partis-bcr 1.0.13.post1.dev2__cp312-cp312-manylinux1_x86_64.whl → 1.0.13.post1.dev4__cp312-cp312-manylinux1_x86_64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (44) hide show
  1. {partis_bcr-1.0.13.post1.dev2.dist-info → partis_bcr-1.0.13.post1.dev4.dist-info}/METADATA +1 -1
  2. {partis_bcr-1.0.13.post1.dev2.dist-info → partis_bcr-1.0.13.post1.dev4.dist-info}/RECORD +44 -44
  3. test/new-results/partition-new-simu/fasttree/iclust-0/log +3 -3
  4. test/new-results/partition-new-simu/fasttree/iclust-2/log +1 -1
  5. test/new-results/run-times.csv +5 -5
  6. test/new-results/test.log +13 -13
  7. test/paired/new-results/partition-new-simu/fasttree/iclust-2/log +1 -1
  8. test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-0/log +2 -2
  9. test/paired/new-results/partition-new-simu-annotation-performance/plots/flcount-matrix.svg +107 -107
  10. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop-log.svg +83 -83
  11. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop.svg +61 -61
  12. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-after.svg +18 -18
  13. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-before.svg +24 -24
  14. test/paired/new-results/partition-new-simu-annotation-performance/plots/pseq-matrix.svg +35 -35
  15. test/paired/new-results/partition-new-simu-annotation-performance/plots/seqs-per-droplet.svg +22 -22
  16. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct-family.svg +45 -45
  17. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct.svg +45 -45
  18. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-mispaired.svg +45 -45
  19. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-multiple.svg +15 -15
  20. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-near-family.svg +15 -15
  21. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-total.svg +47 -47
  22. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-unpaired.svg +48 -48
  23. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance.svg +27 -27
  24. test/paired/new-results/run-times.csv +7 -7
  25. test/paired/new-results/subset-partition-new-simu/isub-0/partition.log +4 -4
  26. test/paired/new-results/subset-partition-new-simu/isub-1/partition.log +11 -11
  27. test/paired/new-results/subset-partition-new-simu/merged-partition.log +4 -4
  28. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/sw-cache.yaml +1 -1
  29. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/sw-cache.yaml +1 -1
  30. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/sw-cache.yaml +1 -1
  31. test/paired/new-results/test.log +70 -70
  32. {partis_bcr-1.0.13.post1.dev2.data → partis_bcr-1.0.13.post1.dev4.data}/scripts/cf-alleles.py +0 -0
  33. {partis_bcr-1.0.13.post1.dev2.data → partis_bcr-1.0.13.post1.dev4.data}/scripts/cf-germlines.py +0 -0
  34. {partis_bcr-1.0.13.post1.dev2.data → partis_bcr-1.0.13.post1.dev4.data}/scripts/compare-plotdirs.py +0 -0
  35. {partis_bcr-1.0.13.post1.dev2.data → partis_bcr-1.0.13.post1.dev4.data}/scripts/extract-pairing-info.py +0 -0
  36. {partis_bcr-1.0.13.post1.dev2.data → partis_bcr-1.0.13.post1.dev4.data}/scripts/gctree-run.py +0 -0
  37. {partis_bcr-1.0.13.post1.dev2.data → partis_bcr-1.0.13.post1.dev4.data}/scripts/get-naive-probabilities.py +0 -0
  38. {partis_bcr-1.0.13.post1.dev2.data → partis_bcr-1.0.13.post1.dev4.data}/scripts/parse-output.py +0 -0
  39. {partis_bcr-1.0.13.post1.dev2.data → partis_bcr-1.0.13.post1.dev4.data}/scripts/partis-test.py +0 -0
  40. {partis_bcr-1.0.13.post1.dev2.data → partis_bcr-1.0.13.post1.dev4.data}/scripts/split-loci.py +0 -0
  41. {partis_bcr-1.0.13.post1.dev2.dist-info → partis_bcr-1.0.13.post1.dev4.dist-info}/WHEEL +0 -0
  42. {partis_bcr-1.0.13.post1.dev2.dist-info → partis_bcr-1.0.13.post1.dev4.dist-info}/entry_points.txt +0 -0
  43. {partis_bcr-1.0.13.post1.dev2.dist-info → partis_bcr-1.0.13.post1.dev4.dist-info}/licenses/COPYING +0 -0
  44. {partis_bcr-1.0.13.post1.dev2.dist-info → partis_bcr-1.0.13.post1.dev4.dist-info}/top_level.txt +0 -0
test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/sw-cache.yaml CHANGED
@@ -1 +1 @@
1
