passagemath-graphs 10.5.34__cp312-cp312-macosx_13_0_x86_64.whl → 10.5.43__cp312-cp312-macosx_13_0_x86_64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {passagemath_graphs-10.5.34.dist-info → passagemath_graphs-10.5.43.dist-info}/METADATA +83 -13
- {passagemath_graphs-10.5.34.dist-info → passagemath_graphs-10.5.43.dist-info}/RECORD +89 -84
- {passagemath_graphs-10.5.34.dist-info → passagemath_graphs-10.5.43.dist-info}/WHEEL +1 -1
- sage/all__sagemath_graphs.py +5 -0
- sage/combinat/abstract_tree.py +1 -1
- sage/combinat/binary_tree.py +1 -1
- sage/combinat/cluster_algebra_quiver/all.py +1 -1
- sage/combinat/cluster_algebra_quiver/cluster_seed.py +18 -12
- sage/combinat/cluster_algebra_quiver/interact.py +4 -0
- sage/combinat/designs/MOLS_handbook_data.py +5 -5
- sage/combinat/designs/bibd.py +1 -1
- sage/combinat/designs/covering_array.py +3 -3
- sage/combinat/designs/covering_design.py +2 -1
- sage/combinat/designs/designs_pyx.cpython-312-darwin.so +0 -0
- sage/combinat/designs/difference_matrices.py +1 -1
- sage/combinat/designs/evenly_distributed_sets.cpython-312-darwin.so +0 -0
- sage/combinat/designs/ext_rep.py +9 -14
- sage/combinat/designs/gen_quadrangles_with_spread.cpython-312-darwin.so +0 -0
- sage/combinat/designs/group_divisible_designs.py +1 -1
- sage/combinat/designs/incidence_structures.py +8 -8
- sage/combinat/designs/latin_squares.py +1 -1
- sage/combinat/designs/orthogonal_arrays_find_recursive.cpython-312-darwin.so +0 -0
- sage/combinat/designs/resolvable_bibd.py +1 -1
- sage/combinat/designs/steiner_quadruple_systems.py +1 -1
- sage/combinat/designs/subhypergraph_search.cpython-312-darwin.so +0 -0
- sage/combinat/finite_state_machine_generators.py +2 -2
- sage/combinat/graph_path.py +3 -3
- sage/combinat/ordered_tree.py +1 -1
- sage/combinat/posets/cartesian_product.py +1 -1
- sage/combinat/posets/d_complete.py +1 -1
- sage/combinat/posets/forest.py +1 -1
- sage/combinat/posets/hasse_cython.cpython-312-darwin.so +0 -0
- sage/combinat/posets/incidence_algebras.py +1 -1
- sage/combinat/posets/linear_extension_iterator.cpython-312-darwin.so +0 -0
- sage/combinat/posets/linear_extension_iterator.pyx +2 -0
- sage/combinat/posets/linear_extensions.py +3 -12
- sage/combinat/posets/moebius_algebra.py +1 -1
- sage/combinat/rooted_tree.py +1 -1
- sage/ext_data/kenzo/CP2.txt +45 -0
- sage/ext_data/kenzo/CP3.txt +349 -0
- sage/ext_data/kenzo/CP4.txt +4774 -0
- sage/ext_data/kenzo/README.txt +49 -0
- sage/ext_data/kenzo/S4.txt +20 -0
- sage/graphs/asteroidal_triples.cpython-312-darwin.so +0 -0
- sage/graphs/base/boost_graph.cpython-312-darwin.so +0 -0
- sage/graphs/base/c_graph.cpython-312-darwin.so +0 -0
- sage/graphs/base/dense_graph.cpython-312-darwin.so +0 -0
- sage/graphs/base/graph_backends.cpython-312-darwin.so +0 -0
- sage/graphs/base/sparse_graph.cpython-312-darwin.so +0 -0
- sage/graphs/base/static_dense_graph.cpython-312-darwin.so +0 -0
- sage/graphs/base/static_sparse_backend.cpython-312-darwin.so +0 -0
- sage/graphs/base/static_sparse_graph.cpython-312-darwin.so +0 -0
- sage/graphs/centrality.cpython-312-darwin.so +0 -0
- sage/graphs/comparability.cpython-312-darwin.so +0 -0
- sage/graphs/connectivity.cpython-312-darwin.so +0 -0
- sage/graphs/convexity_properties.cpython-312-darwin.so +0 -0
- sage/graphs/distances_all_pairs.cpython-312-darwin.so +0 -0
- sage/graphs/edge_connectivity.cpython-312-darwin.so +0 -0
- sage/graphs/generators/distance_regular.cpython-312-darwin.so +0 -0
- sage/graphs/generators/distance_regular.pyx +1 -1
- sage/graphs/generic_graph_pyx.cpython-312-darwin.so +0 -0
- sage/graphs/genus.cpython-312-darwin.so +0 -0
- sage/graphs/graph.py +1 -1
- sage/graphs/graph_coloring.cpython-312-darwin.so +0 -0
- sage/graphs/graph_decompositions/bandwidth.cpython-312-darwin.so +0 -0
