partis-bcr 1.0.12.post1.dev1__cp312-cp312-macosx_10_13_universal2.whl → 1.0.12.post1.dev4__cp312-cp312-macosx_10_13_universal2.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (62) hide show
  1. packages/bpp/bin/bppseqgen +0 -0
  2. packages/bpp/lib/libbpp-core.a +0 -0
  3. packages/bpp/lib/libbpp-core.so +0 -0
  4. packages/bpp/lib/libbpp-core.so.2 +0 -0
  5. packages/bpp/lib/libbpp-core.so.2.0.3 +0 -0
  6. packages/bpp/lib/libbpp-phyl.a +0 -0
  7. packages/bpp/lib/libbpp-phyl.so +0 -0
  8. packages/bpp/lib/libbpp-phyl.so.9 +0 -0
  9. packages/bpp/lib/libbpp-phyl.so.9.1.3 +0 -0
  10. packages/bpp/lib/libbpp-seq.a +0 -0
  11. packages/bpp/lib/libbpp-seq.so +0 -0
  12. packages/bpp/lib/libbpp-seq.so.9 +0 -0
  13. packages/bpp/lib/libbpp-seq.so.9.1.3 +0 -0
  14. {partis_bcr-1.0.12.post1.dev1.dist-info → partis_bcr-1.0.12.post1.dev4.dist-info}/METADATA +1 -1
  15. {partis_bcr-1.0.12.post1.dev1.dist-info → partis_bcr-1.0.12.post1.dev4.dist-info}/RECORD +62 -49
  16. test/new-results/partition-new-simu/fasttree/iclust-0/log +3 -3
  17. test/new-results/partition-new-simu/fasttree/iclust-1/log +1 -1
  18. test/new-results/partition-new-simu/fasttree/iclust-2/log +3 -3
  19. test/new-results/run-times.csv +8 -8
  20. test/new-results/test.log +39 -39
  21. test/paired/new-results/partition-new-simu/fasttree/iclust-0/log +1 -1
  22. test/paired/new-results/partition-new-simu/fasttree/iclust-1/log +1 -1
  23. test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-0/log +2 -2
  24. test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-0/log +3 -3
  25. test/paired/new-results/partition-new-simu/igh+igl/partition-igh/fasttree/iclust-0/log +5 -5
  26. test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-0/log +3 -3
  27. test/paired/new-results/partition-new-simu-annotation-performance/plots/flcount-matrix.svg +107 -107
  28. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop-log.svg +83 -83
  29. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop.svg +61 -61
  30. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-after.svg +18 -18
  31. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-before.svg +24 -24
  32. test/paired/new-results/partition-new-simu-annotation-performance/plots/pseq-matrix.svg +35 -35
  33. test/paired/new-results/partition-new-simu-annotation-performance/plots/seqs-per-droplet.svg +22 -22
  34. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct-family.svg +45 -45
  35. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct.svg +45 -45
  36. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-mispaired.svg +45 -45
  37. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-multiple.svg +15 -15
  38. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-near-family.svg +15 -15
  39. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-total.svg +47 -47
  40. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-unpaired.svg +48 -48
  41. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance.svg +27 -27
  42. test/paired/new-results/run-times.csv +6 -6
  43. test/paired/new-results/subset-partition-new-simu/isub-0/partition.log +55 -55
  44. test/paired/new-results/subset-partition-new-simu/isub-1/partition.log +55 -55
  45. test/paired/new-results/subset-partition-new-simu/merged-partition.log +29 -29
  46. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/sw-cache.yaml +1 -1
  47. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/sw-cache.yaml +1 -1
  48. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/sw-cache.yaml +1 -1
  49. test/paired/new-results/test.log +128 -128
  50. {partis_bcr-1.0.12.post1.dev1.data → partis_bcr-1.0.12.post1.dev4.data}/scripts/cf-alleles.py +0 -0
  51. {partis_bcr-1.0.12.post1.dev1.data → partis_bcr-1.0.12.post1.dev4.data}/scripts/cf-germlines.py +0 -0
  52. {partis_bcr-1.0.12.post1.dev1.data → partis_bcr-1.0.12.post1.dev4.data}/scripts/compare-plotdirs.py +0 -0
  53. {partis_bcr-1.0.12.post1.dev1.data → partis_bcr-1.0.12.post1.dev4.data}/scripts/extract-pairing-info.py +0 -0
  54. {partis_bcr-1.0.12.post1.dev1.data → partis_bcr-1.0.12.post1.dev4.data}/scripts/gctree-run.py +0 -0
  55. {partis_bcr-1.0.12.post1.dev1.data → partis_bcr-1.0.12.post1.dev4.data}/scripts/get-naive-probabilities.py +0 -0
  56. {partis_bcr-1.0.12.post1.dev1.data → partis_bcr-1.0.12.post1.dev4.data}/scripts/parse-output.py +0 -0
  57. {partis_bcr-1.0.12.post1.dev1.data → partis_bcr-1.0.12.post1.dev4.data}/scripts/partis-test.py +0 -0
  58. {partis_bcr-1.0.12.post1.dev1.data → partis_bcr-1.0.12.post1.dev4.data}/scripts/split-loci.py +0 -0
  59. {partis_bcr-1.0.12.post1.dev1.dist-info → partis_bcr-1.0.12.post1.dev4.dist-info}/WHEEL +0 -0
  60. {partis_bcr-1.0.12.post1.dev1.dist-info → partis_bcr-1.0.12.post1.dev4.dist-info}/entry_points.txt +0 -0
  61. {partis_bcr-1.0.12.post1.dev1.dist-info → partis_bcr-1.0.12.post1.dev4.dist-info}/licenses/COPYING +0 -0
  62. {partis_bcr-1.0.12.post1.dev1.dist-info → partis_bcr-1.0.12.post1.dev4.dist-info}/top_level.txt +0 -0
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