- {"version-info": {"partis-yaml": 0.1, "partis-git": {"commit": "e253f4a05e455c88c0b829f4e34002f7b7f4b9de", "tag": "v1.0.13", "n_ahead_of_tag": "2"}}, "germline-info": {"locus": "igk", "functionalities": {}, "seqs": {"v": {"IGKV1-33*01": "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCC", "IGKV1D-13*02": "GCCATCCAGTTGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGCAGTGCTTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCTCCTAAGCTCCTGATCTATGATGCCTCCAGTTTGGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGTTTAATAGTTACCCTCA", "IGKV2-30*01": "GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCTCC", "IGKV3-11*01": "GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCC", "IGKV3-15*01": "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCC"}, "d": {"IGKDx-x*x": "A"}, "j": {"IGKJ1*01": "GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "IGKJ2*01": "TGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "IGKJ2*03": "TGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "IGKJ2*04": "TGTGCAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "IGKJ3*01": "ATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "IGKJ4*01": "GCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "IGKJ5*01": "GATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC"}}, "cyst-positions": {"IGKV1-33*01": 261, "IGKV3-11*01": 261, "IGKV1D-13*02": 261, "IGKV3-15*01": 261, "IGKV2-30*01": 276}, "phen-positions": {"IGKJ3*01": 7, "IGKJ5*01": 7, "IGKJ4*01": 7, "IGKJ2*04": 8, "IGKJ2*03": 8, "IGKJ2*01": 8, "IGKJ1*01": 7}}, "partitions": [{"logprob": 0.0, "n_clusters": 36, "n_procs": 1, "partition": [["4219142930-igk"], ["bb82ebe094-igk"], ["7c67587674-igk"], ["e6fa048856-igk"], ["4f03967793-igk"], ["28f6e090f2-igk"], ["a4b090d0be-igk"], ["f3509e0ef3-igk"], ["be186138e0-igk"], ["6cf028b770-igk"], ["51c4c0cd70-igk"], ["83d3e14e07-igk"], ["c0fcfe005f-igk"], ["9c1dc5e656-igk"], ["3a07b6f0a9-igk"], ["c2cc9da0c3-igk"], ["6577576bb8-igk"], ["cdae60eacc-igk"], ["b9148494e2-igk"], ["7334912e1e-igk"], ["789d880ef2-igk"], ["cfe3b29587-igk"], ["35fc655801-igk"], ["3542bd38d8-igk"], ["665985d2d1-igk"], ["bc11af4843-igk"], ["db63559ea9-igk"], ["7ba384a461-igk"], ["d1ee7f9ce6-igk"], ["453132f3ab-igk"], ["f094dfd68a-igk"], ["3c5f4c778a-igk"], ["28ce45b82a-igk"], ["52387a89c7-igk"], ["e2bf2000dd-igk"], ["276733008f-igk"]]}], "events": [{"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["4219142930-igk"], "invalid": false, "v_gene": "IGKV1-33*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ5*01", "cdr3_length": 33, "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCGCTCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC"], "has_shm_indels": [false], "naive_seq": "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCGCTCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "GC", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "paired-uids": [[]], "loci": ["igk"], "codon_positions": {"v": 261, "j": 291}, "k_v": {"best": 284, "min": 281, "max": 285}, "k_d": {"best": 1, "min": 1, "max": 2}, "all_matches": [{"v": {"IGKV1-33*01": {"score": 1420, "glbounds": [0, 284], "qrbounds": [0, 284]}}, "d": {"IGKDx-x*x": {"score": 1, "glbounds": [1, 1], "qrbounds": [284, 284]}}, "j": {"IGKJ5*01": {"score": 180, "glbounds": [2, 38], "qrbounds": [286, 322]}}}], "padlefts": [""], "padrights": [""]}, {"qr_gap_seqs": ["GATGTTGTGATGAAGTTTTAGTCTTAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATCCAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAAACTCCAAGGC....................................ACCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCAGTACACTTTTGGCCAGGGGACCAAGCTGGAGATAAAAC"], "gl_gap_seqs": ["GATGTTGTGATGA.........CTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCAGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC"], "indel_reversed_seqs": ["GATGTTGTGATGACTTAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATCCAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAAACTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGACCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCAGTACACTTTTGGCCAGGGGACCAAGCTGGAGATAAAAC"], "unique_ids": ["bb82ebe094-igk"], "invalid": false, "v_gene": "IGKV2-30*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ2*01", "cdr3_length": 