partis-bcr 1.0.5__py3-none-any.whl → 1.0.6__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- bin/partis-test.py +4 -1
- packages/ham/bcrham +0 -0
- {partis_bcr-1.0.5.data → partis_bcr-1.0.6.data}/scripts/partis-test.py +4 -1
- {partis_bcr-1.0.5.dist-info → partis_bcr-1.0.6.dist-info}/METADATA +1 -1
- {partis_bcr-1.0.5.dist-info → partis_bcr-1.0.6.dist-info}/RECORD +97 -137
- test/new-results/test/parameters/simu/hmm/all-mean-mute-freqs.csv +3 -3
- test/new-results/test/parameters/simu/hmm/all-mean-n-muted.csv +11 -11
- test/new-results/test/parameters/simu/hmm/all-probs.csv +3 -13
- test/new-results/test/parameters/simu/hmm/cluster_size.csv +1 -1
- test/new-results/test/parameters/simu/hmm/d-mean-mute-freqs.csv +6 -6
- test/new-results/test/parameters/simu/hmm/d-mean-n-muted.csv +3 -3
- test/new-results/test/parameters/simu/hmm/d_gene-d_3p_del-probs.csv +1 -6
- test/new-results/test/parameters/simu/hmm/d_gene-d_5p_del-probs.csv +2 -9
- test/new-results/test/parameters/simu/hmm/d_gene-probs.csv +1 -5
- test/new-results/test/parameters/simu/hmm/d_gene-vd_insertion-probs.csv +2 -10
- test/new-results/test/parameters/simu/hmm/dj_insertion_content.csv +4 -4
- test/new-results/test/parameters/simu/hmm/fv_insertion-probs.csv +2 -3
- test/new-results/test/parameters/simu/hmm/germline-sets/igh/extras.csv +0 -6
- test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighd.fasta +0 -8
- test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighj.fasta +0 -2
- test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighv.fasta +0 -10
- test/new-results/test/parameters/simu/hmm/hmms/IGHD6-13_star_01.yaml +268 -267
- test/new-results/test/parameters/simu/hmm/hmms/IGHJ4_star_02.yaml +306 -306
- test/new-results/test/parameters/simu/hmm/hmms/IGHJ6_star_02.yaml +284 -284
- test/new-results/test/parameters/simu/hmm/hmms/IGHV3-66_star_02.yaml +1191 -1191
- test/new-results/test/parameters/simu/hmm/hmms/IGHV3-7_star_05.yaml +2 -2
- test/new-results/test/parameters/simu/hmm/j-mean-mute-freqs.csv +5 -5
- test/new-results/test/parameters/simu/hmm/j-mean-n-muted.csv +4 -4
- test/new-results/test/parameters/simu/hmm/j_gene-dj_insertion-probs.csv +2 -9
- test/new-results/test/parameters/simu/hmm/j_gene-j_3p_del-probs.csv +1 -2
- test/new-results/test/parameters/simu/hmm/j_gene-j_5p_del-probs.csv +2 -7
- test/new-results/test/parameters/simu/hmm/j_gene-probs.csv +1 -2
- test/new-results/test/parameters/simu/hmm/jf_insertion-probs.csv +1 -1
- test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD6-13_star_01.csv +13 -16
- test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ4_star_02.csv +40 -44
- test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ6_star_02.csv +0 -2
- test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV3-66_star_02.csv +291 -293
- test/new-results/test/parameters/simu/hmm/seq_content.csv +4 -4
- test/new-results/test/parameters/simu/hmm/v-mean-mute-freqs.csv +3 -3
- test/new-results/test/parameters/simu/hmm/v-mean-n-muted.csv +7 -7
- test/new-results/test/parameters/simu/hmm/v_gene-probs.csv +1 -6
- test/new-results/test/parameters/simu/hmm/v_gene-v_3p_del-probs.csv +1 -7
- test/new-results/test/parameters/simu/hmm/v_gene-v_5p_del-probs.csv +1 -6
- test/new-results/test/parameters/simu/hmm/vd_insertion_content.csv +4 -4
- test/new-results/test/parameters/simu/sw/all-mean-mute-freqs.csv +3 -3
- test/new-results/test/parameters/simu/sw/all-mean-n-muted.csv +8 -8
- test/new-results/test/parameters/simu/sw/all-probs.csv +1 -9
- test/new-results/test/parameters/simu/sw/cluster_size.csv +1 -1