- sage/graphs/graph_decompositions/clique_separators.cpython-312-darwin.so +0 -0
- sage/graphs/graph_decompositions/cutwidth.cpython-312-darwin.so +0 -0
- sage/graphs/graph_decompositions/fast_digraph.cpython-312-darwin.so +0 -0
- sage/graphs/graph_decompositions/graph_products.cpython-312-darwin.so +0 -0
- sage/graphs/graph_decompositions/modular_decomposition.cpython-312-darwin.so +0 -0
- sage/graphs/graph_decompositions/slice_decomposition.cpython-312-darwin.so +0 -0
- sage/graphs/graph_decompositions/tree_decomposition.cpython-312-darwin.so +0 -0
- sage/graphs/graph_decompositions/vertex_separation.cpython-312-darwin.so +0 -0
- sage/graphs/graph_generators_pyx.cpython-312-darwin.so +0 -0
- sage/graphs/graph_list.py +2 -3
- sage/graphs/hyperbolicity.cpython-312-darwin.so +0 -0
- sage/graphs/independent_sets.cpython-312-darwin.so +0 -0
- sage/graphs/isoperimetric_inequalities.cpython-312-darwin.so +0 -0
- sage/graphs/line_graph.cpython-312-darwin.so +0 -0
- sage/graphs/path_enumeration.cpython-312-darwin.so +0 -0
- sage/graphs/spanning_tree.cpython-312-darwin.so +0 -0
- sage/graphs/strongly_regular_db.cpython-312-darwin.so +0 -0
- sage/graphs/traversals.cpython-312-darwin.so +0 -0
- sage/graphs/trees.cpython-312-darwin.so +0 -0
- sage/graphs/views.cpython-312-darwin.so +0 -0
- sage/graphs/weakly_chordal.cpython-312-darwin.so +0 -0
- sage/groups/perm_gps/partn_ref/refinement_graphs.cpython-312-darwin.so +0 -0
- sage/sandpiles/sandpile.py +1 -2
- {passagemath_graphs-10.5.34.dist-info → passagemath_graphs-10.5.43.dist-info}/top_level.txt +0 -0
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Metadata-Version: 2.4
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Name: passagemath-graphs
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Version: 10.5.
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Version: 10.5.43
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Summary: passagemath: Graphs, posets, hypergraphs, designs, abstract complexes, combinatorial polyhedra, abelian sandpiles, quivers
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Author-email: The Sage Developers <sage-support@googlegroups.com>
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Maintainer: Matthias Köppe, passagemath contributors
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License:
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License-Expression: GPL-2.0-or-later
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Project-URL: release notes, https://github.com/passagemath/passagemath/releases
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Project-URL: repo (upstream), https://github.com/sagemath/sage
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Project-URL: repo, https://github.com/passagemath/passagemath
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Classifier: Development Status :: 6 - Mature
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Classifier: Intended Audience :: Education
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Classifier: Intended Audience :: Science/Research
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Classifier: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
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Classifier: Operating System :: POSIX
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Classifier: Operating System :: MacOS :: MacOS X
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Classifier: Programming Language :: Python :: 3 :: Only
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Requires-Python: <3.14,>=3.9
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Description-Content-Type: text/x-rst
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Requires-Dist: gmpy2~=2.1.b999
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Requires-Dist: passagemath-categories~=10.5.