33, "mut_freqs": [0.01483679525222552], "n_mutations": [5], "input_seqs": ["GATGTTGTGATGAAGTTTTAGTCTTAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATCCAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAAACTCCAAGGCACCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCAGTACACTTTTGGCCAGGGGACCAAGCTGGAGATAAAAC"], "has_shm_indels": [true], "naive_seq": "GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCAGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_3p_del": 4, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "A", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [true], "paired-uids": [["bb82ebe094-igh"]], "loci": ["igk"], "codon_positions": {"v": 276, "j": 306}, "k_v": {"best": 298, "min": 295, "max": 299}, "k_d": {"best": 1, "min": 1, "max": 2}, "all_matches": [{"v": {"IGKV2-30*01": {"score": 1450, "glbounds": [0, 298], "qrbounds": [0, 298]}}, "d": {"IGKDx-x*x": {"score": 1, "glbounds": [1, 1], "qrbounds": [298, 298]}}, "j": {"IGKJ2*01": {"score": 180, "glbounds": [1, 39], "qrbounds": [299, 337]}, "IGKJ2*03": {"score": 170, "glbounds": [1, 39], "qrbounds": [299, 337]}}}], "padlefts": [""], "padrights": [""]}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["7c67587674-igk"], "invalid": false, "v_gene": "IGKV1-33*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ4*01", "cdr3_length": 36, "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "has_shm_indels": [false], "naive_seq": "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_3p_del": 1, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "G", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "paired-uids": [["7c67587674-igh"]], "loci": ["igk"], "codon_positions": {"v": 261, "j": 294}, "k_v": {"best": 286, "min": 283, "max": 287}, "k_d": {"best": 1, "min": 1, "max": 2}, "all_matches": [{"v": {"IGKV1-33*01": {"score": 1430, "glbounds": [0, 286], "qrbounds": [0, 286]}}, "d": {"IGKDx-x*x": {"score": 1, "glbounds": [1, 1], "qrbounds": [286, 286]}}, "j": {"IGKJ4*01": {"score": 190, "glbounds": [0, 38], "qrbounds": [287, 325]}}}], "padlefts": [""], "padrights": [""]}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["e6fa048856-igk"], "invalid": false, "v_gene": "IGKV2-30*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ2*01", "cdr3_length": 33, "mut_freqs": [0.011869436201780416], "n_mutations": [4], "input_seqs": ["GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCATGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCACGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGCGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCGTACACTTTTGGACAGGGGACCAAGCTGGAGATCAAAC"], "has_shm_indels": [false], "naive_seq": "GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": 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["GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "indel_reversed_seqs": ["GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTGCGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "unique_ids": ["4f03967793-igk"], "invalid": false, "v_gene": "IGKV1-33*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ4*01", "cdr3_length": 36, "mut_freqs": [0.003076923076923077], "n_mutations": [1], "input_seqs": 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["GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAACCCTCGTATACAGTGATTGAAACACCTACTTGAATTGGTTTCAGCAGAGGCGAGGCCAAACTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGCGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCATACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC"], "has_shm_indels": [false], "naive_seq": "GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCATACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "A", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [true], "paired-uids": [[]], "loci": ["igk"], "codon_positions": {"v": 276, "j": 306}, "k_v": {"best": 299, "min": 296, "max": 300}, "k_d": {"best": 1, "min": 1, "max": 2}, "all_matches": [{"v": {"IGKV2-30*01": {"score": 1445, "glbounds": [0, 299], "qrbounds": [0, 299]}}, "d": {"IGKDx-x*x": {"score": 1, "glbounds": [1, 1], "qrbounds": [299, 299]}}, "j": {"IGKJ2*01": {"score": 185, "glbounds": [2, 39], "qrbounds": [300, 337]}, "IGKJ2*03": {"score": 175, "glbounds": [2, 39], "qrbounds": [300, 