patch-fixer 0.2.2__py3-none-any.whl

patch_fixer/__init__.py

@@ -0,0 +1 @@
+from .patch_fixer import fix_patch

patch_fixer/patch_fixer.py

@@ -0,0 +1,400 @@
+#!/usr/bin/env python3
+import os
+import re
+import sys
+from pathlib import Path
+
+from git import Repo
+
+path_regex = r'(?:/[A-Za-z0-9_.-]+)*'
+regexes = {
+    "DIFF_LINE": re.compile(rf'diff --git (a{path_regex}+) (b{path_regex}+)'),
+    "MODE_LINE": re.compile(r'(new|deleted) file mode [0-7]{6}'),
+    "INDEX_LINE": re.compile(r'index [0-9a-f]{7,64}\.\.[0-9a-f]{7,64}(?: [0-7]{6})?|similarity index ([0-9]+)%'),
+    "BINARY_LINE": re.compile(rf'Binary files (a{path_regex}+|/dev/null) and (b{path_regex}+|/dev/null) differ'),
+    "RENAME_FROM": re.compile(rf'rename from ({path_regex})'),
+    "RENAME_TO": re.compile(rf'rename to ({path_regex})'),
+    "FILE_HEADER_START": re.compile(rf'--- (a{path_regex}+|/dev/null)'),
+    "FILE_HEADER_END": re.compile(rf'\+\+\+ (b{path_regex}+|/dev/null)'),
+    "HUNK_HEADER": re.compile(r'^@@ -(\d+),(\d+) \+(\d+),(\d+) @@(.*)$'),
+    "END_LINE": re.compile(r'\')
+}
+
+
+class MissingHunkError(Exception):
+    pass
+
+
+def normalize_line(line):
+    if line.startswith('+'):
+        # safe to normalize new content
+        return '+' + line[1:].rstrip() + "\n"
+    else:
+        # preserve exactly (only normalize line endings)
+        return line.rstrip("\r\n") + "\n"
+
+def find_hunk_start(context_lines, original_lines):
+    """Search original_lines for context_lines and return start line index (0-based)."""
+    ctx = []
+    for line in context_lines:
+        if line.startswith(" "):
+            ctx.append(line.lstrip(" "))
+        elif line.startswith("-"):
+            ctx.append(line.lstrip("-"))
+        elif line.isspace() or line == "":
+            ctx.append(line)
+    if not ctx:
+        raise ValueError("Cannot search for empty hunk.")
+    for i in range(len(original_lines) - len(ctx) + 1):
+        # this part will fail if the diff is malformed beyond hunk header
+        equal_lines = [original_lines[i+j].strip() == ctx[j].strip() for j in range(len(ctx))]
+        if all(equal_lines):
+            return i
+    return 0
+
+
+def match_line(line):
+    for line_type, regex in regexes.items():
+        match = regex.match(line)
+        if match:
+            return match.groups(), line_type
+    return None, None
+
+
+def split_ab(match_groups):
+    a, b = match_groups
+    a = f"./{a[2:]}"
+    b = f"./{b[2:]}"
+    return a, b
+
+
+def reconstruct_file_header(diff_line, header_type):
+    # reconstruct file header based on last diff line
+    diff_groups, diff_type = match_line(diff_line)
+    assert diff_type == "DIFF_LINE", "Indexing error in last diff calculation"
+    a, b = diff_groups
+    match header_type:
+        case "FILE_HEADER_START":
+            return f"--- {a}"
+        case "FILE_HEADER_END":
+            return f"+++ {b}"
+        case _:
+            raise ValueError(f"Unsupported header type: {header_type}")
+
+
+def capture_hunk(current_hunk, original_lines, offset, last_hunk, hunk_context):
+    # compute line counts
+    old_count = sum(1 for l in current_hunk if l.startswith((' ', '-')))
+    new_count = sum(1 for l in current_hunk if l.startswith((' ', '+')))
+
+    # compute starting line in original file
+    old_start = find_hunk_start(current_hunk, original_lines) + 1
+
+    # if the line number descends, we either have a bad match or a new file
+    if old_start < last_hunk:
+        raise MissingHunkError
+    else:
+        new_start = old_start + offset
+
+    offset += (new_count - old_count)
+
+    last_hunk = old_start
+
+    # write corrected header
+    fixed_header = f"@@ -{old_start},{old_count} +{new_start},{new_count} @@{hunk_context}\n"
+
+    return fixed_header, offset, last_hunk
+
+
+def regenerate_index(old_path, new_path, cur_dir):
+    repo = Repo(cur_dir)
+    mode = " 100644"     # TODO: check if mode can be a different number
+
+    # file deletion
+    if new_path == "/dev/null":
+        old_sha = repo.git.hash_object(old_path)
+        new_sha = "0000000"
+        mode = ""   # deleted file can't have a mode
+
+    else:
+        raise NotImplementedError(
+            "Regenerating index not yet supported in the general case, "
+            "as this would require manually applying the patch first."
+        )
+
+    return f"index {old_sha}..{new_sha}{mode}"
+
+
+def fix_patch(patch_lines, original):
+    dir_mode = os.path.isdir(original)
