passagemath-graphs 10.5.39__cp312-cp312-macosx_13_0_x86_64.whl → 10.5.44__cp312-cp312-macosx_13_0_x86_64.whl

{passagemath_graphs-10.5.39.dist-info → passagemath_graphs-10.5.44.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: passagemath-graphs
-Version: 10.5.39
+Version: 10.5.44
 Summary: passagemath: Graphs, posets, hypergraphs, designs, abstract complexes, combinatorial polyhedra, abelian sandpiles, quivers
 Author-email: The Sage Developers <sage-support@googlegroups.com>
 Maintainer: Matthias Köppe, passagemath contributors
@@ -29,9 +29,10 @@ Classifier: Topic :: Scientific/Engineering :: Mathematics
 Requires-Python: <3.14,>=3.9
 Description-Content-Type: text/x-rst
 Requires-Dist: gmpy2~=2.1.b999
-Requires-Dist: cysignals==1.12.0rc2
+Requires-Dist: cysignals!=1.12.0,>=1.11.2
 Requires-Dist: memory_allocator
-Requires-Dist: passagemath-categories~=10.5.39.0
+Requires-Dist: passagemath-categories~=10.5.44.0
+Requires-Dist: passagemath-environment~=10.5.44.0
 Provides-Extra: test
 Requires-Dist: passagemath-repl; extra == "test"
 Provides-Extra: benzene
@@ -42,6 +43,8 @@ Provides-Extra: buckygen
 Requires-Dist: passagemath-buckygen; extra == "buckygen"
 Provides-Extra: cliquer
 Requires-Dist: passagemath-cliquer; extra == "cliquer"
+Provides-Extra: cmr
+Requires-Dist: passagemath-cmr; extra == "cmr"
 Provides-Extra: gap
 Requires-Dist: passagemath-gap; extra == "gap"
 Provides-Extra: igraph
@@ -68,6 +71,9 @@ Provides-Extra: combinat
 Requires-Dist: passagemath-combinat; extra == "combinat"
 Provides-Extra: editor
 Requires-Dist: phitigra>=0.2.6; extra == "editor"
+Provides-Extra: groups
+Requires-Dist: passagemath-groups; extra == "groups"
+Requires-Dist: passagemath-graphs[nauty]; extra == "groups"
 Provides-Extra: homology
 Requires-Dist: passagemath-modules; extra == "homology"
 Provides-Extra: mip
@@ -83,7 +89,8 @@ Requires-Dist: passagemath-repl; extra == "repl"
 Provides-Extra: sat
 Requires-Dist: passagemath-combinat; extra == "sat"
 Provides-Extra: standard
-Requires-Dist: passagemath-graphs[combinat,databases,mip,modules,planarity,plot,polyhedra,rankwidth,repl]; extra == "standard"
+Requires-Dist: passagemath-graphs[combinat,databases,groups,mip,modules,planarity,polyhedra,rankwidth,repl]; extra == "standard"
+Requires-Dist: passagemath-plot[tachyon]; extra == "standard"
 
 =======================================================================================================================================================
  passagemath: Graphs, posets, hypergraphs, designs, abstract complexes, combinatorial polyhedra, abelian sandpiles, quivers
@@ -134,7 +141,7 @@ so compilation from source is triggered for those.
 About this pip-installable distribution package
 -----------------------------------------------
 
-This pip-installable package `passagemath-graphs` is a distribution of a part of the Sage Library.  It provides a small subset of the modules of the Sage library ("sagelib", `sagemath-standard`) for computations with graphs, posets, complexes, etc.
+This pip-installable package `passagemath-graphs` is a distribution of a part of the Sage Library.  It provides a small subset of the modules of the Sage library ("sagelib", `passagemath-standard`) for computations with graphs, posets, complexes, etc.
 
 It consists of over 170 first-party Python and Cython modules and uses the `Boost Graph Library <https://github.com/boostorg/graph>`_, with additional functionality from `NetworkX <https://networkx.github.io/>`_ and several other libraries.
 
@@ -181,32 +188,96 @@ A quick way to try it out interactively::
 Available as extras, from other distributions
 ---------------------------------------------
 
+Libraries
+~~~~~~~~~
+
+``pip install passagemath-graphs[benzene,buckygen,plantri]`` additionally make
+various graph generators available via `passagemath-benzene <https://pypi.org/project/passagemath-benzene/>`_, `passagemath-buckygen <https://pypi.org/project/passagemath-buckygen/>`_, and `passagemath-plantri <https://pypi.org/project/passagemath-plantri/>`_.
+
+``pip install passagemath-graphs[bliss]`` additionally installs `passagemath-bliss <https://pypi.org/project/passagemath-bliss/>`_ for the purpose
+of computing graph (iso/auto)morphisms.
+
+``pip install passagemath-graphs[cliquer]`` additionally installs `passagemath-cliquer <https://pypi.org/project/passagemath-cliquer/>`_
+
+``pip install passagemath-graphs[cmr]`` additionally installs `passagemath-cmr <https://pypi.org/project/passagemath-cmr/>`_ for recognition and decomposition algorithms
+for network matrices, totally unimodular matrices and regular matroids, series-parallel matroids, etc.
+
+``pip install passagemath-graphs[gap]`` additionally installs `passagemath-gap <https://pypi.org/project/passagemath-gap/>`_ for group-theoretic functionality.
+
+``pip install passagemath-graphs[igraph]`` additionally installs
+`igraph <https://python.igraph.org/en/stable/>`_::
+
+    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-graphs[igraph,test]" ipython
+    In [1]: from sage.all__sagemath_graphs import *
+
+    In [2]: ## Example depending on igraph goes here
+
+``pip install passagemath-graphs[mcqd]`` additionally installs `passagemath-mcqd <https://pypi.org/project/passagemath-mcqd/>`_
+
+``pip install passagemath-graphs[nauty]`` additionally installs `passagemath-nauty <https://pypi.org/project/passagemath-nauty/>`_ for computing
+automorphism groups of graphs and digraphs.
+
 ``pip install passagemath-graphs[networkx]`` additionally installs
-`NetworkX <https://networkx.github.io>`::
+`NetworkX <https://networkx.github.io>`__::
 
