yHwBs,5449
+petal_qc/metrology/convert_smartscope.py,sha256=es3PoUd5d5rpHebgwsS9nrc3uuy9uFKOQ00ZdU5XHQ0,3836
+petal_qc/metrology/coreMetrology.py,sha256=yDgChOmOZ7lKd6c_Je0pFLS0ahszYZoBBgyJ57Nbj3E,13256
+petal_qc/metrology/data2csv.py,sha256=2ttMSmfGLPIaOqZGima2dH6sdnSRAFTHlEbSOfW5ebA,1809
+petal_qc/metrology/do_Metrology.py,sha256=4tbZJfJYXY8QVLiG5_2pThNPzyuqbC3s8xhFdQfC1TU,3977
+petal_qc/metrology/flatness4nigel.py,sha256=SUHwn6pCEUWQV_62-_9-VKrmUdL4gVQcSA3aTtYq958,4071
+petal_qc/metrology/gtkutils.py,sha256=1pOTxiE2EZR9zNNNT5cOetga_4NG9DzLaqQPI4c1EzE,3372
+petal_qc/metrology/petal_flatness.py,sha256=MH3ZlSildLokYnjERQG28qqLg3LL8C6rFLT8VbEI_BA,11190
+petal_qc/metrology/show_data_file.py,sha256=yZPcmMy-1EWWySiBBx0hNB3tPVh19bTr0PDaXSyIF4c,4057
+petal_qc/metrology/testSummary.py,sha256=0BhcEd1BPz2Mbonzi8nyZOzNSzpUqowBFNl5cVutqsk,994
+petal_qc/metrology/test_paralelism.py,sha256=_j__OdUwdXWM494_9HpGPuPHixMwwVphCcvHEfzWi_k,1981
+petal_qc/thermal/CSVImage.py,sha256=Vt2kYmUsZWkQvxcF8fDda3HO1Rb29kPQHnEoHFCqWYo,2038
+petal_qc/thermal/DebugPlot.py,sha256=OmREFwNDAKgoObDmcgHrB4d8m3bf2znfsKVGsb5rBGQ,2119
+petal_qc/thermal/IRBFile.py,sha256=zj82SdI-MDfZq1i0n47PuZMLLx_0oKpE-ZaykJZs6BU,22225
+petal_qc/thermal/IRCore.py,sha256=Iasus1wy1pDQvBMPhcPYN1gFHZGv7tO5KJlpJZGuck4,3029
+petal_qc/thermal/IRDataGetter.py,sha256=dX_FjeGc7qxinJ1JPC_4rSLSJlYtkKuAL31LURfv2a8,9662
+petal_qc/thermal/IRPetal.py,sha256=X6I7JmyWf_9mPHjTsuBztM-1b5wre2NW4VM-6dz4Gow,38208
+petal_qc/thermal/IRPetalParam.py,sha256=BcS302s4kyAuGm_F9zIlKVsPJkftSG71GGMzAl5eZMo,3366
+petal_qc/thermal/PetalColorMaps.py,sha256=6CvJHzRdojLHu3BROYSekHw8g_BJ1lJ_edyhovTIydU,3831
+petal_qc/thermal/Petal_IR_Analysis.py,sha256=8Deh_bJ5B7DdaUV18saboF7fXZ_8Bt1vkUlsk5RqVeo,3910
+petal_qc/thermal/PipeFit.py,sha256=qbNvi547U9EttfRxCaIrizK69Hw3mJOKuG4SGRQaHRk,17191
+petal_qc/thermal/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+petal_qc/thermal/analyze_IRCore.py,sha256=v9cf5GAP_yfL829WK5Qyv1fOl5LdIsLfZEVPQQXiQ1A,13740
+petal_qc/thermal/contours.py,sha256=ampCKm4byZYKb_4eJFjIkdFIl2bqVXD2mV13d2XUWlw,8244
+petal_qc/thermal/create_IRCore.py,sha256=S4M7OQYHcuh7lX3XmDHWOnIhT_1EIr-XdbsRgMGOOEQ,5678
+petal_qc/thermal/pipe_read.py,sha256=HrAtEbf8pMhJDETzkevodiTbuprIOh4yHv6PzpRoz7Q,5040
+petal_qc/thermal/show_IR_petal.py,sha256=PGAq7qiWmchYx4tGPgWJxeHi2N-pM_C1a4tmXYe0htY,13029
+petal_qc/utils/Geometry.py,sha256=XwA_aojk880N-jC1_bnMYFK0bcD-L96JPS81NUerJf0,19765
+petal_qc/utils/Progress.py,sha256=gCti4n2xfCcOTlAff5GchabGE5BCwavvDZYYKdbEsXU,4064
+petal_qc/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+petal_qc/utils/all_files.py,sha256=4ja_DkbTYPY3gUPBAZq0p7KB9lnXZx-OCnpTHg9tm4I,1044
+petal_qc/utils/docx_utils.py,sha256=Eye16PF8W0mPBVdQvgFKWxPYV7-hzBgANPDZtUEjzf8,5805
+petal_qc/utils/fit_utils.py,sha256=3KUGWpBMV-bVDkQHWBigXot8chOpjAVBJ5H5b5dbdjk,5349
+petal_qc/utils/utils.py,sha256=CqCsNIcEg6FQb3DN70tmqeLVLlQqsRfDzhfGevlnfBc,4035
+petal_qc-0.0.0.dist-info/METADATA,sha256=rg1E5POenrFwIY540PaK6cYolr9epkR7V3OPUO7HDWo,943
+petal_qc-0.0.0.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
+petal_qc-0.0.0.dist-info/entry_points.txt,sha256=ZsBmzA1gRvZSe4ZKcxlo0b-RBjySccqBhL6g_CJhNaM,92
+petal_qc-0.0.0.dist-info/top_level.txt,sha256=CCo1Xe6kLS79PruhsB6bk2CuL9VFtNdNpgJjYUs4jk4,9
+petal_qc-0.0.0.dist-info/RECORD,,

petal_qc-0.0.0.dist-info/WHEEL

@@ -0,0 +1,5 @@
+Wheel-Version: 1.0
+Generator: bdist_wheel (0.43.0)
+Root-Is-Purelib: true
+Tag: py3-none-any
+

petal_qc-0.0.0.dist-info/entry_points.txt

@@ -0,0 +1,3 @@
+[gui_scripts]
+bustapeReport = petal_qc:bustapeReport
+coreMetrology = petal_qc:coreMetrology

petal_qc-0.0.0.dist-info/top_level.txt

@@ -0,0 +1 @@
+petal_qc