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Requires-Dist: passagemath-environment~=10.5.43.0
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Provides-Extra: groups
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Requires-Dist: passagemath-graphs[nauty]; extra == "groups"
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Requires-Dist: passagemath-graphs[combinat,databases,groups,mip,modules,planarity,polyhedra,rankwidth,repl]; extra == "standard"
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=======================================================================================================================================================
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passagemath: Graphs, posets, hypergraphs, designs, abstract complexes, combinatorial polyhedra, abelian sandpiles, quivers
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About this pip-installable distribution package
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-----------------------------------------------
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This pip-installable package `passagemath-graphs` is a distribution of a part of the Sage Library. It provides a small subset of the modules of the Sage library ("sagelib", `
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This pip-installable package `passagemath-graphs` is a distribution of a part of the Sage Library. It provides a small subset of the modules of the Sage library ("sagelib", `passagemath-standard`) for computations with graphs, posets, complexes, etc.
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It consists of over 170 first-party Python and Cython modules and uses the `Boost Graph Library <https://github.com/boostorg/graph>`_, with additional functionality from `NetworkX <https://networkx.github.io/>`_ and several other libraries.
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Available as extras, from other distributions
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---------------------------------------------
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Libraries
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~~~~~~~~~
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``pip install passagemath-graphs[benzene,buckygen,plantri]`` additionally make
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various graph generators available via `passagemath-benzene <https://pypi.org/project/passagemath-benzene/>`_, `passagemath-buckygen <https://pypi.org/project/passagemath-buckygen/>`_, and `passagemath-plantri <https://pypi.org/project/passagemath-plantri/>`_.
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``pip install passagemath-graphs[bliss]`` additionally installs `passagemath-bliss <https://pypi.org/project/passagemath-bliss/>`_ for the purpose
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of computing graph (iso/auto)morphisms.
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``pip install passagemath-graphs[cliquer]`` additionally installs `passagemath-cliquer <https://pypi.org/project/passagemath-cliquer/>`_
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``pip install passagemath-graphs[cmr]`` additionally installs `passagemath-cmr <https://pypi.org/project/passagemath-cmr/>`_ for recognition and decomposition algorithms
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for network matrices, totally unimodular matrices and regular matroids, series-parallel matroids, etc.
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``pip install passagemath-graphs[gap]`` additionally installs `passagemath-gap <https://pypi.org/project/passagemath-gap/>`_ for group-theoretic functionality.
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``pip install passagemath-graphs[igraph]`` additionally installs
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`igraph <https://python.igraph.org/en/stable/>`_::
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$ pipx run --pip-args="--prefer-binary" --spec "passagemath-graphs[igraph,test]" ipython
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In [1]: from sage.all__sagemath_graphs import *
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In [2]: ## Example depending on igraph goes here
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``pip install passagemath-graphs[mcqd]`` additionally installs `passagemath-mcqd <https://pypi.org/project/passagemath-mcqd/>`_
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``pip install passagemath-graphs[nauty]`` additionally installs `passagemath-nauty <https://pypi.org/project/passagemath-nauty/>`_ for computing
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automorphism groups of graphs and digraphs.
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``pip install passagemath-graphs[networkx]`` additionally installs
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`NetworkX <https://networkx.github.io
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`NetworkX <https://networkx.github.io>`__::
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$ pipx run --pip-args="--prefer-binary" --spec "passagemath-graphs[networkx,test]" ipython
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In [1]: from sage.all__sagemath_graphs import *
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In [2]: ## Example depending on networkx goes here
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``pip install passagemath-graphs[pari]`` additionally installs `passagemath-pari <https://pypi.org/project/passagemath-pari/>`_
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`igraph <https://python.igraph.org/en/stable/>`::
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``pip install passagemath-graphs[planarity]`` additionally installs `passagemath-planarity <https://pypi.org/project/passagemath-planarity/>`_ for planarity testing.
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``pip install passagemath-graphs[rankwidth]`` additionally installs `passagemath-rankwidth <https://pypi.org/project/passagemath-rankwidth/>`_ for rank width and rank decompositions.