- test/new-results/test/parameters/simu/sw/d-mean-mute-freqs.csv +5 -5
- test/new-results/test/parameters/simu/sw/d-mean-n-muted.csv +3 -3
- test/new-results/test/parameters/simu/sw/d_gene-d_3p_del-probs.csv +1 -7
- test/new-results/test/parameters/simu/sw/d_gene-d_5p_del-probs.csv +1 -7
- test/new-results/test/parameters/simu/sw/d_gene-probs.csv +1 -5
- test/new-results/test/parameters/simu/sw/d_gene-vd_insertion-probs.csv +1 -8
- test/new-results/test/parameters/simu/sw/dj_insertion_content.csv +4 -4
- test/new-results/test/parameters/simu/sw/fv_insertion-probs.csv +1 -1
- test/new-results/test/parameters/simu/sw/germline-sets/igh/extras.csv +0 -6
- test/new-results/test/parameters/simu/sw/germline-sets/igh/ighd.fasta +0 -8
- test/new-results/test/parameters/simu/sw/germline-sets/igh/ighj.fasta +0 -2
- test/new-results/test/parameters/simu/sw/germline-sets/igh/ighv.fasta +0 -10
- test/new-results/test/parameters/simu/sw/hmms/IGHD6-13_star_01.yaml +268 -267
- test/new-results/test/parameters/simu/sw/hmms/IGHJ4_star_02.yaml +306 -306
- test/new-results/test/parameters/simu/sw/hmms/IGHJ6_star_02.yaml +22 -22
- test/new-results/test/parameters/simu/sw/hmms/IGHV3-66_star_02.yaml +1191 -1191
- test/new-results/test/parameters/simu/sw/hmms/IGHV3-7_star_05.yaml +2 -2
- test/new-results/test/parameters/simu/sw/j-mean-mute-freqs.csv +4 -4
- test/new-results/test/parameters/simu/sw/j-mean-n-muted.csv +3 -3
- test/new-results/test/parameters/simu/sw/j_gene-dj_insertion-probs.csv +1 -7
- test/new-results/test/parameters/simu/sw/j_gene-j_3p_del-probs.csv +1 -2
- test/new-results/test/parameters/simu/sw/j_gene-j_5p_del-probs.csv +1 -7
- test/new-results/test/parameters/simu/sw/j_gene-probs.csv +1 -2
- test/new-results/test/parameters/simu/sw/jf_insertion-probs.csv +1 -1
- test/new-results/test/parameters/simu/sw/mute-freqs/IGHD6-13_star_01.csv +13 -16
- test/new-results/test/parameters/simu/sw/mute-freqs/IGHJ4_star_02.csv +40 -48
- test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-66_star_02.csv +291 -293
- test/new-results/test/parameters/simu/sw/seq_content.csv +4 -4
- test/new-results/test/parameters/simu/sw/v-mean-mute-freqs.csv +3 -3
- test/new-results/test/parameters/simu/sw/v-mean-n-muted.csv +7 -7
- test/new-results/test/parameters/simu/sw/v_gene-probs.csv +1 -6
- test/new-results/test/parameters/simu/sw/v_gene-v_3p_del-probs.csv +1 -7
- test/new-results/test/parameters/simu/sw/v_gene-v_5p_del-probs.csv +1 -6
- test/new-results/test/parameters/simu/sw/vd_insertion_content.csv +4 -4
- test/new-results/test/parameters/simu/sw-cache.yaml +1 -1
- test/new-results/test.log +24 -258
- test/test.py +4 -1
- test/new-results/test/parameters/simu/hmm/hmms/IGHD1-20_star_01.yaml +0 -449
- test/new-results/test/parameters/simu/hmm/hmms/IGHD3-16_star_02.yaml +0 -870
- test/new-results/test/parameters/simu/hmm/hmms/IGHD3-22_star_01.yaml +0 -744
- test/new-results/test/parameters/simu/hmm/hmms/IGHD6-19_star_01.yaml +0 -534
- test/new-results/test/parameters/simu/hmm/hmms/IGHJ1_star_01.yaml +0 -986
- test/new-results/test/parameters/simu/hmm/hmms/IGHV1-18_star_01.yaml +0 -4484
- test/new-results/test/parameters/simu/hmm/hmms/IGHV3-23_star_01.yaml +0 -4484
- test/new-results/test/parameters/simu/hmm/hmms/IGHV4-4_star_09.yaml +0 -4438
- test/new-results/test/parameters/simu/hmm/hmms/IGHV4-61_star_01.yaml +0 -4529
- test/new-results/test/parameters/simu/hmm/hmms/IGHV5-51_star_01.yaml +0 -4484
- test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD1-20_star_01.csv +0 -9