+    original_path = Path(original).absolute()
+
+    # make relative paths in the diff work
+    os.chdir(original_path)
+
+    fixed_lines = []
+    current_hunk = []
+    current_file = None
+    first_hunk = True
+    offset = 0      # running tally of how perturbed the new line numbers are
+    last_hunk = 0   # start of last hunk (fixed lineno in changed file)
+    last_diff = 0   # start of last diff (lineno in patch file itself)
+    last_mode = 0   # most recent "new file mode" or "deleted file mode" line
+    last_index = 0  # most recent "index <hex>..<hex> <file_permissions>" line
+    file_start_header = False
+    file_end_header = False
+    look_for_rename = False
+    similarity_index = None
+    missing_index = False
+    hunk_context = ""
+
+    for i, line in enumerate(patch_lines):
+        match_groups, line_type = match_line(line)
+        match line_type:
+            case "DIFF_LINE":
+                if not first_hunk:
+                    # process last hunk with header in previous file
+                    try:
+                        (
+                            fixed_header,
+                            offset,
+                            last_hunk
+                        ) = capture_hunk(current_hunk, original_lines, offset, last_hunk, hunk_context)
+                    except MissingHunkError:
+                        raise NotImplementedError(f"Could not find hunk in {current_file}:"
+                                                  f"\n\n{"\n".join(current_hunk)}")
+                    fixed_lines.append(fixed_header)
+                    fixed_lines.extend(current_hunk)
+                    current_hunk = []
+                a, b = split_ab(match_groups)
+                if a != b:
+                    raise ValueError(f"Diff paths do not match: \n{a}\n{b}")
+                fixed_lines.append(normalize_line(line))
+                last_diff = i
+                file_start_header = False
+                file_end_header = False
+                first_hunk = True
+            case "MODE_LINE":
+                if last_diff != i - 1:
+                    raise NotImplementedError("Missing diff line not yet supported")
+                last_mode = i
+                fixed_lines.append(normalize_line(line))
+            case "INDEX_LINE":
+                # TODO: verify that mode is present for anything but deletion
+                last_index = i
+                similarity_index = match_groups[0]
+                if similarity_index:
+                    look_for_rename = True
+                fixed_lines.append(normalize_line(line))
+                missing_index = False
+            case "BINARY_LINE":
+                raise NotImplementedError("Binary files not supported yet")
+            case "RENAME_FROM":
+                if not look_for_rename:
+                    pass    # TODO: handle missing index line
+                if last_index != i - 1:
+                    missing_index = True    # need this for existence check in RENAME_TO block
+                    similarity_index = 100  # TODO: is this a dangerous assumption?
+                    fixed_index = "similarity index 100%"
+                    fixed_lines.append(normalize_line(fixed_index))
+                    last_index = i - 1
+                look_for_rename = False
+                current_file = match_groups[0]
+                current_path = Path(current_file).absolute()
+                offset = 0
+                last_hunk = 0
+                if not Path.exists(current_path):
+                    if similarity_index == 100:
+                        fixed_lines.append(normalize_line(line))
+                        look_for_rename = True
+                        continue
+                    raise NotImplementedError("Parsing files that were both renamed and modified is not yet supported.")
+                if dir_mode or current_path == original_path:
+                    with open(current_path, encoding='utf-8') as f:
+                        original_lines = [l.rstrip('\n') for l in f.readlines()]
+                    fixed_lines.append(normalize_line(line))
+                    # TODO: analogous boolean to `file_start_header`?
+                else:
+                    raise FileNotFoundError(f"Filename {current_file} in `rename from` header does not match argument {original}")
+            case "RENAME_TO":
+                if last_index != i - 2:
+                    if missing_index:
+                        missing_index = False
+                        last_index = i - 2
+                    else:
+                        raise NotImplementedError("Missing `rename from` header not yet supported.")
+                if look_for_rename:
+                    # the old file doesn't exist, so we need to read this one
+                    current_file = match_groups[0]
+                    current_path = Path(current_file).absolute()
+                    with open(current_path, encoding='utf-8') as f:
+                        original_lines = [l.rstrip('\n') for l in f.readlines()]
+                    fixed_lines.append(normalize_line(line))
+                    look_for_rename = False
+                pass
+            case "FILE_HEADER_START":
+                if look_for_rename:
+                    raise NotImplementedError("Replacing file header with rename not yet supported.")
+                if last_index != i - 1:
+                    missing_index = True
+                    last_index = i - 1
+                file_end_header = False
+                if current_file and not dir_mode:
+                    raise ValueError("Diff references multiple files but only one provided.")
+                current_file = match_groups[0]
+                offset = 0
+                last_hunk = 0
+                if current_file == "/dev/null":
+                    if last_diff > last_mode:
+                        raise NotImplementedError("Missing mode line not yet supported")
+                    fixed_lines.append(normalize_line(line))
+                    file_start_header = True
+                    continue
+                if current_file.startswith("a/"):
+                    current_file = current_file[2:]
+                else:
+                    line = line.replace(current_file, f"a/{current_file}")
+                current_path = Path(current_file).absolute()
+                if not current_path.exists():
+                    raise FileNotFoundError(f"File header start points to non-existent file: {current_file}")
+                if dir_mode or Path(current_file) == Path(original):
+                    with open(current_file, encoding='utf-8') as f:
+                        original_lines = [l.rstrip('\n') for l in f.readlines()]
+                    fixed_lines.append(normalize_line(line))
+                    file_start_header = True
+                else:
+                    raise FileNotFoundError(f"Filename {current_file} in header does not match argument {original}")
+            case "FILE_HEADER_END":
+                if look_for_rename:
+                    raise NotImplementedError("Replacing file header with rename not yet supported.")
+                dest_file = match_groups[0]
+                dest_path = Path(dest_file).absolute()
+                if dest_file.startswith("b/"):
+                    dest_file = dest_file[2:]
+                elif dest_file != "/dev/null":
+                    line = line.replace(dest_file, f"b/{dest_file}")
+                if missing_index:
+                    fixed_index = regenerate_index(current_file, dest_file, original_path)
+                    fixed_lines.append(normalize_line(fixed_index))
+                    last_index = i - 2
+                if not file_start_header:
+                    if dest_file == "/dev/null":
+                        if last_diff > last_mode:
+                            raise NotImplementedError("Missing mode line not yet supported")
+                        a = reconstruct_file_header(patch_lines[last_diff], "FILE_HEADER_START")
+                        fixed_lines.append(normalize_line(a))
+                    else:
+                        # reconstruct file start header based on end header
+                        a = match_groups[0].replace("b", "a")
+                        fixed_lines.append(normalize_line(f"--- {a}"))
+                    file_start_header = True
+                elif current_file == "/dev/null":
+                    if dest_file == "/dev/null":
+                        raise ValueError("File headers cannot both be /dev/null")
+                    elif not dest_path.exists():
+                        raise FileNotFoundError(f"File header end points to non-existent file: {dest_file}")
+                    current_file = dest_file
+                    current_path = Path(current_file).absolute()
+                    if dir_mode or current_path == original_path:
+                        # TODO: in dir mode, verify that current file exists in original path
+                        with open(current_path, encoding='utf-8') as f:
+                            original_lines = [l.rstrip('\n') for l in f.readlines()]
+                        fixed_lines.append(normalize_line(line))
+                        file_end_header = True
+                    else:
+                        raise FileNotFoundError(f"Filename {current_file} in header does not match argument {original}")
+                elif dest_file == "/dev/null":
+                    # TODO: check if other modes are possible
+                    if last_mode < last_diff:
+                        last_mode = last_diff + 1
+                        fixed_lines.insert(last_mode, "deleted file mode 100644")
+                        last_index += 1     # index comes after mode
+                    elif "deleted" not in fixed_lines[last_mode]:
+                        fixed_lines[last_mode] = "deleted file mode 100644"
+                    else:
+                        fixed_lines.append("deleted file mode 100644")
+                elif current_file != dest_file:
+                    raise ValueError(f"File headers do not match: \n{current_file}\n{dest_file}")
+                pass
+            case "HUNK_HEADER":
+                # fix missing file headers before capturing the hunk
+                if not file_end_header:
+                    diff_line = patch_lines[last_diff]
+                    if not file_start_header:
+                        a = reconstruct_file_header(diff_line, "FILE_HEADER_START")
+                        fixed_lines.append(normalize_line(a))
+                        file_start_header = True
+                        current_file = split_ab(match_line(diff_line))[0]
+                    b = reconstruct_file_header(diff_line, "FILE_HEADER_END")
+                    fixed_lines.append(normalize_line(b))
+                    file_end_header = True
+
+                # we can't fix the hunk header before we've captured a hunk
+                if first_hunk:
+                    first_hunk = False
+                    hunk_context = match_groups[4]
+                    continue
+
+                try:
+                    (
+                        fixed_header,
+                        offset,
+                        last_hunk
+                    ) = capture_hunk(current_hunk, original_lines, offset, last_hunk, hunk_context)
+                except MissingHunkError:
+                    raise NotImplementedError(f"Could not find hunk in {current_file}:"
+                                              f"\n\n{"\n".join(current_hunk)}")
+                fixed_lines.append(fixed_header)
+                fixed_lines.extend(current_hunk)
+                current_hunk = []
+                hunk_context = match_groups[4]
+            case "END_LINE":
+                # TODO: add newline at end of file if user requests
+                fixed_lines.append(normalize_line(line))
+            case _:
+                # TODO: fuzzy string matching
+                # this is a normal line, add to current hunk
+                current_hunk.append(normalize_line(line))
+
+    # we need to process the last hunk since there's no new header to catch it
+    try:
+        (
+            fixed_header,
+            offset,
+            last_hunk
+        ) = capture_hunk(current_hunk, original_lines, offset, last_hunk, hunk_context)
+    except MissingHunkError:
+        raise NotImplementedError(f"Could not find hunk in {current_file}:"
+                                  f"\n\n{"\n".join(current_hunk)}")
+    fixed_lines.append(fixed_header)
+    fixed_lines.extend(current_hunk)
+
+    # if original file didn't end with a newline, strip out the newline here
+    if not original_lines[-1].endswith("\n"):
+        fixed_lines[-1] = fixed_lines[-1].rstrip("\n")
+
+    return fixed_lines
+
+
+def main():
+    if len(sys.argv) != 4:
+        print(f"Usage: {sys.argv[0]} <original_file> <broken.patch> <fixed.patch>")
+        sys.exit(1)
+
+    original = sys.argv[1]
+    patch_file = sys.argv[2]
+    output_file = sys.argv[3]
+
+    with open(patch_file, encoding='utf-8') as f:
+        patch_lines = f.readlines()
+
+    fixed_lines = fix_patch(patch_lines, original)
+
+    with open(output_file, 'w', encoding='utf-8') as f:
+        f.writelines(fixed_lines)
+
+    print(f"Fixed patch written to {output_file}")
+
+if __name__ == "__main__":
+    main()
+

