pastastore 1.10.2__py3-none-any.whl → 1.12.0__py3-none-any.whl

docs/conf.py

@@ -53,8 +53,7 @@ extensions = [
     "sphinx.ext.viewcode",
     "IPython.sphinxext.ipython_console_highlighting",  # lowercase didn't work
     "sphinx.ext.autosectionlabel",
-    "nbsphinx",
-    "nbsphinx_link",
+    "myst_nb",
 ]
 
 # Add any paths that contain templates here, relative to this directory.
@@ -114,102 +113,16 @@ html_theme_options = {
 # Add any paths that contain custom static files (such as style sheets) here,
 # relative to this directory. They are copied after the builtin static files,
 # so a file named "default.css" will overwrite the builtin "default.css".
-html_static_path = ["_static"]
+# html_static_path = ["_static"]
 
-# Custom sidebar templates, must be a dictionary that maps document names
-# to template names.
-#
-# The default sidebars (for documents that don't match any pattern) are
-# defined by theme itself.  Builtin themes are using these templates by
-# default: ``['localtoc.html', 'relations.html', 'sourcelink.html',
-# 'searchbox.html']``.
-#
-# html_sidebars = {}
-
-# -- Options for HTMLHelp output ---------------------------------------------
-
-# Output file base name for HTML help builder.
-htmlhelp_basename = "pastastoredoc"
-
-
-# -- Options for LaTeX output ------------------------------------------------
-
-latex_elements = {
-    # The paper size ('letterpaper' or 'a4paper').
-    #
-    # 'papersize': 'letterpaper',
-    # The font size ('10pt', '11pt' or '12pt').
-    #
-    # 'pointsize': '10pt',
-    # Additional stuff for the LaTeX preamble.
-    #
-    "preamble": r"""\makeatletter
-\def\UTFviii@defined#1{%
-  \ifx#1\relax
-      -%
-  \else\expandafter
-    #1%
-  \fi
-}
-
-\makeatother""",
-    # Latex figure (float) alignment
-    #
-    # 'figure_align': 'htbp',
-}
-
-# Grouping the document tree into LaTeX files. List of tuples
-# (source start file, target name, title,
-#  author, documentclass [howto, manual, or own class]).
-latex_documents = [
-    (
-        master_doc,
-        "pastastore.tex",
-        "pastastore Documentation",
-        "D.A. Brakenhoff",
-        "manual",
-    ),
-]
-
-
-# -- Options for manual page output ------------------------------------------
-
-# One entry per manual page. List of tuples
-# (source start file, name, description, authors, manual section).
-man_pages = [(master_doc, "pastastore", "pastastore Documentation", [author], 1)]
 
+# -- myst_nb options ------------------------------------------------------------------
 
-# -- Options for Texinfo output ----------------------------------------------
-
-# Grouping the document tree into Texinfo files. List of tuples
-# (source start file, target name, title, author,
-#  dir menu entry, description, category)
-texinfo_documents = [
-    (
-        master_doc,
-        "pastastore",
-        "pastastore Documentation",
-        author,
-        "pastastore",
-        "Tools for managing time series and Pastas models",
-        "Miscellaneous",
-    ),
-]
-
-
-# -- Options for Epub output -------------------------------------------------
-
-# Bibliographic Dublin Core info.
-epub_title = project
-
-# The unique identifier of the text. This can be a ISBN number
-# or the project homepage.
-#
-# epub_identifier = ''
-
-# A unique identification for the text.
-#
-# epub_uid = ''
+nb_execution_allow_errors = True  # Allow errors in notebooks, to see the error online
+nb_execution_mode = "off"
+nb_merge_streams = True
 
-# A list of files that should not be packed into the epub file.
-epub_exclude_files = ["search.html"]
+myst_enable_extensions = ["dollarmath", "amsmath"]
+myst_dmath_double_inline = True
+nb_render_markdown_format = "myst"  # Enable MyST markdown parsing in notebooks
+nb_render_text_lexer = "myst-ansi"  # Better rendering of ANSI output

pastastore/__init__.py

@@ -1,4 +1,6 @@
 # ruff: noqa: F401 D104
+import logging
+
 from pastastore import connectors, styling, util
 from pastastore.connectors import (
     ArcticDBConnector,
@@ -6,9 +8,11 @@ from pastastore.connectors import (
     PasConnector,
 )
 from pastastore.store import PastaStore
+from pastastore.util import get_color_logger
 from pastastore.version import __version__, show_versions
 
+logger = get_color_logger("INFO", logger_name="pastastore")
 try:
     from pastastore import extensions
 except ModuleNotFoundError:
-    print("Could not import extensions module. Update pastas to >=1.3.0!")
+    logging.warning("Could not import extensions module. Update pastas to >=1.3.0!")