     $ pipx run --pip-args="--prefer-binary" --spec "passagemath-graphs[networkx,test]" ipython
     In [1]: from sage.all__sagemath_graphs import *
 
     In [2]: ## Example depending on networkx goes here
 
+``pip install passagemath-graphs[pari]`` additionally installs `passagemath-pari <https://pypi.org/project/passagemath-pari/>`_
 
-``pip install passagemath-graphs[igraph]`` additionally installs
-`igraph <https://python.igraph.org/en/stable/>`::
+``pip install passagemath-graphs[planarity]`` additionally installs `passagemath-planarity <https://pypi.org/project/passagemath-planarity/>`_ for planarity testing.
 
-    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-graphs[igraph,test]" ipython
+``pip install passagemath-graphs[rankwidth]`` additionally installs `passagemath-rankwidth <https://pypi.org/project/passagemath-rankwidth/>`_ for rank width and rank decompositions.
+
+``pip install passagemath-graphs[tdlib]`` additionally installs `passagemath-tdlib <https://pypi.org/project/passagemath-tdlib/>`_ for computing tree decompositions.
+
+
+Features
+~~~~~~~~
+
+``pip install passagemath-graphs[combinat]`` additionally installs `passagemath-combinat <https://pypi.org/project/passagemath-combinat/>`_
+
+``pip install passagemath-graphs[editor]`` additionally installs the interactive graph editor `phitigra <https://pypi.org/project/phitigra/>`_.
+
+``pip install passagemath-graphs[groups]`` additionally makes group-theoretic features
+available via `passagemath-gap <https://pypi.org/project/passagemath-gap/>`_, `passagemath-groups <https://pypi.org/project/passagemath-groups/>`_, and `passagemath-nauty <https://pypi.org/project/passagemath-nauty/>`_::
+
+    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-graphs[groups,test]" ipython
     In [1]: from sage.all__sagemath_graphs import *
 
-    In [2]: ## Example depending on igraph goes here
+    In [2]: g = Graph({
+                0: [1, 2],
+                1: [0, 2],
+                2: [0, 1, 3],
+                3: [2]
+            })
+
+    In [3]: aut = g.automorphism_group()
 
+    In [4]: print(aut.order())
+
+``pip install passagemath-graphs[homology]`` provides homological computations for abstract complexes via `passagemath-modules <https://pypi.org/project/passagemath-modules/>`_.
 
 ``pip install passagemath-graphs[mip]`` additionally makes the mixed-integer programming
-solver GLPK available::
+solver GLPK available via `passagemath-glpk <https://pypi.org/project/passagemath-glpk/>`_ and `passagemath-polyhedra <https://pypi.org/project/passagemath-polyhedra/>`_ (see there for other available solvers).::
 
     $ pipx run --pip-args="--prefer-binary" --spec "passagemath-graphs[mip,test]" ipython
     In [1]: from sage.all__sagemath_graphs import *
 
     In [2]: ## Example depending on MIP goes here
 
+``pip install passagemath-graphs[modules]`` additionally makes linear algebra features available via `passagemath-modules <https://pypi.org/project/passagemath-modules/>`_.
+
+``pip install passagemath-graphs[plot]`` additionally installs `passagemath-plot <https://pypi.org/project/passagemath-plot/>`_.
+
+``pip install passagemath-graphs[polyhedra]`` additionally installs `passagemath-polyhedra <https://pypi.org/project/passagemath-polyhedra/>`_.
+
+``pip install passagemath-graphs[sat]`` additionally provides SAT features via `passagemath-combinat <https://pypi.org/project/passagemath-combinat/>`_.
+
+``pip install passagemath-graphs[standard]`` installs all libraries and features related to graphs that
+are available in a standard installation of Sage.
 
 
 Development

{passagemath_graphs-10.5.39.dist-info → passagemath_graphs-10.5.44.dist-info}/RECORD