patch_fixer-0.2.2.dist-info/METADATA

@@ -0,0 +1,57 @@
+Metadata-Version: 2.4
+Name: patch-fixer
+Version: 0.2.2
+Summary: Fixes erroneous git apply patches to the best of its ability.
+Maintainer-email: Alex Mueller <amueller474@gmail.com>
+License-Expression: Apache-2.0
+Project-URL: Homepage, https://github.com/ajcm474/patch-fixer
+Project-URL: Issues, https://github.com/ajcm474/patch-fixer/issues
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Developers
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
+Classifier: Programming Language :: Python :: 3 :: Only
+Classifier: Topic :: Software Development
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: GitPython
+Provides-Extra: test
+Requires-Dist: pytest; extra == "test"
+Requires-Dist: requests; extra == "test"
+Dynamic: license-file
+
+# patch-fixer
+So you asked an LLM to generate a code diff, tried to apply it with `git apply`, and got a bunch of malformed patch errors? Well fear no more, `patch_fixer.py` is here to save the day... more or less.
+
+## Installation
+```
+git clone https://github.com/ajcm474/patch-fixer.git
+cd patch-fixer
+pip install -e .
+```
+
+## Usage
+```
+python patch_fixer.py original broken.patch fixed.patch
+```
+where `original` is the file or directory you were trying to patch, 
+`broken.patch` is the malformed patch generated by the LLM, 
+and `fixed.patch` is the output file containing the (hopefully) fixed patch.
+
+## Testing
+Assuming you've already cloned the repo:
+```
+pip install -e .[test]
+pytest
+```
+Note that some tests currently fail as this project is in the early alpha stage.
+
+## License
+
+This is free and open source software, released under the Apache 2.0 License. See `LICENSE` for details.

patch_fixer-0.2.2.dist-info/RECORD

@@ -0,0 +1,7 @@
+patch_fixer/__init__.py,sha256=bSp2H7JW2kz1WrT0dqlg64kZpklKPp1FZlDhq2XJ2uU,34
+patch_fixer/patch_fixer.py,sha256=1Gf6LxQq3xhQVGeyD5W2-JKSJRgs9ty1C8F2QcEkyXQ,17469
+patch_fixer-0.2.2.dist-info/licenses/LICENSE,sha256=z8d0m5b2O9McPEK1xHG_dWgUBT6EfBDz6wA0F7xSPTA,11358
+patch_fixer-0.2.2.dist-info/METADATA,sha256=VCH9g8_yHZfoPJrG9ZpYB0GPSPK8pG8NfeZZVuowsSs,2004
+patch_fixer-0.2.2.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+patch_fixer-0.2.2.dist-info/top_level.txt,sha256=yyp3KjFgExJsrFsS9ZBCnkhb05xg8hPYhB7ncdpTOv0,12
+patch_fixer-0.2.2.dist-info/RECORD,,

patch_fixer-0.2.2.dist-info/WHEEL

@@ -0,0 +1,5 @@
+Wheel-Version: 1.0
+Generator: setuptools (80.9.0)
+Root-Is-Purelib: true
+Tag: py3-none-any
+

patch_fixer-0.2.2.dist-info/licenses/LICENSE

@@ -0,0 +1,202 @@
+
+                                 Apache License
+                           Version 2.0, January 2004
+                        http://www.apache.org/licenses/
+
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+
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+
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+      and distribution as defined by Sections 1 through 9 of this document.
+
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+
+      "You" (or "Your") shall mean an individual or Legal Entity
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patch_fixer-0.2.2.dist-info/top_level.txt

@@ -0,0 +1 @@
+patch_fixer