337]}}}], "padlefts": [""], "padrights": [""]}, {"qr_gap_seqs": ["GATGTTGTGATGACTCAGTCTCCACT....CTGCCCGTCACCCTTGGACAGCCGGCCCCCATCTCCTGCAGGTCTAGTCAAAACCTCGTATACAGTGAAGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTTGTGGTAATAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATTAGCAGGGTGGAGGCTGAAGATGTTGGGGTTTAATACTGCATGCAAGGTACACTCTGGCCGTACACTTTTGGCCAGGGGACAAAGCTGGAGATCAAAC"], "gl_gap_seqs": ["GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTC.........TAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC"], "indel_reversed_seqs": ["GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCCCCATCTCCTGCAGGTCTAGTCAAAACCTCGTATACAGTGAAGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATTAGCAGGGTGGAGGCTGAAGATGTTGGGGTTTAATACTGCATGCAAGGTACACTCTGGCCGTACACTTTTGGCCAGGGGACAAAGCTGGAGATCAAAC"], "unique_ids": ["276733008f-igk"], "invalid": false, "v_gene": "IGKV2-30*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ2*01", "cdr3_length": 33, "mut_freqs": [0.02373887240356083], "n_mutations": [8], "input_seqs": ["GATGTTGTGATGACTCAGTCTCCACTCTGCCCGTCACCCTTGGACAGCCGGCCCCCATCTCCTGCAGGTCTAGTCAAAACCTCGTATACAGTGAAGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTTGTGGTAATAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATTAGCAGGGTGGAGGCTGAAGATGTTGGGGTTTAATACTGCATGCAAGGTACACTCTGGCCGTACACTTTTGGCCAGGGGACAAAGCTGGAGATCAAAC"], "has_shm_indels": [true], "naive_seq": "GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [false], "stops": [true], "paired-uids": [["276733008f-igh"]], "loci": ["igk"], "codon_positions": {"v": 276, "j": 306}, "k_v": {"best": 299, "min": 296, "max": 300}, "k_d": {"best": 1, "min": 1, "max": 2}, "all_matches": [{"v": {"IGKV2-30*01": {"score": 1425, "glbounds": [0, 299], "qrbounds": [0, 299]}}, "d": {"IGKDx-x*x": {"score": 1, "glbounds": [1, 1], "qrbounds": [299, 299]}}, "j": {"IGKJ2*01": {"score": 180, "glbounds": [1, 39], "qrbounds": [299, 337]}, "IGKJ2*03": {"score": 170, "glbounds": [1, 39], "qrbounds": [299, 337]}}}], "padlefts": [""], "padrights": [""]}]}
1
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"GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCTCC", "IGKV3-11*01": "GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCC", "IGKV3-15*01": "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCC"}, "d": {"IGKDx-x*x": "A"}, "j": {"IGKJ1*01": "GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "IGKJ2*01": "TGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "IGKJ2*03": "TGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "IGKJ2*04": "TGTGCAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "IGKJ3*01": "ATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "IGKJ4*01": "GCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "IGKJ5*01": "GATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC"}}, "cyst-positions": {"IGKV1-33*01": 261, "IGKV3-11*01": 261, "IGKV1D-13*02": 261, "IGKV3-15*01": 261, "IGKV2-30*01": 276}, "phen-positions": {"IGKJ3*01": 7, "IGKJ5*01": 7, "IGKJ4*01": 7, "IGKJ2*04": 8, "IGKJ2*03": 8, "IGKJ2*01": 8, "IGKJ1*01": 7}}, "partitions": [{"logprob": 0.0, "n_clusters": 36, "n_procs": 1, "partition": [["4219142930-igk"], ["bb82ebe094-igk"], ["7c67587674-igk"], ["e6fa048856-igk"], ["4f03967793-igk"], ["28f6e090f2-igk"], ["a4b090d0be-igk"], ["f3509e0ef3-igk"], ["be186138e0-igk"], ["6cf028b770-igk"], ["51c4c0cd70-igk"], ["83d3e14e07-igk"], ["c0fcfe005f-igk"], ["9c1dc5e656-igk"], ["3a07b6f0a9-igk"], ["c2cc9da0c3-igk"], ["6577576bb8-igk"], ["cdae60eacc-igk"], ["b9148494e2-igk"], ["7334912e1e-igk"], ["789d880ef2-igk"], ["cfe3b29587-igk"], ["35fc655801-igk"], ["3542bd38d8-igk"], ["665985d2d1-igk"], ["bc11af4843-igk"], ["db63559ea9-igk"], ["7ba384a461-igk"], ["d1ee7f9ce6-igk"], ["453132f3ab-igk"], ["f094dfd68a-igk"], ["3c5f4c778a-igk"], ["28ce45b82a-igk"], ["52387a89c7-igk"], ["e2bf2000dd-igk"], ["276733008f-igk"]]}], "events": [{"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["4219142930-igk"], "invalid": false, "v_gene": "IGKV1-33*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ5*01", "cdr3_length": 33, "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": 