@@ -1,9 +1,9 @@
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-passagemath_graphs-10.5.39.dist-info/METADATA,sha256=0RBwXGw6fKRJDTMKpKAE6EmQgr01YFUbOrHSvGQLn28,9501
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-sage/all__sagemath_graphs.py,sha256=Az4kzTDShM1H7Ia4kpAbLF2MvAtsbOWwJACGSzPqOT8,752
+sage/all__sagemath_graphs.py,sha256=q3QFFFTkeijGtFSjZtlnAko3Mrnr8fK-m5Yghw2VQyM,837
 sage/topology/simplicial_complex_catalog.py,sha256=JGHpK2P6JilXIbnSIanraJTST2SQaHSqBWg8ZAlqhFU,4396
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 sage/combinat/shard_order.py,sha256=hULsSgJS39xMwEe8UrNCkoTZii41V-cROxE0PAvsE8k,8060
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 sage/ext_data/kenzo/CP4.txt,sha256=WXb63Qce3f9Z3Q6K3_zkI0W4-cHBM93XMn7K5bNQD3U,640878
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@@ -174,32 +174,32 @@ sage/graphs/trees.pyx,sha256=fxCGm1lmkjsaLSg4L0IbnA_gMzYIWhPwbU07_C8e5UA,8733
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 sage/graphs/orientations.py,sha256=ZMTASPviyKb4t2swDdTajNeGfemG3vbVmU9IwRUmCzU,53818
 sage/graphs/comparability.pyx,sha256=k6yGZH9qZbabyaIGPQBGY75Tmsl8EaT-_XyTgPtKPRI,30696
-sage/graphs/edge_connectivity.cpython-312-darwin.so,sha256=KTTMoHBeTF_ep8RIStYtnjHExRBNPLK6VV07tSvpw2g,203024
+sage/graphs/edge_connectivity.cpython-312-darwin.so,sha256=hJ_q4Ts4X4eOoTuoEElCfeS2zzU1L4er1NgONyvpO7o,202992
 sage/graphs/generators/degree_sequence.py,sha256=oN9BFV3aC3g0Im_L9v1bx4aBzEf2qFRc8IHpxMVLkF8,8735
 sage/graphs/generators/distance_regular.pyx,sha256=qnYVaHCpc7L4m2Z1pXuEg98tyJ2ED73bNky5_Fk9ASI,96145
 sage/graphs/generators/smallgraphs.py,sha256=Kwqzi6iXl36QRVJ8L9-YQcuRjIMlAVhJQpMDdXmwIBY,201988
 sage/graphs/generators/families.py,sha256=Ex6zqwclb1OXLs7uzuLaBzrWmiephaD0nwKSR5jYxGY,164644
 sage/graphs/generators/all.py,sha256=hFccVjiRkLdUqyJcwgIkR5OUo1DvjVPZwsCZIWtgEXM,45
 sage/graphs/generators/random.py,sha256=Hwnid8-_Hx9N8kA6i9Vpuqlw-l-5cemVqUjo7qSCpVw,92229
-sage/graphs/generators/distance_regular.cpython-312-darwin.so,sha256=3EjbCnrezCWCaNaIruF7LQKyNB23cXg6rNfAFCm77rQ,950432
+sage/graphs/generators/distance_regular.cpython-312-darwin.so,sha256=YkiC0eLBgsHdUqUS3zL2Ff_k7wtuSsrKvGDyMsSTZv4,950408
 sage/graphs/generators/chessboard.py,sha256=AYh9NIWZcueME7xiSL3MUdEa9O8O_NTDXh01cHfP8Js,20682
 sage/graphs/generators/basic.py,sha256=aSkIJvPJ_eD5pG-2Uf5jh5qxEv8Tbe7o3vwDLiisSYc,61441
 sage/graphs/generators/platonic_solids.py,sha256=v3TMsnK2gI0vnhX9IxP3IsTWqw6GpYQdk6xZk9WEJG0,10134
 sage/graphs/generators/intersection.py,sha256=N3C3dLzBjL_Jeii1aU_Xm3O78yMLvZoAY1Y6Egu4MxA,20349
 sage/graphs/generators/classical_geometries.py,sha256=3xoCUEGmShNiGwvc5eKvFbLgeQH-lWM23Iv2uYVtp5A,63415
 sage/graphs/generators/world_map.py,sha256=YZ992gxxy6kXKaWvbXqG2tfxk5AaHw3a0t991pskPlY,34547
-sage/graphs/graph_decompositions/bandwidth.cpython-312-darwin.so,sha256=b2dUogiPCAB0Q1M_62nAdbWQ9RhKTiTdBLeaAaSDzsg,121008
+sage/graphs/graph_decompositions/bandwidth.cpython-312-darwin.so,sha256=zg-2W6zJE4vP9r90W2drH7THPuCnSGisNrZOCyJS59U,120976
 sage/graphs/graph_decompositions/vertex_separation.pyx,sha256=nF-RwfUUZZ-JHi-iMj7D2ibAsrbmLQuEpGRXqN7_DTQ,74865
-sage/graphs/graph_decompositions/modular_decomposition.cpython-312-darwin.so,sha256=iZKSo1D-ilD3b8zrHd9JLVDPg3lvKGlzGCN8bDKlsCU,561824
+sage/graphs/graph_decompositions/modular_decomposition.cpython-312-darwin.so,sha256=eD93x7MgM4AFppGAusbGMCToDghv1SweIPRKN-CwbMI,561792