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``pip install passagemath-graphs[tdlib]`` additionally installs `passagemath-tdlib <https://pypi.org/project/passagemath-tdlib/>`_ for computing tree decompositions.
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Features
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~~~~~~~~
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``pip install passagemath-graphs[combinat]`` additionally installs `passagemath-combinat <https://pypi.org/project/passagemath-combinat/>`_
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``pip install passagemath-graphs[editor]`` additionally installs the interactive graph editor `phitigra <https://pypi.org/project/phitigra/>`_.
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``pip install passagemath-graphs[groups]`` additionally makes group-theoretic features
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available via `passagemath-gap <https://pypi.org/project/passagemath-gap/>`_, `passagemath-groups <https://pypi.org/project/passagemath-groups/>`_, and `passagemath-nauty <https://pypi.org/project/passagemath-nauty/>`_::
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$ pipx run --pip-args="--prefer-binary" --spec "passagemath-graphs[groups,test]" ipython
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In [1]: from sage.all__sagemath_graphs import *
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In [2]:
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In [2]: g = Graph({
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0: [1, 2],
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3: [2]
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})
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In [3]: aut = g.automorphism_group()
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In [4]: print(aut.order())
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``pip install passagemath-graphs[homology]`` provides homological computations for abstract complexes via `passagemath-modules <https://pypi.org/project/passagemath-modules/>`_.
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``pip install passagemath-graphs[mip]`` additionally makes the mixed-integer programming
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solver GLPK available via `passagemath-glpk <https://pypi.org/project/passagemath-glpk/>`_ and `passagemath-polyhedra <https://pypi.org/project/passagemath-polyhedra/>`_ (see there for other available solvers).::
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$ pipx run --pip-args="--prefer-binary" --spec "passagemath-graphs[mip,test]" ipython
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``pip install passagemath-graphs[modules]`` additionally makes linear algebra features available via `passagemath-modules <https://pypi.org/project/passagemath-modules/>`_.
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``pip install passagemath-graphs[plot]`` additionally installs `passagemath-plot <https://pypi.org/project/passagemath-plot/>`_.
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``pip install passagemath-graphs[polyhedra]`` additionally installs `passagemath-polyhedra <https://pypi.org/project/passagemath-polyhedra/>`_.
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``pip install passagemath-graphs[sat]`` additionally provides SAT features via `passagemath-combinat <https://pypi.org/project/passagemath-combinat/>`_.
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``pip install passagemath-graphs[standard]`` installs all libraries and features related to graphs that
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passagemath_graphs-10.5.43.dist-info/WHEEL,sha256=teO2xh-FJ1HNVGe5DhoP69xaQDzWk7o1JLSQ2CMfYdA,137
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passagemath_graphs-10.5.43.dist-info/top_level.txt,sha256=Kmzulf9WsphADFQuqgvdy5mvTLDj_V2zkFHU2s3UXos,6