- test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD3-16_star_02.csv +0 -30
- test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD3-22_star_01.csv +0 -32
- test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD6-19_star_01.csv +0 -22
- test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ1_star_01.csv +0 -50
- test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV1-18_star_01.csv +0 -297
- test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV3-23_star_01.csv +0 -297
- test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV4-4_star_09.csv +0 -291
- test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV4-61_star_01.csv +0 -300
- test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV5-51_star_01.csv +0 -296
- test/new-results/test/parameters/simu/sw/hmms/IGHD1-20_star_01.yaml +0 -449
- test/new-results/test/parameters/simu/sw/hmms/IGHD3-16_star_02.yaml +0 -870
- test/new-results/test/parameters/simu/sw/hmms/IGHD3-22_star_01.yaml +0 -744
- test/new-results/test/parameters/simu/sw/hmms/IGHD6-19_star_01.yaml +0 -534
- test/new-results/test/parameters/simu/sw/hmms/IGHJ1_star_01.yaml +0 -986
- test/new-results/test/parameters/simu/sw/hmms/IGHV1-18_star_01.yaml +0 -4484
- test/new-results/test/parameters/simu/sw/hmms/IGHV3-23_star_01.yaml +0 -4484
- test/new-results/test/parameters/simu/sw/hmms/IGHV4-4_star_09.yaml +0 -4438
- test/new-results/test/parameters/simu/sw/hmms/IGHV4-61_star_01.yaml +0 -4529
- test/new-results/test/parameters/simu/sw/hmms/IGHV5-51_star_01.yaml +0 -4484
- test/new-results/test/parameters/simu/sw/mute-freqs/IGHD1-20_star_01.csv +0 -9
- test/new-results/test/parameters/simu/sw/mute-freqs/IGHD3-16_star_02.csv +0 -30
- test/new-results/test/parameters/simu/sw/mute-freqs/IGHD3-22_star_01.csv +0 -32
- test/new-results/test/parameters/simu/sw/mute-freqs/IGHD6-19_star_01.csv +0 -20
- test/new-results/test/parameters/simu/sw/mute-freqs/IGHJ1_star_01.csv +0 -50
- test/new-results/test/parameters/simu/sw/mute-freqs/IGHV1-18_star_01.csv +0 -297
- test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-23_star_01.csv +0 -297
- test/new-results/test/parameters/simu/sw/mute-freqs/IGHV4-4_star_09.csv +0 -291
- test/new-results/test/parameters/simu/sw/mute-freqs/IGHV4-61_star_01.csv +0 -300
- test/new-results/test/parameters/simu/sw/mute-freqs/IGHV5-51_star_01.csv +0 -296
- {partis_bcr-1.0.5.data → partis_bcr-1.0.6.data}/scripts/cf-alleles.py +0 -0
- {partis_bcr-1.0.5.data → partis_bcr-1.0.6.data}/scripts/cf-germlines.py +0 -0
- {partis_bcr-1.0.5.data → partis_bcr-1.0.6.data}/scripts/compare-plotdirs.py +0 -0
- {partis_bcr-1.0.5.data → partis_bcr-1.0.6.data}/scripts/extract-pairing-info.py +0 -0
- {partis_bcr-1.0.5.data → partis_bcr-1.0.6.data}/scripts/gctree-run.py +0 -0
- {partis_bcr-1.0.5.data → partis_bcr-1.0.6.data}/scripts/get-naive-probabilities.py +0 -0
- {partis_bcr-1.0.5.data → partis_bcr-1.0.6.data}/scripts/parse-output.py +0 -0
- {partis_bcr-1.0.5.data → partis_bcr-1.0.6.data}/scripts/split-loci.py +0 -0
- {partis_bcr-1.0.5.dist-info → partis_bcr-1.0.6.dist-info}/WHEEL +0 -0
- {partis_bcr-1.0.5.dist-info → partis_bcr-1.0.6.dist-info}/entry_points.txt +0 -0
- {partis_bcr-1.0.5.dist-info → partis_bcr-1.0.6.dist-info}/licenses/COPYING +0 -0
- {partis_bcr-1.0.5.dist-info → partis_bcr-1.0.6.dist-info}/top_level.txt +0 -0
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26
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27
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|
28
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