 sage/graphs/graph_decompositions/fast_digraph.pyx,sha256=RwR3geuP8uwPxNlKfHJQHvPsf3_z6DvwQEWyUEf1Df8,7389
 sage/graphs/graph_decompositions/cutwidth.pyx,sha256=ah8ysfGRlDw3UTeG9uPcQuVAjs0SfaYSnRdJ3z-RvdA,28601
 sage/graphs/graph_decompositions/tree_decomposition.pxd,sha256=dxfbHIMapSvsj67OLVBfLtvAYhWvDNSwmbmqmrvEYZg,555
@@ -208,28 +208,28 @@ sage/graphs/graph_decompositions/all.py,sha256=hFccVjiRkLdUqyJcwgIkR5OUo1DvjVPZw
 sage/graphs/graph_decompositions/bandwidth.pyx,sha256=9BvA6v6LheIIqwtkvbendaO_aux-ROfaMBcAM4aZFd0,15576
 sage/graphs/graph_decompositions/modular_decomposition.pyx,sha256=EkuXojAhXF53MXTiat63_EWdglqfodFZQiZk5dHV7-E,51818
 sage/graphs/graph_decompositions/modular_decomposition.pxd,sha256=SAqgLApPT4pa_e2XpZ7us9PhDV34y5cTZB7YzP_lbkI,1100
-sage/graphs/graph_decompositions/fast_digraph.cpython-312-darwin.so,sha256=xBvDRFgAlersBPznmgr-TrqiaonJR9CgxMpZo8LpNfY,102480
+sage/graphs/graph_decompositions/fast_digraph.cpython-312-darwin.so,sha256=wwaMwl8twYe48Mh3iYBo9zuypDDHHCwzn-CCjpHXC40,102456
 sage/graphs/graph_decompositions/graph_products.pyx,sha256=XcghL4BzFWPPNmpNIKSC37zzBwNMmmaNqnEAtXnP0hw,17139
 sage/graphs/graph_decompositions/clique_separators.pyx,sha256=nZpjLIQYuRND2eu1jvvawGo19_WSFROk8I1NRhHzhCU,22876
 sage/graphs/graph_decompositions/slice_decomposition.pxd,sha256=OawVDRv8wbwIP6rbSZHGZQUVF31TNw3fbIXbE2q9XyA,602
-sage/graphs/graph_decompositions/clique_separators.cpython-312-darwin.so,sha256=39jdrrag1SVSgOIbTE6UHXkmjcoC0BgKNsNiasjgstc,251856
+sage/graphs/graph_decompositions/clique_separators.cpython-312-darwin.so,sha256=2ckeEHTiqfDnAD3wt6w72OJPucBGgdGY23yQ1bBou9o,251824
 sage/graphs/graph_decompositions/tree_decomposition.pyx,sha256=IWrChlzZXjEKscgZcbRr4mhvODbAuAbZoHhSNxx-3Dw,73665
-sage/graphs/graph_decompositions/tree_decomposition.cpython-312-darwin.so,sha256=fOBP8cPNLIXXrN1vSFRa6UerJDpPwpQXRZ4VrhJVSoA,580512
-sage/graphs/graph_decompositions/cutwidth.cpython-312-darwin.so,sha256=pSQyT7boJCds04fRU8r7VarEPq_I9-ZNDkHyluzc7rM,210048
-sage/graphs/graph_decompositions/vertex_separation.cpython-312-darwin.so,sha256=gYdPF1YO1Q_WolpIXRO_MGU8zOtTEW5l4Suy4uQVkmU,364080
+sage/graphs/graph_decompositions/tree_decomposition.cpython-312-darwin.so,sha256=hqTSNOr0EObqGuUYlDZWiZdoXENFKu2lUsov2v9c3uU,580480
+sage/graphs/graph_decompositions/cutwidth.cpython-312-darwin.so,sha256=2_eLudhe2fJakUhVeW2sJr5MYtB16LKoq0T6try8xgA,210024
+sage/graphs/graph_decompositions/vertex_separation.cpython-312-darwin.so,sha256=Na-ed7uyL9OhwJ594km3WY3kJtl7FDwSALfpDR9jAFE,364048
 sage/graphs/graph_decompositions/fast_digraph.pxd,sha256=vfxjVz_M8l9rkauaJpXkW1_ubTM3mqUdEjUwlqdD4PQ,343
 sage/graphs/graph_decompositions/vertex_separation.pxd,sha256=kuVp6HcFIRCamGKOy_Z_Qlzb2W_GlrdBRL4b44jdLsw,200
-sage/graphs/graph_decompositions/slice_decomposition.cpython-312-darwin.so,sha256=Y1Px3kBrzyUay-XiyMRa9qiBwUPR5vNOmsXTs6pXZ5U,302144
-sage/graphs/graph_decompositions/graph_products.cpython-312-darwin.so,sha256=UtjlsE0wyru1M5pRaXnF5YzFdoLBOxYj3Y2XGOc7Idc,209376
-sage/graphs/base/static_dense_graph.cpython-312-darwin.so,sha256=ybXHr48duFTNXfmXLOk3iKBxBMM6JUKKavOlVRFxzIY,286560
+sage/graphs/graph_decompositions/slice_decomposition.cpython-312-darwin.so,sha256=jBw0PQC6t0PF6GsSi0mz-kVeC_a3ph6qSQ4xNG1uSFA,302128