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["GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCAGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATTGAAACACCTAATTGAATTGGTTTCAGCAGAGGCGAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCATACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC"], "has_shm_indels": [false], "naive_seq": "GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCATACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "A", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [true], "paired-uids": [["52387a89c7-igh", "eee2c7797d-igh"]], "loci": ["igk"], "codon_positions": {"v": 276, "j": 306}, "k_v": {"best": 299, "min": 296, "max": 300}, "k_d": {"best": 1, "min": 1, "max": 2}, "all_matches": [{"v": {"IGKV2-30*01": {"score": 1455, "glbounds": [0, 299], "qrbounds": [0, 299]}}, "d": {"IGKDx-x*x": {"score": 1, "glbounds": [1, 1], "qrbounds": [299, 299]}}, "j": {"IGKJ2*01": {"score": 185, "glbounds": [2, 39], "qrbounds": [300, 337]}, "IGKJ2*03": {"score": 175, "glbounds": [2, 39], "qrbounds": [300, 337]}}}], "padlefts": [""], "padrights": [""]}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["e2bf2000dd-igk"], "invalid": false, "v_gene": "IGKV2-30*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ2*01", "cdr3_length": 33, "mut_freqs": [0.01483679525222552], "n_mutations": [5], "input_seqs": ["GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAACCCTCGTATACAGTGATTGAAACACCTACTTGAATTGGTTTCAGCAGAGGCGAGGCCAAACTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGCGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCATACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC"], "has_shm_indels": [false], "naive_seq": "GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCATACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "A", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [true], "paired-uids": [[]], "loci": ["igk"], "codon_positions": {"v": 276, "j": 306}, "k_v": {"best": 299, "min": 296, "max": 300}, "k_d": {"best": 1, "min": 1, "max": 2}, "all_matches": [{"v": {"IGKV2-30*01": {"score": 1445, "glbounds": [0, 299], "qrbounds": [0, 299]}}, "d": {"IGKDx-x*x": {"score": 1, "glbounds": [1, 1], "qrbounds": [299, 299]}}, "j": {"IGKJ2*01": {"score": 185, "glbounds": [2, 39], "qrbounds": [300, 337]}, "IGKJ2*03": {"score": 175, "glbounds": [2, 39], "qrbounds": [300, 337]}}}], "padlefts": [""], "padrights": [""]}, {"qr_gap_seqs": ["GATGTTGTGATGACTCAGTCTCCACT....CTGCCCGTCACCCTTGGACAGCCGGCCCCCATCTCCTGCAGGTCTAGTCAAAACCTCGTATACAGTGAAGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTTGTGGTAATAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATTAGCAGGGTGGAGGCTGAAGATGTTGGGGTTTAATACTGCATGCAAGGTACACTCTGGCCGTACACTTTTGGCCAGGGGACAAAGCTGGAGATCAAAC"], "gl_gap_seqs": ["GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTC.........TAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC"], "indel_reversed_seqs": ["GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCCCCATCTCCTGCAGGTCTAGTCAAAACCTCGTATACAGTGAAGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATTAGCAGGGTGGAGGCTGAAGATGTTGGGGTTTAATACTGCATGCAAGGTACACTCTGGCCGTACACTTTTGGCCAGGGGACAAAGCTGGAGATCAAAC"], "unique_ids": ["276733008f-igk"], "invalid": false, "v_gene": "IGKV2-30*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ2*01", "cdr3_length": 33, "mut_freqs": [0.02373887240356083], "n_mutations": [8], "input_seqs": ["GATGTTGTGATGACTCAGTCTCCACTCTGCCCGTCACCCTTGGACAGCCGGCCCCCATCTCCTGCAGGTCTAGTCAAAACCTCGTATACAGTGAAGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTTGTGGTAATAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATTAGCAGGGTGGAGGCTGAAGATGTTGGGGTTTAATACTGCATGCAAGGTACACTCTGGCCGTACACTTTTGGCCAGGGGACAAAGCTGGAGATCAAAC"], "has_shm_indels": [true], "naive_seq": "GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [false], "stops": [true], "paired-uids": [["276733008f-igh"]], "loci": ["igk"], "codon_positions": {"v": 276, "j": 306}, "k_v": {"best": 299, "min": 296, "max": 300}, "k_d": {"best": 1, "min": 1, "max": 2}, "all_matches": [{"v": {"IGKV2-30*01": {"score": 1425, "glbounds": [0, 299], "qrbounds": [0, 299]}}, "d": {"IGKDx-x*x": {"score": 1, "glbounds": [1, 1], "qrbounds": [299, 299]}}, "j": {"IGKJ2*01": {"score": 180, "glbounds": [1, 39], "qrbounds": [299, 337]}, "IGKJ2*03": {"score": 170, "glbounds": [1, 39], "qrbounds": [299, 337]}}}], "padlefts": [""], "padrights": [""]}]}