patchsim 0.1.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (29) hide show
  1. patchsim/__init__.py +27 -0
  2. patchsim/calibration.py +834 -0
  3. patchsim/cli.py +393 -0
  4. patchsim/core/__init__.py +0 -0
  5. patchsim/core/expressions.py +144 -0
  6. patchsim/core/model.py +362 -0
  7. patchsim/core/model_runner.py +44 -0
  8. patchsim/core/simulation.py +878 -0
  9. patchsim/models/__init__.py +1 -0
  10. patchsim/sensitivity.py +420 -0
  11. patchsim/templates/models/seir.yaml +10 -0
  12. patchsim/templates/models/sir.yaml +8 -0
  13. patchsim/templates/models/sirs.yaml +10 -0
  14. patchsim/templates/models/sis.yaml +8 -0
  15. patchsim/templates/project/config.yaml +33 -0
  16. patchsim/templates/project/data/networks/network-static.csv +5 -0
  17. patchsim/templates/project/data/patch/patch-population.csv +3 -0
  18. patchsim/templates/project/data/seeds/seed-initial.csv +3 -0
  19. patchsim/templates/project/output/.gitkeep +0 -0
  20. patchsim/utils/__init__.py +0 -0
  21. patchsim/utils/geo.py +527 -0
  22. patchsim/utils/loader.py +6 -0
  23. patchsim/utils/logger.py +76 -0
  24. patchsim/utils/viz.py +65 -0
  25. patchsim-0.1.0.dist-info/METADATA +917 -0
  26. patchsim-0.1.0.dist-info/RECORD +29 -0
  27. patchsim-0.1.0.dist-info/WHEEL +4 -0
  28. patchsim-0.1.0.dist-info/entry_points.txt +2 -0
  29. patchsim-0.1.0.dist-info/licenses/LICENSE +674 -0
patchsim-0.1.0.dist-info/RECORD ADDED
@@ -0,0 +1,29 @@
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+ patchsim/__init__.py,sha256=zwOgb_I9fThlIZJoI2cM6jW1R3W7OCetwUnAZ1a3bMU,750
2
+ patchsim/calibration.py,sha256=WUoNuP2gY50bTi3I_zBCHfGdVj-rCd8WJevRn_GYSXU,36239
3
+ patchsim/cli.py,sha256=9TYpXR1fSI3fw9iAMu9QgnfRGW-bPR3cFucBxC91Ugk,16499
4
+ patchsim/sensitivity.py,sha256=rNDthO-O-4_l9aNPzSWGRHvyuJtjsY_jeYXlkn_iD9Y,16759
5
+ patchsim/core/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
6
+ patchsim/core/expressions.py,sha256=S0WVkZLNbi171RCqtV2eKAVfzgMtzu3YzdBHdrfdxOQ,5292
7
+ patchsim/core/model.py,sha256=kaOMQFMHG4AgfmmDCWzcW4hS1DNKBksWswR9tohIBts,16397
8
+ patchsim/core/model_runner.py,sha256=-ObHYZvRfBABzJWrCd2g1NFeFKvYQMIj8q9b3tPwAKk,1374
9
+ patchsim/core/simulation.py,sha256=guGQ-GxuuKD4F1XRwydb5Bvtd8QOMbIeozU6gHRnebA,38528
10
+ patchsim/models/__init__.py,sha256=Hh3IAa95kLKXn_KRfOxaWC9btf-qOZITqe6jZXFMBt0,62
11
+ patchsim/templates/models/seir.yaml,sha256=F8tDLgrzGa7ds92YvcP7TJ23nhTsh77ZtR7ygahjLnY,191
12
+ patchsim/templates/models/sir.yaml,sha256=OhC4PT5GQllHOpapbXhzdLLTwBDPg7R9qqM64vsfDc0,147
13
+ patchsim/templates/models/sirs.yaml,sha256=s-vArZUXL6mOn4tLKYo_qRHlKQyk7o8vZC9W4ZAIlIw,188
14
+ patchsim/templates/models/sis.yaml,sha256=SEgOeplgRPUyktxESAzDIK6VeELJ4rR8YqCn46g-pCo,143
15
+ patchsim/templates/project/config.yaml,sha256=57FF4uF-l0wy2sblqbgppAWp3HFT4Ie2KetxU7F_IaU,879
16
+ patchsim/templates/project/data/networks/network-static.csv,sha256=YzsTl8DjqR4qhKg1mdMxxgJCU98VnbbkKd8-Jhobi8w,65
17
+ patchsim/templates/project/data/patch/patch-population.csv,sha256=9IMwRhAmNHcNHgxT2fnKPPoTTXebu2rmgExTh08Jyc0,30
18
+ patchsim/templates/project/data/seeds/seed-initial.csv,sha256=rron-hqLRiOzwALX3aoSZY5E5C3YG4balrFjS6eJemI,32
19
+ patchsim/templates/project/output/.gitkeep,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
20
+ patchsim/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
21
+ patchsim/utils/geo.py,sha256=LLMOPi-k_zXPDaJohfSsRcXDW4eA0AiDeq8NkioL1MU,20355
22
+ patchsim/utils/loader.py,sha256=Lf2iVDibzzuR4v9J4jLmWYYTlznLdRrAob5JByQOcXI,242
23
+ patchsim/utils/logger.py,sha256=zR-e-qShHhFmR9Cou3jnMXuyp_03UAEH2P1Xqw-Wdas,3323
24
+ patchsim/utils/viz.py,sha256=x0ceqR_2DcbVhHKEnMsoegsngTm-On4x2mvR4Zw12ls,2218
25
+ patchsim-0.1.0.dist-info/METADATA,sha256=wCaYSI3patLJmxSbkCneNvfcWgzQN9pOv9pneaLtOio,48743
26
+ patchsim-0.1.0.dist-info/WHEEL,sha256=zOwg4jB6zX2kU910N-cMawjivD6tO8NEWvE12je1bVk,87
27
+ patchsim-0.1.0.dist-info/entry_points.txt,sha256=UgW2KOdP7ph-wu-V7kQtzKU835XTMO_KItss0WpweO0,47
28
+ patchsim-0.1.0.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
29
+ patchsim-0.1.0.dist-info/RECORD,,
patchsim-0.1.0.dist-info/WHEEL ADDED
@@ -0,0 +1,4 @@
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+ Wheel-Version: 1.0
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+ Generator: hatchling 1.32.0
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+ Root-Is-Purelib: true
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+ Tag: py3-none-any
patchsim-0.1.0.dist-info/entry_points.txt ADDED
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+ [console_scripts]
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+ patchsim = patchsim.cli:main