+sage/graphs/graph_decompositions/graph_products.cpython-312-darwin.so,sha256=5-5NSFTJBsWclLTyLvWK2t5BIbRTFGVoSFVj43S28xA,209344
+sage/graphs/base/static_dense_graph.cpython-312-darwin.so,sha256=_Ir22_Dt1hnN6BLT5RoLj3riRXFALfrUY2SxOqDgwNo,286544
 sage/graphs/base/static_sparse_graph.pyx,sha256=bnMe1AinoGjIsIlsJGeCCRuihiDtZkGQmG4kh41hvqM,49908
-sage/graphs/base/c_graph.cpython-312-darwin.so,sha256=7Mc8frMYnQvbmknga5rbL0OvBuTkmE-_Q86gEhteuic,686928
+sage/graphs/base/c_graph.cpython-312-darwin.so,sha256=lp5hur1-wB9vYFHp_23Rxlinw_0tk9xeVMRPLm2crH4,686912
 sage/graphs/base/boost_graph.pxd,sha256=K3GCaIXjsmhwgTzlSntrHi3IB1t2vJpOzSS7FQGlxEo,3655
-sage/graphs/base/sparse_graph.cpython-312-darwin.so,sha256=2fCEj7qqDnHMZVJqhDGWbb8dDxwSxfE19dqlpvQMoCY,251904
+sage/graphs/base/sparse_graph.cpython-312-darwin.so,sha256=mPY-MufmkGftliQIZ94MwUu3dIAhHRLxHYx9n_wRWps,251872
 sage/graphs/base/c_graph.pyx,sha256=Lr1cxK2A5mtR0EIQmYIljc2OgYgiBeRn5Rw0mC_k0x8,179656
-sage/graphs/base/static_sparse_graph.cpython-312-darwin.so,sha256=KjlMb6VQVbG0N-O1sIeLxerjy5pXSsDAEEUMHWGoXik,236592
+sage/graphs/base/static_sparse_graph.cpython-312-darwin.so,sha256=E7Z3RlWCMvkVoyVR8hRKlMYh2apou7I_Hn_w2kmQ12M,236560
 sage/graphs/base/static_sparse_backend.pyx,sha256=Gu5fS7Jq-p2jfNuU-QwV60YsUtyc2jVlZ9h9hWCM9eE,55323
-sage/graphs/base/boost_graph.cpython-312-darwin.so,sha256=vsdt4U53uLi3DffYRxqoWCorvHpsIQyLuOVOgMkL_kI,965560
+sage/graphs/base/boost_graph.cpython-312-darwin.so,sha256=SiC2chLXcvWaOqYhWqQc7tZ4YH9OApcdUULf7u4Apho,965528
 sage/graphs/base/sparse_graph.pxd,sha256=O0oPH_Z1-fsxPK-mKMnNq-OL5cE0GcDILqDj-ajytlk,3485
 sage/graphs/base/dense_graph.pyx,sha256=HfZU7L2IScsA8_a6VCcs8rM6aWRkYTSz8oRhJWHX5mY,24167
 sage/graphs/base/graph_backends.pxd,sha256=DNjOnDRc2RPV-NtCHuoliKpNfJHC3aK7l0RifUR7DSY,150
@@ -241,12 +241,12 @@ sage/graphs/base/dense_graph.pxd,sha256=VltYtRdTHhfpXG11C-lfMPSlm57dyP4Ot3E3FOzl
 sage/graphs/base/graph_backends.pyx,sha256=vl_Cs6xcJJSDlHEfSO55bUQMSziLY3WYnsOza3oK13o,24526
 sage/graphs/base/static_sparse_backend.pxd,sha256=DbBBsONS0Utp1szKGQaeTpoqiNC23XDaL9tnMrDAxvI,903
 sage/graphs/base/sparse_graph.pyx,sha256=dNMlc3m2Vl7fXCz5c7a-rse4boVsMSl3AevHmF0AIo0,56300
-sage/graphs/base/static_sparse_backend.cpython-312-darwin.so,sha256=9T1E2N8Mq7TAKj_i2nM998AmAOTcvZVVrpFGgsXL0rE,334288
-sage/graphs/base/dense_graph.cpython-312-darwin.so,sha256=b133Rkpm43WBhVne1s_L2lElWfyMh9uetjFlbRNQtAc,190640
+sage/graphs/base/static_sparse_backend.cpython-312-darwin.so,sha256=3Y6TVDO7kOxtkEsc30ZvIb6mCnIu9u7UNVse2fZkJCQ,334256
+sage/graphs/base/dense_graph.cpython-312-darwin.so,sha256=wewfkactRRBqhFp3PC9ArXW3evwlbAOP-axTncljoyM,190608
 sage/graphs/base/c_graph.pxd,sha256=pUsZ48m4XXx4fq8fRWeeaFkM0gzX0r63Kkw7L0IJdfk,4281
 sage/graphs/base/boost_graph.pyx,sha256=mWfPc01Gtyy3YDQ93CcOWZMhsUXN5q2BiyKt4wls-c8,111074
 sage/graphs/base/static_sparse_graph.pxd,sha256=YYCH7F6h1OteiFLfleAb57CCN-gx42n3W_9fzh8avkA,1500
-sage/graphs/base/graph_backends.cpython-312-darwin.so,sha256=Cug82vRaCcPH0q0wJ2yOF7ePmsvh0tezdshZ3JitrBs,165552
+sage/graphs/base/graph_backends.cpython-312-darwin.so,sha256=6Rzj88vSbjWva-bcOXvizCeW8D-LqarS39zzKfAqfRI,165536
 sage/knots/link.py,sha256=L6vA6oqMri3ZD5xY8zclLwuqywrzoWbfpVTskcyBtkk,177868
 sage/knots/free_knotinfo_monoid.py,sha256=IyaKmc4kQclQoAe9loqp9Cq2Ny7BoQXwjPFn_QYwMoY,19713
 sage/knots/knotinfo.py,sha256=ACmrGn9_t6Ff3y5xaTDLO8JJS0_Wkfb2qItWf6Nu9mI,101893

