partis-bcr 1.0.13.post1.dev2__cp312-cp312-manylinux1_x86_64.whl → 1.0.13.post1.dev3__cp312-cp312-manylinux1_x86_64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (45) hide show
  1. {partis_bcr-1.0.13.post1.dev2.dist-info → partis_bcr-1.0.13.post1.dev3.dist-info}/METADATA +1 -1
  2. {partis_bcr-1.0.13.post1.dev2.dist-info → partis_bcr-1.0.13.post1.dev3.dist-info}/RECORD +45 -45
  3. test/new-results/partition-new-simu/fasttree/iclust-0/log +3 -3
  4. test/new-results/run-times.csv +8 -8
  5. test/new-results/test.log +14 -14
  6. test/paired/new-results/partition-new-simu/fasttree/iclust-0/log +4 -4
  7. test/paired/new-results/partition-new-simu/fasttree/iclust-1/log +5 -5
  8. test/paired/new-results/partition-new-simu/fasttree/iclust-2/log +1 -1
  9. test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-0/log +2 -2
  10. test/paired/new-results/partition-new-simu-annotation-performance/plots/flcount-matrix.svg +107 -107
  11. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop-log.svg +83 -83
  12. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop.svg +61 -61
  13. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-after.svg +18 -18
  14. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-before.svg +24 -24
  15. test/paired/new-results/partition-new-simu-annotation-performance/plots/pseq-matrix.svg +35 -35
  16. test/paired/new-results/partition-new-simu-annotation-performance/plots/seqs-per-droplet.svg +22 -22
  17. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct-family.svg +45 -45
  18. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct.svg +45 -45
  19. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-mispaired.svg +45 -45
  20. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-multiple.svg +15 -15
  21. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-near-family.svg +15 -15
  22. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-total.svg +47 -47
  23. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-unpaired.svg +48 -48
  24. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance.svg +27 -27
  25. test/paired/new-results/run-times.csv +6 -6
  26. test/paired/new-results/subset-partition-new-simu/isub-0/partition.log +1 -1
  27. test/paired/new-results/subset-partition-new-simu/isub-1/partition.log +4 -4
  28. test/paired/new-results/subset-partition-new-simu/merged-partition.log +2 -2
  29. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/sw-cache.yaml +1 -1
  30. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/sw-cache.yaml +1 -1
  31. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/sw-cache.yaml +1 -1
  32. test/paired/new-results/test.log +57 -57
  33. {partis_bcr-1.0.13.post1.dev2.data → partis_bcr-1.0.13.post1.dev3.data}/scripts/cf-alleles.py +0 -0
  34. {partis_bcr-1.0.13.post1.dev2.data → partis_bcr-1.0.13.post1.dev3.data}/scripts/cf-germlines.py +0 -0
  35. {partis_bcr-1.0.13.post1.dev2.data → partis_bcr-1.0.13.post1.dev3.data}/scripts/compare-plotdirs.py +0 -0
  36. {partis_bcr-1.0.13.post1.dev2.data → partis_bcr-1.0.13.post1.dev3.data}/scripts/extract-pairing-info.py +0 -0
  37. {partis_bcr-1.0.13.post1.dev2.data → partis_bcr-1.0.13.post1.dev3.data}/scripts/gctree-run.py +0 -0
  38. {partis_bcr-1.0.13.post1.dev2.data → partis_bcr-1.0.13.post1.dev3.data}/scripts/get-naive-probabilities.py +0 -0
  39. {partis_bcr-1.0.13.post1.dev2.data → partis_bcr-1.0.13.post1.dev3.data}/scripts/parse-output.py +0 -0
  40. {partis_bcr-1.0.13.post1.dev2.data → partis_bcr-1.0.13.post1.dev3.data}/scripts/partis-test.py +0 -0
  41. {partis_bcr-1.0.13.post1.dev2.data → partis_bcr-1.0.13.post1.dev3.data}/scripts/split-loci.py +0 -0
  42. {partis_bcr-1.0.13.post1.dev2.dist-info → partis_bcr-1.0.13.post1.dev3.dist-info}/WHEEL +0 -0
  43. {partis_bcr-1.0.13.post1.dev2.dist-info → partis_bcr-1.0.13.post1.dev3.dist-info}/entry_points.txt +0 -0
  44. {partis_bcr-1.0.13.post1.dev2.dist-info → partis_bcr-1.0.13.post1.dev3.dist-info}/licenses/COPYING +0 -0
  45. {partis_bcr-1.0.13.post1.dev2.dist-info → partis_bcr-1.0.13.post1.dev3.dist-info}/top_level.txt +0 -0
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test/paired/new-results/run-times.csv CHANGED
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  name,seconds
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3
- partition-new-simu,21.8
4
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3
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4
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  seed-partition-new-simu,10.7
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test/paired/new-results/subset-partition-new-simu/isub-0/partition.log CHANGED
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- total time: 24.5
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+ total time: 24.7
test/paired/new-results/subset-partition-new-simu/isub-1/partition.log CHANGED
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  running 10 procs for 32 seqs
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  kept 14 (0.438) unproductive
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+ water time: 0.1 (ig-sw 0.0 processing 0.0)
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  smith-waterman (writing parameters)
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  vsearch: 32 / 32 v annotations (0 failed) with 6 v genes in 0.0 sec
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@@ -138,9 +138,9 @@ smith-waterman
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+ 30 clusters with 10 procs (0.1s)
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+ 28 clusters with 5 procs (0.2s)
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test/paired/new-results/subset-partition-new-simu/merged-partition.log CHANGED
@@ -179,7 +179,7 @@ smith-waterman
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+ subcluster annotation time 0.5
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@@ -272,4 +272,4 @@ hmm
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  h 18 --> 21 +3
273
273
  k 6 --> 15 +9
274
274
  l 3 --> 6 +3
275
- total time: 15.4
275
+ total time: 15.6