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passagemath_graphs-10.5.43.dist-info/METADATA,sha256=gVMFPM2vtlhzB42_c0VHDoUJbISz2ijTNyynxtlAvOA,14024
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passagemath_graphs.dylibs/libgmp.10.dylib,sha256=KWbopqse81gamnnS9s6RJUAT7etWefG99meCR47T7pI,580928
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sage/all__sagemath_graphs.py,sha256=q3QFFFTkeijGtFSjZtlnAko3Mrnr8fK-m5Yghw2VQyM,837
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sage/topology/simplicial_complex_catalog.py,sha256=JGHpK2P6JilXIbnSIanraJTST2SQaHSqBWg8ZAlqhFU,4396
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sage/topology/simplicial_set_constructions.py,sha256=5Qw7TdOn10-NjSf8Vfrfc73-WEjKSnqFcHI3mi2SkcE,115261
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sage/graphs/base/c_graph.cpython-312-darwin.so,sha256=WwOKptUz55H7fvS5YkqpWFk0bv90RcRi1y-k9aVtBlo,686912
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sage/graphs/base/boost_graph.pxd,sha256=K3GCaIXjsmhwgTzlSntrHi3IB1t2vJpOzSS7FQGlxEo,3655
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sage/graphs/base/sparse_graph.cpython-312-darwin.so,sha256=
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sage/graphs/base/sparse_graph.cpython-312-darwin.so,sha256=zklqtYTYLenz11vedcX4PD7C_D2P09KVqiKwDHS5u94,251872
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sage/graphs/base/c_graph.pyx,sha256=Lr1cxK2A5mtR0EIQmYIljc2OgYgiBeRn5Rw0mC_k0x8,179656
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sage/graphs/base/static_sparse_graph.cpython-312-darwin.so,sha256=
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sage/graphs/base/static_sparse_graph.cpython-312-darwin.so,sha256=b2GPG-ic4KekXqAe7nUT7V8SKtKHjvbynttPQjgvRn4,236560
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sage/graphs/base/static_sparse_backend.pyx,sha256=Gu5fS7Jq-p2jfNuU-QwV60YsUtyc2jVlZ9h9hWCM9eE,55323
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sage/graphs/base/boost_graph.cpython-312-darwin.so,sha256=
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sage/graphs/base/boost_graph.cpython-312-darwin.so,sha256=BBmFSxdkrAqROfd8ljkdSvMaQBIQtngNWxiBr6c8xe8,965528
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sage/graphs/base/sparse_graph.pxd,sha256=O0oPH_Z1-fsxPK-mKMnNq-OL5cE0GcDILqDj-ajytlk,3485
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sage/graphs/base/dense_graph.pyx,sha256=HfZU7L2IScsA8_a6VCcs8rM6aWRkYTSz8oRhJWHX5mY,24167
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sage/graphs/base/graph_backends.pxd,sha256=DNjOnDRc2RPV-NtCHuoliKpNfJHC3aK7l0RifUR7DSY,150
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@@ -236,12 +241,12 @@ sage/graphs/base/dense_graph.pxd,sha256=VltYtRdTHhfpXG11C-lfMPSlm57dyP4Ot3E3FOzl
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sage/graphs/base/graph_backends.pyx,sha256=vl_Cs6xcJJSDlHEfSO55bUQMSziLY3WYnsOza3oK13o,24526
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sage/graphs/base/static_sparse_backend.pxd,sha256=DbBBsONS0Utp1szKGQaeTpoqiNC23XDaL9tnMrDAxvI,903
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sage/graphs/base/sparse_graph.pyx,sha256=dNMlc3m2Vl7fXCz5c7a-rse4boVsMSl3AevHmF0AIo0,56300
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-
sage/graphs/base/static_sparse_backend.cpython-312-darwin.so,sha256=
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-
sage/graphs/base/dense_graph.cpython-312-darwin.so,sha256=
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+
sage/graphs/base/static_sparse_backend.cpython-312-darwin.so,sha256=bae1fG6JF57LbGoAsOM_vtJnDxsrdqE0m1WSRjsoL-8,334256
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+
sage/graphs/base/dense_graph.cpython-312-darwin.so,sha256=7Q75ZAh2slq5UQTaXZFlnL8Eomx-G3z4URd8DYs_8So,190608
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sage/graphs/base/c_graph.pxd,sha256=pUsZ48m4XXx4fq8fRWeeaFkM0gzX0r63Kkw7L0IJdfk,4281