{passagemath_graphs-10.5.39.dist-info → passagemath_graphs-10.5.44.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (80.8.0)
+Generator: setuptools (80.9.0)
 Root-Is-Purelib: false
 Tag: cp312-cp312-macosx_13_0_x86_64
 Generator: delocate 0.13.0

sage/all__sagemath_graphs.py

@@ -11,6 +11,11 @@ This distribution makes the following feature available::
 
 from .all__sagemath_categories import *
 
+try:  # extra
+    from sage.all__sagemath_gap import *
+except ImportError:
+    pass
+
 try:  # extra
     from sage.all__sagemath_modules import *
 except ImportError:

sage/combinat/abstract_tree.py

@@ -1,6 +1,6 @@
 # sage_setup: distribution = sagemath-graphs
 r"""
-Abstract Recursive Trees
+Abstract recursive trees
 
 The purpose of this class is to help implement trees with a specific structure
 on the children of each node. For instance, one could want to define a tree in

sage/combinat/binary_tree.py

@@ -1,6 +1,6 @@
 # sage_setup: distribution = sagemath-graphs
 """
-Binary Trees
+Binary trees
 
 This module deals with binary trees as mathematical (in particular immutable)
 objects.

sage/combinat/cluster_algebra_quiver/all.py

@@ -2,7 +2,7 @@
 r"""
 Cluster algebras and quivers
 
-- A compendium on the cluster algebra and quiver package in Sage [MS2011]_
+A compendium on the cluster algebra and quiver package in Sage [MS2011]_
 
 - :ref:`sage.combinat.cluster_algebra_quiver.quiver_mutation_type`
 - :ref:`sage.combinat.cluster_algebra_quiver.quiver`

sage/combinat/cluster_algebra_quiver/cluster_seed.py

@@ -1,28 +1,34 @@
 # sage_setup: distribution = sagemath-graphs
 # sage.doctest: needs sage.graphs sage.modules sage.libs.singular
 r"""
-ClusterSeed
+Cluster seeds
 
-A *cluster seed* is a pair `(B,\mathbf{x})` with `B` being a *skew-symmetrizable* `(n+m) \times n` *-matrix*
-and with `\mathbf{x}` being an `n`-tuple of *independent elements* in the field of rational functions in `n` variables.
+A *cluster seed* is a pair `(B,\mathbf{x})` with `B` being a
+*skew-symmetrizable* `(n+m) \times n` *-matrix* and with `\mathbf{x}` being an
+`n`-tuple of *independent elements* in the field of rational functions in `n`
+variables.
 
 For the compendium on the cluster algebra and quiver package see
 [MS2011]_.
 
-AUTHORS:
-
-- Gregg Musiker: Initial Version
-- Christian Stump: Initial Version
-- Aram Dermenjian (2015-07-01): Updating ability to not rely solely on clusters
-- Jesse Levitt (2015-07-01): Updating ability to not rely solely on clusters
-
 REFERENCES:
 
 - [FZ2007]_
-
 - [BDP2013]_
 
-.. SEEALSO:: For mutation types of cluster seeds, see :meth:`sage.combinat.cluster_algebra_quiver.quiver_mutation_type.QuiverMutationType`. Cluster seeds are closely related to :meth:`sage.combinat.cluster_algebra_quiver.quiver.ClusterQuiver`.
+.. SEEALSO::
+
+    For mutation types of cluster seeds, see
+    :meth:`sage.combinat.cluster_algebra_quiver.quiver_mutation_type.QuiverMutationType`.
+    Cluster seeds are closely related to
+    :meth:`sage.combinat.cluster_algebra_quiver.quiver.ClusterQuiver`.
+
+AUTHORS:
+
+- Gregg Musiker: initial version
+- Christian Stump: initial version
+- Aram Dermenjian (2015-07-01): updating ability to not rely solely on clusters
+- Jesse Levitt (2015-07-01): updating ability to not rely solely on clusters
 """
 
 # ****************************************************************************

sage/combinat/cluster_algebra_quiver/interact.py

@@ -1,4 +1,8 @@
 # sage_setup: distribution = sagemath-graphs
+r"""
+Interactive window for cluster seed mutations
+"""
+
 import ipywidgets as widgets
 from sage.misc.latex import latex
 from sage.repl.rich_output.pretty_print import pretty_print

sage/combinat/designs/MOLS_handbook_data.py

@@ -1,11 +1,11 @@
 # sage_setup: distribution = sagemath-graphs
 r"""
-Known lower bounds on the number of Mutually Orthogonal Latin
-Squares (MOLS) of a given size.
+Bounds on the number of mutually orthogonal Latin squares
 
-This module consists (almost) entirely of an internal, constant tuple
-of python integers corresponding to Table 3.87 in the Handbook of
-Combinatorial Designs, 2nd edition, by Colbourn and Dinitz. One public
+This module contains known lower bounds on the number of mutually orthogonal
+Latin squares (MOLS) of a given size, and consists (almost) entirely of an
+internal, constant tuple of Python integers corresponding to Table 3.87 in the
+Handbook of Combinatorial Designs, 2nd edition, by Colbourn and Dinitz. One public
 function, :func:`lower_bound`, is provided to access it.
 
 Make sure we have all of the entries::

sage/combinat/designs/bibd.py

@@ -1,6 +1,6 @@
 # sage_setup: distribution = sagemath-graphs
 r"""
-Balanced Incomplete Block Designs (BIBD)
+Balanced incomplete block designs (BIBD)
 
 This module gathers everything related to Balanced Incomplete Block Designs. One can build a
 BIBD (or check that it can be built) with :func:`balanced_incomplete_block_design`::

sage/combinat/designs/covering_array.py

@@ -1,13 +1,13 @@
 # sage_setup: distribution = sagemath-graphs
 r"""
-Covering Arrays (CA)
+Covering arrays
 
-A Covering Array, denoted `CA(N;t,k,v)`, is an `N` by `k` array with
+A covering array, denoted `CA(N;t,k,v)`, is an `N` by `k` array with
 entries from a set of `v` elements with the property that in every
 selection of `t` columns, every sequence of `t` elements appears in at
 least one row.
 
-An Orthogonal Array, denoted `OA(N;t,k,v)` is a covering array with the
+An orthogonal array, denoted `OA(N;t,k,v)` is a covering array with the
 property that every sequence of `t`-elements appears in exactly one row.
 (See :mod:`sage.combinat.designs.orthogonal_arrays`).
 

sage/combinat/designs/covering_design.py

@@ -49,7 +49,6 @@ Classes and methods
 from urllib.request import urlopen
 from ssl import create_default_context as default_context
 
-from sage.misc.sage_eval import sage_eval
 from sage.structure.sage_object import SageObject
 from sage.rings.rational import Rational
 from sage.arith.misc import binomial
@@ -513,6 +512,8 @@ def best_known_covering_design_www(v, k, t, verbose=False):
     A :exc:`ValueError` is raised if the ``(v, k, t)`` parameters are not
     found in the database.
     """
+    from sage.misc.sage_eval import sage_eval
+
     v = int(v)
     k = int(k)
     t = int(t)

sage/combinat/designs/difference_matrices.py

@@ -1,7 +1,7 @@
 # sage_setup: distribution = sagemath-graphs
 # sage.doctest: needs sage.rings.finite_rings
 r"""
-Difference Matrices
+Difference matrices
 
 This module gathers code related to difference matrices. One can build those
 objects (or know if they can be built) with :func:`difference_matrix`::

sage/combinat/designs/ext_rep.py

@@ -1,13 +1,13 @@
 # sage_setup: distribution = sagemath-graphs
 r"""
-External Representations of Block Designs
+External representations of block designs
 
-The "ext_rep" module is an API to the abstract tree represented by
+This module is an API to the abstract tree represented by
 an XML document containing the External Representation of a list of
 block designs. The module also provides the related I/O operations for
-reading/writing ext-rep files or data. The parsing is based on expat.
+reading/writing ``ext-rep`` files or data. The parsing is based on expat.
 
-This is a modified form of the module ext_rep.py (version 0.8)
+This is a modified form of the module ``ext_rep.py`` (version 0.8)
 written by Peter Dobcsanyi [Do2009]_ peter@designtheory.org.
 
 .. TODO::
@@ -16,12 +16,9 @@ written by Peter Dobcsanyi [Do2009]_ peter@designtheory.org.
     information about things like automorphism groups, transitivity, cycle type
     representatives, etc, but none of this data is made available through the
     current implementation.
-
-Functions
----------
 """
 
-###########################################################################
+# ***********************************************************************
 # This software is released under the terms of the GNU General Public
 # License, version 2 or above (your choice). For details on licensing,
 # see the accompanying documentation.
@@ -29,9 +26,9 @@ Functions
 # This is a modified form of the module ext_rep.py (version 0.8)
 # written by Peter Dobcsanyi peter@designtheory.org.
 #
-# Copyright 2004 by Peter Dobcsanyi peter@designtheory.org, and copyright
-# 2009 Carlo Hamalainen carlo.hamalainen@gmail.com
-###########################################################################
+# Copyright 2004 Peter Dobcsanyi peter@designtheory.org
+#           2009 Carlo Hamalainen carlo.hamalainen@gmail.com
+# ***********************************************************************
 
 import sys
 import xml.parsers.expat
@@ -598,7 +595,6 @@ def _encode_attribute(string):
         sage: _encode_attribute('E')
         'E'
     """
-
     if pattern_integer.match(string):
         return int(string)
     elif pattern_decimal.match(string):
@@ -611,8 +607,7 @@ class XTree:
     '''
     A lazy class to wrap a rooted tree representing an XML document.
     The tree's nodes are tuples of the structure:
-
-        (name, {dictionary of attributes}, [list of children])
+    (name, {dictionary of attributes}, [list of children])
 
     Methods and services of an XTree object ``t``:
 

sage/combinat/designs/group_divisible_designs.py

@@ -1,7 +1,7 @@
 # sage_setup: distribution = sagemath-graphs
 # sage.doctest: needs sage.rings.finite_rings
 r"""
-Group-Divisible Designs (GDD)
+Group-divisible designs (GDD)
 
 This module gathers everything related to Group-Divisible Designs. The
 constructions defined here can be accessed through ``designs.<tab>``::

sage/combinat/designs/latin_squares.py

@@ -1,7 +1,7 @@
 # sage_setup: distribution = sagemath-graphs
 # sage.doctest: needs sage.modules
 r"""
-Mutually Orthogonal Latin Squares (MOLS)
+Mutually orthogonal Latin squares (MOLS)
 
 The main function of this module is :func:`mutually_orthogonal_latin_squares`
 and can be can be used to generate MOLS (or check that they exist)::

sage/combinat/designs/resolvable_bibd.py

@@ -1,7 +1,7 @@
 # sage_setup: distribution = sagemath-graphs
 # sage.doctest: needs sage.rings.finite_rings
 r"""
-Resolvable Balanced Incomplete Block Design (RBIBD)
+Resolvable balanced incomplete block design (RBIBD)
 
 This module contains everything related to resolvable Balanced Incomplete Block
 Designs. The constructions implemented here can be obtained through the

sage/combinat/designs/steiner_quadruple_systems.py

@@ -1,6 +1,6 @@
 # sage_setup: distribution = sagemath-graphs
 r"""
-Steiner Quadruple Systems
+Steiner quadruple systems
 