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sage/graphs/base/boost_graph.pyx,sha256=mWfPc01Gtyy3YDQ93CcOWZMhsUXN5q2BiyKt4wls-c8,111074
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sage/graphs/base/static_sparse_graph.pxd,sha256=YYCH7F6h1OteiFLfleAb57CCN-gx42n3W_9fzh8avkA,1500
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-
sage/graphs/base/graph_backends.cpython-312-darwin.so,sha256=
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+
sage/graphs/base/graph_backends.cpython-312-darwin.so,sha256=shaaek1wMxHbkMbTm4av0LXjPaPTE1nx54HEAv-0vcw,165536
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sage/knots/link.py,sha256=L6vA6oqMri3ZD5xY8zclLwuqywrzoWbfpVTskcyBtkk,177868
|
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sage/knots/free_knotinfo_monoid.py,sha256=IyaKmc4kQclQoAe9loqp9Cq2Ny7BoQXwjPFn_QYwMoY,19713
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sage/knots/knotinfo.py,sha256=ACmrGn9_t6Ff3y5xaTDLO8JJS0_Wkfb2qItWf6Nu9mI,101893
|
sage/all__sagemath_graphs.py
CHANGED
@@ -11,6 +11,11 @@ This distribution makes the following feature available::
|
|
11
11
|
|
12
12
|
from .all__sagemath_categories import *
|
13
13
|
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14
|
+
try: # extra
|
15
|
+
from sage.all__sagemath_gap import *
|
16
|
+
except ImportError:
|
17
|
+
pass
|
18
|
+
|
14
19
|
try: # extra
|
15
20
|
from sage.all__sagemath_modules import *
|
16
21
|
except ImportError:
|
sage/combinat/abstract_tree.py
CHANGED
@@ -1,6 +1,6 @@
|
|
1
1
|
# sage_setup: distribution = sagemath-graphs
|
2
2
|
r"""
|
3
|
-
Abstract
|
3
|
+
Abstract recursive trees
|
4
4
|
|
5
5
|
The purpose of this class is to help implement trees with a specific structure
|
6
6
|
on the children of each node. For instance, one could want to define a tree in
|
sage/combinat/binary_tree.py
CHANGED
@@ -2,7 +2,7 @@
|
|
2
2
|
r"""
|
3
3
|
Cluster algebras and quivers
|
4
4
|
|
5
|
-
|
5
|
+
A compendium on the cluster algebra and quiver package in Sage [MS2011]_
|
6
6
|
|
7
7
|
- :ref:`sage.combinat.cluster_algebra_quiver.quiver_mutation_type`
|
8
8
|
- :ref:`sage.combinat.cluster_algebra_quiver.quiver`
|
@@ -1,28 +1,34 @@
|
|
1
1
|
# sage_setup: distribution = sagemath-graphs
|
2
2
|
# sage.doctest: needs sage.graphs sage.modules sage.libs.singular
|
3
3
|
r"""
|
4
|
-
|
4
|
+
Cluster seeds
|
5
5
|
|
6
|
-
A *cluster seed* is a pair `(B,\mathbf{x})` with `B` being a
|
7
|
-
and with `\mathbf{x}` being an
|
6
|
+
A *cluster seed* is a pair `(B,\mathbf{x})` with `B` being a
|
7
|
+
*skew-symmetrizable* `(n+m) \times n` *-matrix* and with `\mathbf{x}` being an
|
8
|
+
`n`-tuple of *independent elements* in the field of rational functions in `n`
|
9
|
+
variables.
|
8
10
|
|
9
11
|
For the compendium on the cluster algebra and quiver package see
|
10
12
|
[MS2011]_.
|
11
13
|
|
12
|
-
AUTHORS:
|
13
|
-
|
14
|
-
- Gregg Musiker: Initial Version
|
15
|
-
- Christian Stump: Initial Version
|
16
|
-
- Aram Dermenjian (2015-07-01): Updating ability to not rely solely on clusters
|
17
|
-
- Jesse Levitt (2015-07-01): Updating ability to not rely solely on clusters
|
18
|
-
|
19
14
|
REFERENCES:
|
20
15
|
|
21
16
|
- [FZ2007]_
|
22
|
-
|
23
17
|
- [BDP2013]_
|
24
18
|
|
25
|
-
.. SEEALSO::
|
19
|
+
.. SEEALSO::
|
20
|
+
|
21
|
+
For mutation types of cluster seeds, see
|
22
|
+
:meth:`sage.combinat.cluster_algebra_quiver.quiver_mutation_type.QuiverMutationType`.
|
23
|
+
Cluster seeds are closely related to
|
24
|
+
:meth:`sage.combinat.cluster_algebra_quiver.quiver.ClusterQuiver`.
|
25
|
+
|
26
|
+
AUTHORS:
|
27
|
+
|
28
|
+
- Gregg Musiker: initial version
|
29
|
+
- Christian Stump: initial version
|
30
|
+
- Aram Dermenjian (2015-07-01): updating ability to not rely solely on clusters
|
31
|
+
- Jesse Levitt (2015-07-01): updating ability to not rely solely on clusters
|
26
32
|
"""
|
27
33
|
|
28
34
|
# ****************************************************************************
|