 A Steiner Quadruple System on `n` points is a family `SQS_n \subset \binom {[n]}
 4` of `4`-sets, such that any set `S\subset [n]` of size three is a subset of

sage/combinat/finite_state_machine_generators.py

@@ -1,9 +1,9 @@
 # sage_setup: distribution = sagemath-graphs
 # sage.doctest: needs sage.graphs sage.modules
 r"""
-Common Automata and Transducers (Finite State Machines Generators)
+Common automata and transducers (finite state machines generators)
 
-Automata and Transducers in Sage can be built through the
+Automata and transducers in Sage can be built through the
 :class:`automata <AutomatonGenerators>`
 and :class:`transducers <TransducerGenerators>` objects, respectively.
 It contains generators for

sage/combinat/graph_path.py

@@ -1,8 +1,8 @@
 # sage_setup: distribution = sagemath-graphs
 r"""
-Paths in Directed Acyclic Graphs
+Paths in directed acyclic graphs
 """
-#*****************************************************************************
+# ****************************************************************************
 #       Copyright (C) 2007 Mike Hansen <mhansen@gmail.com>,
 #
 #  Distributed under the terms of the GNU General Public License (GPL)
@@ -15,7 +15,7 @@ Paths in Directed Acyclic Graphs
 #  The full text of the GPL is available at:
 #
 #                  http://www.gnu.org/licenses/
-#*****************************************************************************
+# ****************************************************************************
 
 from sage.categories.finite_enumerated_sets import FiniteEnumeratedSets
 from sage.structure.parent import Parent

sage/combinat/ordered_tree.py

@@ -1,6 +1,6 @@
 # sage_setup: distribution = sagemath-graphs
 """
-Ordered Rooted Trees
+Ordered rooted trees
 
 AUTHORS:
 

sage/combinat/posets/cartesian_product.py

@@ -1,6 +1,6 @@
 # sage_setup: distribution = sagemath-graphs
 """
-Cartesian products of Posets
+Cartesian products of posets
 
 AUTHORS:
 

sage/combinat/posets/d_complete.py

@@ -1,7 +1,7 @@
 # sage_setup: distribution = sagemath-graphs
 # sage.doctest: needs sage.combinat sage.modules
 r"""
-D-Complete Posets
+D-complete posets
 
 AUTHORS:
 

sage/combinat/posets/forest.py

@@ -1,6 +1,6 @@
 # sage_setup: distribution = sagemath-graphs
 r"""
-Forest Posets
+Forest posets
 
 AUTHORS:
 

sage/combinat/posets/incidence_algebras.py

@@ -1,7 +1,7 @@
 # sage_setup: distribution = sagemath-graphs
 # sage.doctest: needs sage.modules
 r"""
-Incidence Algebras
+Incidence algebras
 """
 # ****************************************************************************
 #       Copyright (C) 2014 Travis Scrimshaw <tscrim at ucdavis.edu>

sage/combinat/posets/linear_extensions.py

@@ -1,16 +1,6 @@
 # sage_setup: distribution = sagemath-graphs
 r"""
-Linear Extensions of Posets
-
-This module defines two classes:
-
-- :class:`LinearExtensionOfPoset`
-- :class:`LinearExtensionsOfPoset`
-- :class:`LinearExtensionsOfPosetWithHooks`
-- :class:`LinearExtensionsOfForest`
-
-Classes and methods
--------------------
+Linear extensions of posets
 """
 # ****************************************************************************
 #       Copyright (C) 2012 Anne Schilling <anne at math.ucdavis.edu>

sage/combinat/posets/moebius_algebra.py

@@ -1,7 +1,7 @@
 # sage_setup: distribution = sagemath-graphs
 # sage.doctest: needs sage.modules
 r"""
-Möbius Algebras
+Möbius algebras
 """
 # ****************************************************************************
 #       Copyright (C) 2014 Travis Scrimshaw <tscrim at ucdavis.edu>,

sage/combinat/rooted_tree.py

@@ -1,6 +1,6 @@
 # sage_setup: distribution = sagemath-graphs
 r"""
-Rooted (Unordered) Trees
+Rooted (unordered) trees
 
 AUTHORS:
 

sage/graphs/graph_list.py

@@ -19,9 +19,6 @@ AUTHORS:
 # ****************************************************************************
 
 
-from sage.misc.misc import try_read
-
-
 def from_whatever(data):
     r"""
     Return a list of Sage Graphs, given a list of whatever kind of data.
@@ -78,6 +75,8 @@ def _from_whatever(data, fmt=None):
     if isinstance(data, str):
         lines = data.splitlines()
     else:
+        from sage.misc.misc import try_read
+
         lines = try_read(data, splitlines=True)
 
         if lines is not None and fmt is None:

sage/sandpiles/sandpile.py

@@ -339,7 +339,6 @@ from sage.graphs.digraph import DiGraph
 from sage.graphs.graph import Graph
 from sage.misc.functional import det, denominator
 from sage.misc.lazy_import import lazy_import
-from sage.misc.misc import exists
 from sage.misc.misc_c import prod
 from sage.misc.temporary_file import tmp_filename
 from sage.rings.integer import Integer
@@ -1542,7 +1541,7 @@ class Sandpile(DiGraph):
         else:
             rec = list(self.recurrents())
             for r in self.recurrents():
-                if exists(rec, lambda x: r > x)[0]:
+                if any(r > x for x in rec):
                     rec.remove(r)
         self._min_recurrents = rec